NO28G01240.1, NO28G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01240.1
Unique NameNO28G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2721
Alignment locationchr28:385292..388208 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:385292..388208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO28G01240.1 vs.
Match: EWM20871.1 (gpr7 transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 493.0 bits (1268), Expect = 1.100e-135
Identity = 242/328 (73.78%), Postives = 281/328 (85.67%), Query Frame = 0 
Query:   21 PLVSYAFKYQINDKYAETAKWSFTETYMYGSGKGPLAWKDGDASVHLNLSLRISTYADEEYVNVSVLFYHEEDRSKSIGGSASSEEGETAENEAGGAIFVPDADLCSLEFPPEASDRSLHTFAAHKVDEVSGEGQ---EWEALVHADYKVLQSGVQNVLFQVCPSLMSLSSVALAGEISFKNPYGYLPGRFYGYLPFEGARFFAFLAFFMLYLGMVVKHRKHLLRLHYAILGVLVVATAEALSWFLAFSHMNSQGTPYCCPFPAVVISAMVFELIQKTASRALLLLICLGYGIARPSLQKGEWFSLGTLTLLYLGATILDEASEIGEA 346
            PLV ++FKYQI+++YAETAKWS+TETYMYGSG+GPLAW +GDASVHLNLSLR+ST  +E+YVNVSVLFYH+++  K  G  A +E         GG  +VPD+DLC+LEFPP ASDR++HT  AHKV+   GEG    EW A V ADYKVL+SGVQNVLFQ+CP L+S+S V LAGE+SF+NPYG+LPGRFYGYLPFEGARFFAFL FF++YLG+V KHR HLLRLHYAIL VLV+ATAE+LSWFLAFSHMN++GTPYCCPFPAVV+SAMVFEL+QKT SRALLLLICLGYGIARPSL KGEW SL TL+LLYLGAT+LDEASEI EA
Sbjct:   16 PLVVHSFKYQIDERYAETAKWSYTETYMYGSGQGPLAWNNGDASVHLNLSLRLSTLTEEDYVNVSVLFYHQKEAGKEGGAEAGTE---------GGVDYVPDSDLCALEFPPGASDRAMHTVMAHKVEAAPGEGPASTEWAARVEADYKVLESGVQNVLFQICPPLVSVSEVGLAGELSFRNPYGFLPGRFYGYLPFEGARFFAFLVFFLVYLGLVCKHRGHLLRLHYAILSVLVIATAESLSWFLAFSHMNTRGTPYCCPFPAVVVSAMVFELVQKTVSRALLLLICLGYGIARPSLHKGEWLSLLTLSLLYLGATMLDEASEIAEA 334
The following BLAST results are available for this feature:
BLAST of NO28G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20871.11.100e-13573.78gpr7 transmembrane protein [Nannochloropsis gadita... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01240NO28G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01240.1NO28G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01240.1.cds1NO28G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01240.1.cds2NO28G01240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01240.1 ID=NO28G01240.1|Name=NO28G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp
