NO28G00990.1, NO28G00990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00990.1
Unique Name	NO28G00990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2022
Alignment location	chr28:317871..320274 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:317871..320274 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G00990.1 vs.
Match: CBN76135.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 295.4 bits (755), Expect = 3.000e-76
Identity = 142/278 (51.08%), Postives = 192/278 (69.06%), Query Frame = 0

Query:   92 TAAYEVLFVRHGQSTWNRDNRFIGWTDVPLTEQGLEEAREAGRVLAREGVKVDEVHTSLLKRCIKTAWTILRELGQEYTPVHCHWRLNERSYGSLVGLEKKSTVARHGVETVRTWRRSFDVRPPPQRMDDKYWPGKDKKYKKLLASGTLPRIPAAECLKDVKERAAAHWEEVVVPAIKAGKRVVVVGHENNLRALFMHIDQVAPEDMLHVEIPRAAPLRYQFDAQMKPVRQAEPAPFLTGQFLISAE-------NVAAVKERDSRQVYDLRITSNLEK 363
            T AYEV+FVRHGQSTWN+ NRFIGWTD  LTE+G  EAR AG++L  +  + D ++TS+LKR IKTAW +L EL Q++ PV   W LNER YG+LVG EKK  V   G E V+ WRRS+D+ PPP     K WPG + +YK L+  G   ++P  E LKDV  R++A+W+EV+ PAI++GKRV V GHENNLR+L  +ID ++  D++HVE+PRA PL Y  D  ++P+R A  A  L+G ++   E        +AA++ERD + VYDL +++NLE+
Sbjct:   19 THAYEVVFVRHGQSTWNKANRFIGWTDAELTEEGEIEARVAGQLLLSQEFEFDVIYTSMLKRAIKTAWVVLDELNQQHVPVTTDWHLNERCYGALVGREKKECVRSFGAEQVKIWRRSWDIPPPPIDKSSKLWPGNNPRYKFLMQDGE-SQVPLHESLKDVMSRSSAYWDEVIAPAIRSGKRVCVCGHENNLRSLLKYIDGISNADIMHVELPRAVPLVYHLDEDLRPMRLANSAEHLSGGYVGDPEEDGTPHPKIAAIQERDRKNVYDLSVSTNLEE 295

The following BLAST results are available for this feature:

BLAST of NO28G00990.1 vs.

BLAST of NO28G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN76135.1	3.000e-76	51.08	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00990	NO28G00990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00990.1	NO28G00990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00990.1.cds1	NO28G00990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00990.1.cds2	NO28G00990.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00990.1.cds3	NO28G00990.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:317871..320274-
coding sequence from alignment at chr28:317871..320274-

