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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:357060..361450 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01160.1 vs.
Match: EWM20885.1 (d-3-phosphoglycerate dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 695.3 bits (1793), Expect = 1.600e-196 Identity = 344/389 (88.43%), Postives = 368/389 (94.60%), Query Frame = 0
Query: 121 MVMNTPGGNTVSTAQLAFSLLAVSARSLARADMSMKEGKWERSKFMGTELAGKTLAVVGCGRIGQQVARWGQAFDMTVVGFDPVLPAASFKELGIKKCDLDKIWPQADFITLHTPLTPDTKNLVNAESLAQMKKGVHIVNCARGGIVNEMDLLASLEAGHVGGAALDVYEKEPPGESTKKLLAHPNVSCTPHLGASTEEAQVNVAKDIAIQMCDTLESKDFVGVCNVGYMSIAQNQAIRPFADLAQQLGRVASQFALGKITKLTISTWGQTDISITSADARALLKAQALVGLLSTKDTQGVLPGIVNAPFLAEEAGVVGEALKETPALASIASPYRNLITVEAHVEGGGVTSVTGSVFGNEPCLVSLDNYKNFPALNLHDGSVLKFRNR 510
MVMNTPGGNTVSTAQLAFSLLAVSARSLARADMSMK GKWERSK MGTELAGKTLAVVGCGRIGQQVA+WGQAFDM VVGFDPVLPAA+FKELGI+KCDL+K+WPQADFITLHTPLTPDTKNL+N ESL QMKKGVHI+NCARGGIV+EMDLL +LEAGHVGGAALDVYEKEPPGESTKKLLAHPNVSCTPHLGASTEEAQVNVAKDIA+QMCDTLESKDFVGVCNVGYMSIAQN AIRP+ADLAQQLGRVA+QFA+G + K+T+++WGQTDISITS DARALLKAQALVG LST+DT G LPGIVNAPFLAEE GV EAL E PALAS ASPYR+LITV AHVEGGG TSVTGSVFG+EPCLVSLD+YKNFPALNLH+GSVLKFRN+
Sbjct: 1 MVMNTPGGNTVSTAQLAFSLLAVSARSLARADMSMKAGKWERSKLMGTELAGKTLAVVGCGRIGQQVAKWGQAFDMKVVGFDPVLPAAAFKELGIQKCDLEKVWPQADFITLHTPLTPDTKNLINRESLQQMKKGVHIINCARGGIVHEMDLLEALEAGHVGGAALDVYEKEPPGESTKKLLAHPNVSCTPHLGASTEEAQVNVAKDIAVQMCDTLESKDFVGVCNVGYMSIAQNHAIRPYADLAQQLGRVATQFAMGTVWKITLASWGQTDISITSPDARALLKAQALVGFLSTQDTHGTLPGIVNAPFLAEELGVETEALTEAPALASAASPYRSLITVVAHVEGGGATSVTGSVFGHEPCLVSLDHYKNFPALNLHEGSVLKFRNK 389
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01160.1 ID=NO28G01160.1|Name=NO28G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp ACTACAACGTTGTGGCCGATGGTGCGATCAACCTGGTCAGCACCCAGGCG AAAGATGCCTCAGACTACAGTTCTTGTCGTCTTTGTTTCCTTTGAAATGG CGCACCTATTATACTGTTTTGCTCCAAAACACAATCGGGAAGCGAAATAG CACAACACGATAGTGATAAGAAGAGTGGGGGGGAGGTCGGCTGGGAGGAG