GGGGGGAAGAAGAGGTCAGCGGGGAGGTTACAAATAGCTTGGAGTAGGGA
GGAGCTGAAAGTGTCCCATTAACGAAGCAAGCAAGCAATCAGGGGCAACA
GCTGCTGAACGTGTGGTATGAGGGGACTGCAATTGGGAGAAGGGGGCGGG
GGAAGCCGGCAGGAGGGGGCGAGCAAGGAAGCAACACGCATTACTGGAGA
CGGTGCTGGGTGTTTTCGTGTGGAAGAACGAAATGACCACCGGAAGACGA
GAGTGTGGAAATGGGAGAAAAGAAAAAAAAATCGATTAGGACACTCTGTC
TCCCGATGGGTGGTCTGATCGAGGAGGGGATCGAGCGCCTGGCCAACATC
GGGGAATCGATGCGATGGATGCCCCACATGATTTACAGAGTCGGCTCCTG
TTCAACCGGGGATCCATGAGGGTGAGGAGCAGTCTCGTTATTGATGCTTT
GCCTGCCGTTGTATGTGCTCGCTGTTACATCGCTGATCATCATCACTCGC
ATTAACTGTTTTCTTCTCCCGTGGTCCCCCCCCTCCTTGTTTGTTAGTGC
CTAGCCATGTATAATGGCCACGCCCACTGGAGCCACATATAACTCACTGG
CCTTCTGTTATTATCCTCGACGTGCCGTGCGGCCGAGCCGTTTATTCGCG
CTCTGTCGCTATTCGCCTCCATCCAAGGCCTTACGTCTCCCCACTCGAAC
TTTCACCGCATCTACACTTACCACACGCAAAAATACTCAGGCACTTTAAG
CTGGACCTCCTCGTGATAGCAACAGCAGTCCAAGAAGTAGCGGGGGAAAC
TTGCTGCTCTACTCTCCCGTCCTGCCCTCTCTTTTTTCCATTCCCACCGG
CATCATCATCGTCATGCAGCCTCTCCCCTCCATTCTCTGTCCCCTCCTCC
TGCTCCTCACTATTGCCTTCCTCCCCCTTGTCAGCTACGCCTTCAAGTAT
CAAATCAATGATAAATATGCCGAAACGGCCAAGTGGTCTTTCACCGAGAC
GTACATGTACGGGTCTGGCAAGGGGCCCCTCGCCTGGAAAGATGGGGACG
CCTCCGTGCATCTGAATCTCTCCCTCCGGATCTCCACTTACGCCGACGAA
GAGTACGTCAATGTGTCTGTCCTCTTTTACCACGAAGAAGACAGAAGCAA
AAGCATAGGTGGCAGCGCCAGCAGCGAGGAAGGGGAGACTGCCGAGAACG
AGGCAGGGGGAGCCATCTTCGTTCCTGATGCTGATTTGTGTTCTCTTGAG
TTTCCTCCGGAAGCCTCCGACCGTTCGCTCCACACGTTTGCCGCACACAA
AGTCGATGAAGTGAGTGGGGAGGGTCAGGAATGGGAGGCGCTGGTGCATG
CTGACTATAAGGTCTTGCAGAGTGGGGTCCAAAATGTGTTGTTCCAAGTG
TGTCCCTCCCTAATGTCCTTGTCCTCGGTGGCATTGGCTGGGGAGATCAG
TTTCAAGAATCCTTATGGGTACTTACCTGGAAGGTTCTACGGTTATCTGC
CTTTTGAGGGTGCGCGCTTTTTTGCGTTTTTGGCCTTTTTTATGCTTTAC
CTTGGGATGGTTGTTAAGCATCGCAAGCATTTGTTGCGATTGCATTACGC
GATTCTCGGGGTGTTGGTTGTGGCGACGGCGGAAGCATTGTCATGGTTTC
TGGCATTTTCGCACATGAACTCGCAAGGAACGCCGTACTGTTGTCCATTT
CCGGCGGTCGTGATAAGCGCGATGGTCTTCGAGTTAATTCAGAAAACAGC
GTCACGCGCTCTTTTGTTACTGATTTGTTTGGGGTACGGCATTGCGCGGC
CGAGTTTGCAGAAGGGGGAATGGTTCAGTCTTGGGACTTTGACATTGTTG
TATTTGGGTGCGACCATACTGGACGAAGCGAGCGAGATCGGCGAGGCCCA
ACAGATTGGAGGTAGCGGGGGACGGACGGAGAAAGGTGGGGATGGGAGTA
ACAGGATGTTATGGTCGTTTCCAGCGTTGCTGTGTGACATTGTATTCCTT
TCCTGGATCTACATGAGCCTGGTGACGATGATGAAGATTCTGCGGGAGCA
GAACGAGACGTACAAGCTCGAGTTGTACACCCGCCTGTCTTCGACAATCC