mRNA sequence

>NO28G00990.1 ID=NO28G00990.1|Name=NO28G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp
TAAGATCAAGGAACAAAGTGCCTACACACTTTTCCAACATTCGACAATAC
AAAATACAGTCAGAACGCCTTCATGCACGTATGAGTAGCGTCCTTCTTCG
CACCAGCGTAAGCACCACCGCCTTGCGAGCCTCTGGTTTCCCCTCCGATT
GCGTCGGATCACTTTCCCCCCAAGCACTGCTTGCACAACCAGAACTCAAC
TCAAGGACAACACTGGCGTTTTCCACGCGACACCACCAGCCCCAGCAGCA
AACCCCCATACCCTTGGGATCATCGCCCTCTTCTCCCCAGTCCCCTTTCA
CTGCTGATTTCGCTCAGCAGGCCTCCCTCCCGTCTCCCTCCCCTACCCCG
GCTACTGCTGCATACGAGGTCCTCTTTGTGCGTCACGGGCAGTCAACGTG
GAATCGGGACAATAGGTTCATTGGTTGGACCGATGTGCCGTTGACAGAAC
AAGGATTAGAGGAAGCAAGGGAGGCAGGGCGAGTGCTGGCCCGGGAGGGA
GTGAAAGTCGACGAGGTTCACACGAGCCTCCTCAAGCGCTGCATCAAAAC
GGCCTGGACTATCCTCCGTGAACTGGGACAAGAGTACACTCCCGTGCACT
GCCACTGGCGGCTGAACGAACGCAGCTATGGGTCCTTGGTTGGGCTGGAA
AAGAAATCTACAGTTGCTAGGCACGGCGTGGAGACAGTGAGGACCTGGCG
CAGATCTTTCGATGTCCGTCCCCCGCCTCAACGTATGGACGATAAATACT
GGCCCGGAAAGGACAAGAAATATAAGAAATTGCTTGCGAGTGGGACACTT
CCACGAATTCCCGCGGCAGAGTGCTTGAAGGACGTGAAGGAGCGTGCTGC
GGCCCATTGGGAGGAGGTGGTGGTGCCGGCCATCAAGGCCGGGAAGCGTG
TCGTTGTCGTTGGGCACGAAAATAATTTAAGGGCATTGTTTATGCACATT
GACCAGGTCGCACCAGAAGATATGCTGCACGTGGAGATTCCTCGAGCGGC
ACCCTTGAGGTATCAATTCGACGCCCAGATGAAGCCCGTGAGGCAGGCGG
AGCCCGCCCCCTTCCTAACGGGACAGTTCCTGATATCGGCGGAGAACGTT
GCGGCGGTCAAAGAGAGGGATTCAAGACAAGTGTATGATCTAAGAATTAC
CTCTAACTTGGAAAAAGGGAGTGGCAGTCGGAGGTGGGTGGAGGAACAGC
CGCAGCAGGCGAAGAAGGAGGAGCAAGAGGAGCAGGTGCGGAGGGGGCAG
CAGCTGCGACTGAATCGGACGGGCTTGAGCATCAATGCTCTGAGAGGTAT
CAAGGCGTCTTGGATTTCCTTGCCGGACGAGCGCGGCACTACTGGTGCTT
CTCCAGATTCCCCAGCTGCTGCTGCTGGTACTTCGGGAGGGTCGCCCGAG
ACGATGAAAAGAGTGCTGAGATTGTTCGATCCCGATCAGAACCTGTGGCG
CTTTACCTATCCCTCCCTTTGAAGAGGCAAATGGATGGAGCGAAGGCAAG
AAGAGGGGTACGAAAAAGAACAGCAGTAGAAATATTATGTAGAAGAGAAG
GAGCACATTAGTGCATGAAGGGGTGATGTATGTTGTTGTGTATATGTCAA
AAATCGACATCGAGAAAGTGTAGTTGCCGGTCAACAATGAGATGGAAAGA
TTGAATATGCAGACATGTAGGGCATGACTTAGAAAGGAGGTGCAACACAA
TAGCAGCCTGCAGCAACAGCTGCAGCAAGAGCAACGATTGAATATGCAGA
CATGTAGGGCATGACTTAGAAAGGAGGTGCAACACAATAGCAGCCTGCAG
CTACAGCTGCAGCAAGAGCAACTGAAAAATGTCGACTCAAACGACAGCAG
AGGTAATTAACGAGGAACAGAGAGAGCGGGGGGGCCTTGGGGTCGAGGTT
CAGGCACCTGCTTCACCAGCGACCAATACAGAAAATGGAATAACGGAGTC
ACTCCGAGCTGTGATGATAATGACGACGCGCGACAAAAAAACAAAAAAAC
AAATGAGCATTAAAGTAAAAAG

protein sequence of NO28G00990.1

>NO28G00990.1-protein ID=NO28G00990.1-protein|Name=NO28G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MSSVLLRTSVSTTALRASGFPSDCVGSLSPQALLAQPELNSRTTLAFSTR
HHQPQQQTPIPLGSSPSSPQSPFTADFAQQASLPSPSPTPATAAYEVLFV
RHGQSTWNRDNRFIGWTDVPLTEQGLEEAREAGRVLAREGVKVDEVHTSL
LKRCIKTAWTILRELGQEYTPVHCHWRLNERSYGSLVGLEKKSTVARHGV
ETVRTWRRSFDVRPPPQRMDDKYWPGKDKKYKKLLASGTLPRIPAAECLK
DVKERAAAHWEEVVVPAIKAGKRVVVVGHENNLRALFMHIDQVAPEDMLH
VEIPRAAPLRYQFDAQMKPVRQAEPAPFLTGQFLISAENVAAVKERDSRQ
VYDLRITSNLEKGSGSRRWVEEQPQQAKKEEQEEQVRRGQQLRLNRTGLS
INALRGIKASWISLPDERGTTGASPDSPAAAAGTSGGSPETMKRVLRLFD
PDQNLWRFTYPSL*