AAAGGGACACGGCATGTCTCATGCTCTCTTTGAGCTAGTGGCATACACTG TCTCCTTGCAATACCAATGTATCTGCATTTAGGCATATATACACCCAACA CACATCCAACACACAAATCCAAGCACCAAAGAGAGGGTCGTGGAACAACG CCCCAACGCCACTCGGATTTGTTGAAGTACTCGTTCATCTGTCGCCCGTC GACGCTCATCTTCTCCTCCATCCGCCTAACGCTGGCGCACCCTTGCTTGC CCATGTGACCATCCTCTTCACTTTTTTTCGGTCCCTCACTCCTCGTTTTC ATACCCTTTTAATCTCTTGTCAACCTGCATACGGAAACATTCCCCTATCA GCTCAAACAAGCATGATGATGCGTCGGGCCCTGCAGCGCGGCAGCAGCGT CGGCGGGCATTACCTGCAGCAAACCCAGAGGGCCCACCTACACGCATCTC GGCCTACCTTGGCCAAGATTTTGTGTGCGGATAGCATTGACCCGGTGTGC ATCCAAATCTTTAAGGAGCGTGGACATGAAGTTGATTACAAAGTGGGCTT GTCGAAGGAAGAATTGTTGAACATAATCCCTCAATATCACGGCCTCGTCG TCCGCTCTGCTACCAAGGTGACGGGCGATGTGATCGCCGCTGCTGACAAG CTTGTCGTCATCGGCCGGGCCGGAGTTGGTGTAGACAATATCGACCTCCC TGCCGCCACTAAGAAGGGTGTAATGGTGATGAATACTCCCGGCGGCAACA CCGTCTCAACGGCCCAGCTTGCCTTCTCTCTTCTGGCCGTTTCTGCACGG TCGTTGGCGCGCGCGGACATGTCGATGAAGGAGGGGAAGTGGGAGAGGAG CAAGTTCATGGGCACGGAACTGGCGGGGAAGACGCTGGCCGTCGTCGGGT GTGGTCGCATAGGGCAGCAGGTCGCCAGGTGGGGTCAGGCCTTCGACATG ACCGTGGTGGGCTTTGATCCCGTACTACCCGCGGCGTCCTTCAAGGAGCT GGGCATCAAGAAATGCGACCTGGACAAGATCTGGCCGCAGGCTGACTTCA TCACCCTCCACACACCCCTAACGCCCGACACCAAGAACCTGGTCAACGCG GAGAGCTTGGCGCAGATGAAGAAAGGGGTGCACATTGTCAACTGTGCGCG GGGGGGGATCGTGAATGAGATGGACTTGTTGGCCTCCTTGGAGGCAGGGC ACGTGGGCGGCGCGGCTCTGGATGTGTATGAGAAGGAACCGCCCGGAGAG AGCACCAAGAAATTGCTCGCGCACCCCAACGTCAGCTGTACCCCCCACCT GGGCGCCAGCACGGAGGAAGCGCAGGTCAACGTGGCCAAGGACATCGCCA TCCAGATGTGCGATACTCTCGAGAGCAAAGATTTCGTGGGCGTGTGCAAT GTGGGCTACATGTCCATCGCTCAGAACCAGGCCATCCGACCATTCGCGGA CCTGGCGCAACAACTCGGTCGAGTCGCATCTCAGTTTGCCCTCGGGAAGA TCACGAAACTCACCATCTCCACCTGGGGCCAGACGGACATAAGCATCACG AGTGCCGACGCCCGGGCCCTCCTCAAGGCCCAGGCCCTCGTCGGCCTCCT CTCCACCAAGGACACCCAGGGCGTACTGCCGGGTATTGTGAACGCGCCCT TTTTGGCGGAAGAGGCGGGGGTGGTGGGGGAGGCACTGAAGGAGACGCCG GCCTTGGCCAGCATTGCGAGCCCGTACCGTAACCTTATCACGGTGGAGGC GCACGTGGAGGGGGGAGGGGTAACCTCTGTGACTGGATCTGTCTTTGGAA ATGAACCCTGCCTTGTGAGCTTGGACAACTACAAGAATTTCCCGGCGTTG AACTTGCACGATGGCTCCGTACTCAAGTTCAGGAATAGGGACGAGCCCGG