TCTTGTTTGTCACCCTCTTTGGATGTCTTACGCTTGTGGTGCTCTTGTCG
CGCATTGGCTTTTTTGTATGGCCGTGGACGCTGCTCTGGGCCGAGACTGT
TGCCTGGGAAGTCCTGAATTTCGCGGTCCTAGCTGCGGTTTGTTTCTTAT
GGCGCCCATCACCCACTAGTCAATTTTTGGCACAAGCGAAGCAGCTACCG
ACGTCTGAGGAAGGAAGGGAAGGAGGAGGGGGGGATGAGGAAGGGATTGA
GTTCTCGATCGGTAGTCAGTTTAGTATCACTGATGAGGACGAGGACGAGG
ATGAGGGAGGGAACGGCGACCTAAGAGTAGAAAGGAGAGATGCTAGATTC
TCATGAAAGGAAAAATATGAAGGGAGGTAATGAGGTTATACGTGTATGAT
GTTTTTAAGTGTTAATGACAAAAGGGGAAGGGCGAGGTGGAAAATTACAA
AGTTGGGCGATGGAGGAACGAAGATTTAGGTAGGATGATGGGGAGAAACG
TTCAAGATAATTAAGAGACACAGGGGCCTCTCTCCCGTTTCGACGGCGAT
AAAGCCGACGCAGTAGGACCCCGTCATAAAATAATTAGAAAGAAAGAATC
AAAGTCAGTGTCTAACTGGGG
back to top

protein sequence of NO28G01240.1

>NO28G01240.1-protein ID=NO28G01240.1-protein|Name=NO28G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MQPLPSILCPLLLLLTIAFLPLVSYAFKYQINDKYAETAKWSFTETYMYG
SGKGPLAWKDGDASVHLNLSLRISTYADEEYVNVSVLFYHEEDRSKSIGG
SASSEEGETAENEAGGAIFVPDADLCSLEFPPEASDRSLHTFAAHKVDEV
SGEGQEWEALVHADYKVLQSGVQNVLFQVCPSLMSLSSVALAGEISFKNP
YGYLPGRFYGYLPFEGARFFAFLAFFMLYLGMVVKHRKHLLRLHYAILGV
LVVATAEALSWFLAFSHMNSQGTPYCCPFPAVVISAMVFELIQKTASRAL
LLLICLGYGIARPSLQKGEWFSLGTLTLLYLGATILDEASEIGEAQQIGG
SGGRTEKGGDGSNRMLWSFPALLCDIVFLSWIYMSLVTMMKILREQNETY
KLELYTRLSSTILLFVTLFGCLTLVVLLSRIGFFVWPWTLLWAETVAWEV
LNFAVLAAVCFLWRPSPTSQFLAQAKQLPTSEEGREGGGGDEEGIEFSIG
SQFSITDEDEDEDEGGNGDLRVERRDARFS*
back to top

mRNA from alignment at chr28:385292..388208+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01240.1 ID=NO28G01240.1|Name=NO28G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2917bp|location=Sequence derived from alignment at chr28:385292..388208+ (Nannochloropsis oceanica)
GGGGGGAAGAAGAGGTCAGCGGGGAGGTTACAAATAGCTTGGAGTAGGGA
GGAGCTGAAAGTGTCCCATTAACGAAGCAAGCAAGCAATCAGGGGCAACA
GCTGCTGAACGTGTGGTATGAGGGGACTGCAATTGGGAGAAGGGGGCGGG
GGAAGCCGGCAGGAGGGGGCGAGCAAGGAAGCAACACGCATTACTGGAGA
CGGTGCTGGGTGTTTTCGTGTGGAAGAACGAAATGACCACCGGAAGACGA
GAGTGTGGAAATGGGAGAAAAGAAAAAAAAATCGATTAGGACACTCTGTC
TCCCGATGGGTGGTCTGATCGAGGAGGGGATCGAGCGCCTGGCCAACATC
GGGGAATCGATGCGATGGATGCCCCACATGATTTACAGAGTCGGCTCCTG
TTCAACCGGGGATCCATGAGGGTGAGGAGCAGTCTCGTTATTGATGCTTT
GCCTGCCGTTGTATGTGCTCGCTGTTACATCGCTGATCATCATCACTCGC
ATTAACTGTTTTCTTCTCCCGTGGTCCCCCCCCTCCTTGTTTGTTAGTGC
CTAGCCATGTATAATGGCCACGCCCACTGGAGCCACATATAACTCACTGG
CCTTCTGTTATTATCCTCGACGTGCCGTGCGGCCGAGCCGTTTATTCGCG
CTCTGTCGCTATTCGCCTCCATCCAAGGCCTTACGTCTCCCCACTCGAAC
TTTCACCGCATCTACACTTACCACACGCAAAAATACTCAGGCACTTTAAG
CTGGACCTCCTCGTGATAGCAACAGCAGTCCAAGAAGTAGCGGGGGAAAC
TTGCTGCTCTACTCTCCCGTCCTGCCCTCTCTTTTTTCCATTCCCACCGG
CATCATCATCGTCATGCAGCCTCTCCCCTCCATTCTCTGTCCCCTCCTCC
TGCTCCTCACTATTGCCTTCCTCCCCCTTGTCAGCTACGCCTTCAAGTAT
CAAATCAATGATAAATATGCCGAAACGGCCAAGTGGTCTTTCACCGAGAC
GTACATGTACGGGTCTGGCAAGGGGCCCCTCGCCTGGAAAGATGGGGTAA
ATAAGTACAACCTTCGGTCCCTTCATCCCTCCCTCCATCCCTATTTCATG
CTTCTTCTTTTTCCATCCCTTCCCTCTTATTCACTATCGCTTTTAAGACC
ATTATGATGGCACCGATATGGCATCCGACTCTCAACGCGATCTCTTACAT
CCCCGCCCTTCATCGATCCATCCCTCCCATCCCTCGCATCAGGACGCCTC
CGTGCATCTGAATCTCTCCCTCCGGATCTCCACTTACGCCGACGAAGAGT
ACGTCAATGTGTCTGTCCTCTTTTACCACGAAGAAGACAGAAGCAAAAGC
ATAGGTGGCAGCGCCAGCAGCGAGGAAGGGGAGACTGCCGAGAACGAGGC
AGGGGGAGCCATCTTCGTTCCTGATGCTGATTTGTGTTCTCTTGAGTTTC
CTCCGGAAGCCTCCGACCGTTCGCTCCACACGTTTGCCGCACACAAAGTC
GATGAAGTGAGTGGGGAGGGTCAGGAATGGGAGGCGCTGGTGCATGCTGA
CTATAAGGTCTTGCAGAGTGGGGTCCAAAATGTGTTGTTCCAAGTGTGTC
CCTCCCTAATGTCCTTGTCCTCGGTGGCATTGGCTGGGGAGATCAGTTTC
AAGAATCCTTATGGGTACTTACCTGGAAGGTTCTACGGTTATCTGCCTTT
TGAGGGTGCGCGCTTTTTTGCGTTTTTGGCCTTTTTTATGCTTTACCTTG
GGATGGTTGTTAAGCATCGCAAGCATTTGTTGCGATTGCATTACGCGATT
CTCGGGGTGTTGGTTGTGGCGACGGCGGAAGCATTGTCATGGTTTCTGGC
ATTTTCGCACATGAACTCGCAAGGAACGCCGTACTGTTGTCCATTTCCGG
CGGTCGTGATAAGCGCGATGGTCTTCGAGTTAATTCAGAAAACAGCGTCA
CGCGCTCTTTTGTTACTGATTTGTTTGGGGTACGGCATTGCGCGGCCGAG
TTTGCAGAAGGGGGAATGGTTCAGTCTTGGGACTTTGACATTGTTGTATT
TGGGTGCGACCATACTGGACGAAGCGAGCGAGATCGGCGAGGCCCAACAG
ATTGGAGGTAGCGGGGGACGGACGGAGAAAGGTGGGGATGGGAGTAACAG
GATGTTATGGTCGTTTCCAGCGTTGCTGTGTGACATTGTATTCCTTTCCT
GGATCTACATGAGCCTGGTGACGATGATGAAGATTCTGCGGGAGCAGAAC
GAGACGTACAAGCTCGAGTTGTACACCCGCCTGTCTTCGACAATCCTCTT
GTTTGTCACCCTCTTTGGATGTCTTACGCTTGTGGTGCTCTTGTCGCGCA
TTGGCTTTTTTGTATGGCCGTGGACGCTGCTCTGGGCCGAGACTGTTGCC
TGGGAAGTCCTGAATTTCGCGGTCCTAGCTGCGGTTTGTTTCTTATGGCG
CCCATCACCCACTAGTCAATTTTTGGCACAAGCGAAGCAGCTACCGACGT
CTGAGGAAGGAAGGGAAGGAGGAGGGGGGGATGAGGAAGGGATTGAGTTC
TCGATCGGTAGTCAGTTTAGTATCACTGATGAGGACGAGGACGAGGATGA
GGGAGGGAACGGCGACCTAAGAGTAGAAAGGAGAGATGCTAGATTCTCAT