GGCTGTTTCGGGCGTGCTGGAGGTGCTGGAGGAGCACAAGGTCAACATCG CAAATCTGACCTTGGGACGGCAAGATGCTGACTTGGCGCTGTGCCTGATG AGCGTGGATGGGGAGGTGCCCGCAGCCGCAGTAGAGCAGCTGAAGGGCCT GGCTCAATTGAACGACGTGCGTACGGCCAAGCTGGGAGGTAATGTATGAA AGAGAGGAGGGGAGGG back to topprotein sequence of NO28G01160.1 >NO28G01160.1-protein ID=NO28G01160.1-protein|Name=NO28G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp MMMRRALQRGSSVGGHYLQQTQRAHLHASRPTLAKILCADSIDPVCIQIF KERGHEVDYKVGLSKEELLNIIPQYHGLVVRSATKVTGDVIAAADKLVVI GRAGVGVDNIDLPAATKKGVMVMNTPGGNTVSTAQLAFSLLAVSARSLAR ADMSMKEGKWERSKFMGTELAGKTLAVVGCGRIGQQVARWGQAFDMTVVG FDPVLPAASFKELGIKKCDLDKIWPQADFITLHTPLTPDTKNLVNAESLA QMKKGVHIVNCARGGIVNEMDLLASLEAGHVGGAALDVYEKEPPGESTKK LLAHPNVSCTPHLGASTEEAQVNVAKDIAIQMCDTLESKDFVGVCNVGYM SIAQNQAIRPFADLAQQLGRVASQFALGKITKLTISTWGQTDISITSADA RALLKAQALVGLLSTKDTQGVLPGIVNAPFLAEEAGVVGEALKETPALAS IASPYRNLITVEAHVEGGGVTSVTGSVFGNEPCLVSLDNYKNFPALNLHD GSVLKFRNRDEPGAVSGVLEVLEEHKVNIANLTLGRQDADLALCLMSVDG EVPAAAVEQLKGLAQLNDVRTAKLGGNV* back to topmRNA from alignment at chr28:357060..361450+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01160.1 ID=NO28G01160.1|Name=NO28G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4391bp|location=Sequence derived from alignment at chr28:357060..361450+ (Nannochloropsis oceanica) ACTACAACGTTGTGGCCGATGGTGCGATCAACCTGGTCAGCACCCAGGCG
AAAGATGCCTCAGACTACAGTTCTTGTCGTCTTTGTTTCCTTTGAAATGG
CGCACCTATTATACTGTTTTGCTCCAAAACACAATCGGGAAGCGAAATAG
CACAACACGATAGTGATAAGAAGAGTGGGGGGGAGGTCGGCTGGGAGGAG
AAAGGGACACGGCATGTCTCATGCTCTCTTTGAGCTAGTGGCATACACTG
TCTCCTTGCAATACCAATGTATCTGCATTTAGGCATATATACACCCAACA
CACATCCAACACACAAATCCAAGCACCAAAGAGAGGGTCGTGGAACAACG
CCCCAACGCCACTCGGATTTGTTGAAGTACTCGTTCATCTGTCGCCCGTC
GACGCTCATCTTCTCCTCCATCCGCCTAACGCTGGCGCACCCTTGCTTGC
CCATGTGACCATCCTCTTCACTTTTTTTCGGTCCCTCACTCCTCGTTTTC
ATACCCTTTTAATCTCTTGTCAACCTGCATACGGAAACATTCCCCTATCA
GCTCAAACAAGCATGATGATGCGTCGGGCCCTGCAGCGCGGCAGCAGCGT
CGGCGGGCATTACCTGCAGCAAACCCAGAGGGCCCACCTACACGCATCTC
GGCCTACCTTGGCCAAGATTTTGTGTGCGGATAGCATTGACCCGGTAAGA
AGAGATGGGGGGAAAGGAAGGAGAGAGGGATGAAGGGTGACCTTGTTTGG
GCGCCATGTGGGGGGCGTCGTGCAGGCGAAAGCAAGTTGATGATGCATGT
GAGTGTGTGGAAGCAAGGGAAGGGACATACGGACATGCGTGCATTGCAGG
CTCAACGCTGCATGTTGCTGTTCCAGCACGGCAAATAAGAAGAGGATAGG
AGATATGTAACCATGTCTTTTAGAACATGAAGTGGATCACACTTTTTGGT
CCAGCTGACTTTAATAATATGGTTGGTAGCAGCAGTAGTTTGTTCCTCGG
AAGACGAGCATCTTACACATCACCTCTCCCTCCTTCCCGTCCTTCCATCA
TTCTTCCCAGGTGTGCATCCAAATCTTTAAGGAGCGTGGACATGAAGTTG
ATTACAAAGTGGGCTTGTCGAAGGAAGAATTGTTGAACATAATCCCTCAA
TATCACGGCCTCGTCGTCCGCTCTGCTACCAAGGTATGTCCTTCTCTCCT
TCCCTCCTTCCTTCCCTCCCGTCCCTCCCTCCCTCCATTTCCTCTTCTTT
TGTCCGTCCATCGTTCTTTCTATGCCCTTTTAGTCATATGAGGCCCGTAT
GAACAACACTCATCCTCCCTCCCTTCCTTCCTCTTCCTCAGGTGACGGGC
GATGTGATCGCCGCTGCTGACAAGCTTGTCGTCATCGGCCGGGCCGGAGT
TGGTGTAGACAATATCGACCTCCCTGCCGCCACTAAGAAGGGTGTAATGG
TGATGAATACTCCCGGTAAGTCAATCTTCCCTCTCTCCCTGCCCCCCTCC
CTCCTCCCCTCAGGTGTGCCTTTCCTCATTCCCTTCTTTCTTCGTCCCCT
CCCTCATGTTAGGCGGCAACACCGTCTCAACGGCCCAGCTTGCCTTCTCT
CTTCTGGCCGTTTCTGCACGGTCGTTGGCGCGCGCGGACATGTCGATGAA
GGAGGGGAAGTGGGAGAGGAGCAAGTTCATGGGCACGGAACTGGCGGGGA
AGACGCTGGCCGTCGTCGGGTGTGGTCGCATAGGGCAGCAGGTCGCCAGG
TGGGGTCAGGTGAGTTGCATATACTTGAATATAGATATTTAGCGTATTTA
TTCAGTAATTTGAATTTGATTTAACATTTTGGTTTTTCATTTGAAGTCAT
TTCTTTGGGTGTTTCAAAATAGGACTAGGGAATAATTCATTCTTCCTCCC
GCCCCCCCTTTCCTCCATCCCTCCCTCCAGTCATCCCACCCCTCTGCCTT
TCTTTTTCTGTAACATCCGCCAATACGTATCTCACGCCTCCCTCCCTCCC
TCTCTCTCTCCCTCCCTCCCTGGCAGGCCTTCGACATGACCGTGGTGGGC
TTTGATCCCGTACTACCCGCGGCGTCCTTCAAGGTGGCAGGGAGGGAGGG
AGGGAGGGAGGAAGAGAGGAAGGGAGAGAGATTGAGGATAATCTCAGTTG
ATTGGTATATTTTTAATGCACATAAAGTCATGCAATTTATATCCTCTTCC
TTATTTCTTTATTTAATTATGTAATTATTTATTATTATATTTATTTATGG
ATTGATTGATTGATCTATTATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTTTATATATATATATATGTATATATATTTATCCACAGG
AGCTGGGCATCAAGAAATGCGACCTGGACAAGATCTGGCCGCAGGCTGAC
TTCATCACCCTCCACACACCCCTAACGCCCGACACCAAGAACCTGGTCAA
CGCGGAGAGCTTGGCGCAGATGAAGAAAGGGGTGCACATTGTCAACTGTG
CGCGGGGGGGGATCGTGAATGAGATGGACTTGTTGGCCTCCTTGGAGGCA
GGGCACGTGGGCGGCGCGGCTCTGGATGTGTATGAGAAGGTAAGGAAGGG