GAAAGGAAAAATATGAAGGGAGGTAATGAGGTTATACGTGTATGATGTTT
TTAAGTGTTAATGACAAAAGGGGAAGGGCGAGGTGGAAAATTACAAAGTT
GGGCGATGGAGGAACGAAGATTTAGGTAGGATGATGGGGAGAAACGTTCA
AGATAATTAAGAGACACAGGGGCCTCTCTCCCGTTTCGACGGCGATAAAG
CCGACGCAGTAGGACCCCGTCATAAAATAATTAGAAAGAAAGAATCAAAG
TCAGTGTCTAACTGGGG
back to top

Coding sequence (CDS) from alignment at chr28:385292..388208+

>NO28G01240.1 ID=NO28G01240.1|Name=NO28G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr28:385292..388208+ (Nannochloropsis oceanica)
ATGCAGCCTCTCCCCTCCATTCTCTGTCCCCTCCTCCTGCTCCTCACTAT
TGCCTTCCTCCCCCTTGTCAGCTACGCCTTCAAGTATCAAATCAATGATA
AATATGCCGAAACGGCCAAGTGGTCTTTCACCGAGACGTACATGTACGGG
TCTGGCAAGGGGCCCCTCGCCTGGAAAGATGGGGACGCCTCCGTGCATCT
GAATCTCTCCCTCCGGATCTCCACTTACGCCGACGAAGAGTACGTCAATG
TGTCTGTCCTCTTTTACCACGAAGAAGACAGAAGCAAAAGCATAGGTGGC
AGCGCCAGCAGCGAGGAAGGGGAGACTGCCGAGAACGAGGCAGGGGGAGC
CATCTTCGTTCCTGATGCTGATTTGTGTTCTCTTGAGTTTCCTCCGGAAG
CCTCCGACCGTTCGCTCCACACGTTTGCCGCACACAAAGTCGATGAAGTG
AGTGGGGAGGGTCAGGAATGGGAGGCGCTGGTGCATGCTGACTATAAGGT
CTTGCAGAGTGGGGTCCAAAATGTGTTGTTCCAAGTGTGTCCCTCCCTAA
TGTCCTTGTCCTCGGTGGCATTGGCTGGGGAGATCAGTTTCAAGAATCCT
TATGGGTACTTACCTGGAAGGTTCTACGGTTATCTGCCTTTTGAGGGTGC
GCGCTTTTTTGCGTTTTTGGCCTTTTTTATGCTTTACCTTGGGATGGTTG
TTAAGCATCGCAAGCATTTGTTGCGATTGCATTACGCGATTCTCGGGGTG
TTGGTTGTGGCGACGGCGGAAGCATTGTCATGGTTTCTGGCATTTTCGCA
CATGAACTCGCAAGGAACGCCGTACTGTTGTCCATTTCCGGCGGTCGTGA
TAAGCGCGATGGTCTTCGAGTTAATTCAGAAAACAGCGTCACGCGCTCTT
TTGTTACTGATTTGTTTGGGGTACGGCATTGCGCGGCCGAGTTTGCAGAA
GGGGGAATGGTTCAGTCTTGGGACTTTGACATTGTTGTATTTGGGTGCGA
CCATACTGGACGAAGCGAGCGAGATCGGCGAGGCCCAACAGATTGGAGGT
AGCGGGGGACGGACGGAGAAAGGTGGGGATGGGAGTAACAGGATGTTATG
GTCGTTTCCAGCGTTGCTGTGTGACATTGTATTCCTTTCCTGGATCTACA
TGAGCCTGGTGACGATGATGAAGATTCTGCGGGAGCAGAACGAGACGTAC
AAGCTCGAGTTGTACACCCGCCTGTCTTCGACAATCCTCTTGTTTGTCAC
CCTCTTTGGATGTCTTACGCTTGTGGTGCTCTTGTCGCGCATTGGCTTTT
TTGTATGGCCGTGGACGCTGCTCTGGGCCGAGACTGTTGCCTGGGAAGTC
CTGAATTTCGCGGTCCTAGCTGCGGTTTGTTTCTTATGGCGCCCATCACC
CACTAGTCAATTTTTGGCACAAGCGAAGCAGCTACCGACGTCTGAGGAAG
GAAGGGAAGGAGGAGGGGGGGATGAGGAAGGGATTGAGTTCTCGATCGGT
AGTCAGTTTAGTATCACTGATGAGGACGAGGACGAGGATGAGGGAGGGAA
CGGCGACCTAAGAGTAGAAAGGAGAGATGCTAGATTCTCATGA
back to top
Synonyms
Publications