GGGAGGGGGAAAGAGTGAGGGGGAGGGAGAGCAAGCAAGAGGTGGTTTCG
GTTCCCTTTGACCGCGTGCTCATAACTTCCACCCCTCCCTCCCTCCCTCC
CTCCCCGGGCACAGGAACCGCCCGGAGAGAGCACCAAGAAATTGCTCGCG
CACCCCAACGTCAGCTGTACCCCCCACCTGGGCGCCAGCACGGAGGAAGC
GCAGGTCAACGTGGCCAAGGACATCGCCATCCAGATGTGCGATACTCTCG
AGAGCAAAGTATGTTCGTCGGGAACGGGTGTTTCCCTCCTCCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCTTTCCTCCCTTCCTCCCTCCCTCGGTATC
AGAATCATTTCCCCTGTCAACCAAACATTATAACCACGACATAACCCTCC
CTCCCTCCTTTCCTCCCCCCCTCCAGGATTTCGTGGGCGTGTGCAATGTG
GGCTACATGTCCATCGCTCAGAACCAGGCCATCCGACCATTCGCGGACCT
GGCGCAACAACTCGGTCGAGTCGCATCTCAGTTTGCCCTCGGGAAGATCA
CGAAACTCACCATCTCCACCTGGGGCCAGACGGACATAAGCATCACGAGT
GCCGACGCCCGGGCCCTCCTCAAGGCCCAGGCCCTCGTCGGCCTCCTCTC
CACCAAGGACACCCAGGGCGTACTGCCGGGTATTGTGAACGCGCCCTTTT
TGGCGGAAGAGGCGGGGGTGGTGGGGGAGGCACTGAAGGAGACGCCGGCC
TTGGCCAGCATTGCGAGCCCGTACCGTAACCTTATCACGGTGGAGGCGCA
CGTGGAGGGGGGAGGGGTAACCTCTGTGACTGGATCTGTCTTTGGAAATG
AACCCTGCCTTGTGAGCTTGGACAACTACAAGAATTTCCCGGCGTTGAAC
TTGCACGATGGCTCCGTACTCAAGTTCAGGAATAGGGTATGTCCTCTCAC
TCCCCCCCTCCCTTCCTCTCCCTTTCCAGCATGCGTGTGTGGGGATGAAT
GAGCCTGTATAGTGTGCTTGGGGAGCACGTGAAGAGGACTACGTGGACAC
TGAATCTGTATGGCGGTATGGGCATGTGGGCATGATAGCCAGGTGCTAAA
GTTTAAAAGTTATGCTGGGTTAGAGCACAACTCATCGGAGAGATGCCTAC
TCAAGCCTTCCGTCGGTTTTTCTCTCCCTCCCTCCCTCCCACCCTCCTTG
TTTTGTGTGTTAAGATTACACTAACATAAAAGCCTCTCTTGGGCTGTTTC
CTCTGTGCTTGAAGAAGGTATCGGATGTATTCCACTTCCATTGTGTGAAG
GAGAAATCGATATGCCTCCTGACTCTATTCCCTCCCTGCCTCCCTCCCTC
TCTTGCTTCACAGGACGAGCCCGGGGCTGTTTCGGGCGTGCTGGAGGTGC
TGGAGGAGCACAAGGTGGGTCGATTTAAGCGTGGGGACAGGAAGGGGAAG
GGACGTAGGAACGGAGGGACGGAGGAGGCGTGTCGCGCATGTTTACCTGG
GAAAGAGCAATGGTGTCTATGATAGAGCGTCTTTAATCTCATTCTCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTTTCCCCCAGGTCAACATCGCAAATCTGACCTTGGGACGGCAAGA
TGCTGACTTGGCGCTGTGCCTGATGAGCGTGGATGGGGAGGTGCCCGCAG
CCGCAGTAGAGCAGCTGAAGGGCCTGGCTCAATTGAACGACGTGCGTACG
GCCAAGCTGGGAGGTAATGTATGAAAGAGAGGAGGGGAGGG back to topCoding sequence (CDS) from alignment at chr28:357060..361450+ >NO28G01160.1 ID=NO28G01160.1|Name=NO28G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr28:357060..361450+ (Nannochloropsis oceanica) ATGATGATGCGTCGGGCCCTGCAGCGCGGCAGCAGCGTCGGCGGGCATTA CCTGCAGCAAACCCAGAGGGCCCACCTACACGCATCTCGGCCTACCTTGG CCAAGATTTTGTGTGCGGATAGCATTGACCCGGTGTGCATCCAAATCTTT AAGGAGCGTGGACATGAAGTTGATTACAAAGTGGGCTTGTCGAAGGAAGA ATTGTTGAACATAATCCCTCAATATCACGGCCTCGTCGTCCGCTCTGCTA CCAAGGTGACGGGCGATGTGATCGCCGCTGCTGACAAGCTTGTCGTCATC GGCCGGGCCGGAGTTGGTGTAGACAATATCGACCTCCCTGCCGCCACTAA GAAGGGTGTAATGGTGATGAATACTCCCGGCGGCAACACCGTCTCAACGG CCCAGCTTGCCTTCTCTCTTCTGGCCGTTTCTGCACGGTCGTTGGCGCGC GCGGACATGTCGATGAAGGAGGGGAAGTGGGAGAGGAGCAAGTTCATGGG CACGGAACTGGCGGGGAAGACGCTGGCCGTCGTCGGGTGTGGTCGCATAG GGCAGCAGGTCGCCAGGTGGGGTCAGGCCTTCGACATGACCGTGGTGGGC TTTGATCCCGTACTACCCGCGGCGTCCTTCAAGGAGCTGGGCATCAAGAA ATGCGACCTGGACAAGATCTGGCCGCAGGCTGACTTCATCACCCTCCACA CACCCCTAACGCCCGACACCAAGAACCTGGTCAACGCGGAGAGCTTGGCG CAGATGAAGAAAGGGGTGCACATTGTCAACTGTGCGCGGGGGGGGATCGT GAATGAGATGGACTTGTTGGCCTCCTTGGAGGCAGGGCACGTGGGCGGCG CGGCTCTGGATGTGTATGAGAAGGAACCGCCCGGAGAGAGCACCAAGAAA TTGCTCGCGCACCCCAACGTCAGCTGTACCCCCCACCTGGGCGCCAGCAC GGAGGAAGCGCAGGTCAACGTGGCCAAGGACATCGCCATCCAGATGTGCG ATACTCTCGAGAGCAAAGATTTCGTGGGCGTGTGCAATGTGGGCTACATG TCCATCGCTCAGAACCAGGCCATCCGACCATTCGCGGACCTGGCGCAACA ACTCGGTCGAGTCGCATCTCAGTTTGCCCTCGGGAAGATCACGAAACTCA CCATCTCCACCTGGGGCCAGACGGACATAAGCATCACGAGTGCCGACGCC CGGGCCCTCCTCAAGGCCCAGGCCCTCGTCGGCCTCCTCTCCACCAAGGA CACCCAGGGCGTACTGCCGGGTATTGTGAACGCGCCCTTTTTGGCGGAAG AGGCGGGGGTGGTGGGGGAGGCACTGAAGGAGACGCCGGCCTTGGCCAGC ATTGCGAGCCCGTACCGTAACCTTATCACGGTGGAGGCGCACGTGGAGGG GGGAGGGGTAACCTCTGTGACTGGATCTGTCTTTGGAAATGAACCCTGCC TTGTGAGCTTGGACAACTACAAGAATTTCCCGGCGTTGAACTTGCACGAT GGCTCCGTACTCAAGTTCAGGAATAGGGACGAGCCCGGGGCTGTTTCGGG CGTGCTGGAGGTGCTGGAGGAGCACAAGGTCAACATCGCAAATCTGACCT TGGGACGGCAAGATGCTGACTTGGCGCTGTGCCTGATGAGCGTGGATGGG GAGGTGCCCGCAGCCGCAGTAGAGCAGCTGAAGGGCCTGGCTCAATTGAA CGACGTGCGTACGGCCAAGCTGGGAGGTAATGTATGA back to top
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