mRNA from alignment at chr28:317871..320274-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00990.1 ID=NO28G00990.1|Name=NO28G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp|location=Sequence derived from alignment at chr28:317871..320274- (Nannochloropsis oceanica)
TAAGATCAAGGAACAAAGTGCCTACACACTTTTCCAACATTCGACAATAC
AAAATACAGTCAGAACGCCTTCATGCACGTATGAGTAGCGTCCTTCTTCG
CACCAGCGTAAGCACCACCGCCTTGCGAGCCTCTGGTTTCCCCTCCGATT
GCGTCGGATCACTTTCCCCCCAAGCACTGCTTGCACAACCAGAACTCAAC
TCAAGGACAACACTGGCGTTTTCCACGCGACACCACCAGCCCCAGCAGCA
AACCCCCATACCCTTGGGATCATCGCCCTCTTCTCCCCAGTCCCCTTTCA
CTGCTGATTTCGCTCAGCAGGCCTCCCTCCCGTCTCCCTCCCCTACCCCG
GCTACTGCTGCATACGAGGTCCTCTTTGTGCGTCACGGGCAGTCAACGTG
GAATCGGGACAATAGGTTCATTGGTTGGACCGATGTGCCGTTGACAGAAC
AAGGATTAGAGGAAGCAAGGGAGGCAGGGCGAGTGCTGGCCCGGGAGGGA
GTGAAAGTCGACGAGGTAAGTTCTGTTTACAAAGAGGGCGGGATGGAAGG
GGTATTAATTCTGGAGCAATTTGAGCCGGAGTAGTCGGAGGGCCCAAGGG
CTTGAAGGTACACGATGGCCACCATGGCTTACGTTCATTTGGGAAAAAAA
TACGATCGTGATACAGACAACCACAAACTCGCCCTTCTTACTCATTCCCT
CTCTCCCCCCCCTCCGCAGGTTCACACGAGCCTCCTCAAGCGCTGCATCA
AAACGGCCTGGACTATCCTCCGTGAACTGGGACAAGAGTACACTCCCGTG
CACTGCCACTGGCGGCTGAACGAACGCAGCTATGGGTCCTTGGTTGGGCT
GGAAAAGAAATCTACAGTTGCTAGGCACGGCGTGGAGACAGTGAGGACCT
GGCGCAGATCTTTCGATGTCCGTCCCCCGCCTCAACGTATGGACGATAAA
TACTGGCCCGGAAAGGACAAGAAATATAAGAAATTGCTTGCGAGTGGGAC
ACTTCCACGAATTCCCGCGGCAGAGTGCTTGAAGGACGTGAAGGAGCGTG
CTGCGGCCCATTGGGAGGAGGTGGTGGTGCCGGCCATCAAGGCCGGGAAG
CGTGTCGTTGTCGTTGGGCACGAAAATAATTTAAGGGCATTGTTTATGCA
CATTGACCAGGTCGCACCAGAAGATATGCTGCACGTGGAGATTCCTCGAG
CGGCACCCTTGAGGTATCAATTCGGTATGTCCTCCCAAAAAAGATAAATT
GAGTTCATGGTTGGTGGAGCCTCCTTCGCTCCCATTCACGTGCTCCTCCC
TCCCTCCCTTCCTCCCATCTTTTCTTTTTCTGTCATCATTATATTCCTCT
TACGTCTCTCTTCCCCCTCCTTCCTGTCCTTTCCCCCTCCCTCCTTTACC
AGACGCCCAGATGAAGCCCGTGAGGCAGGCGGAGCCCGCCCCCTTCCTAA
CGGGACAGTTCCTGATATCGGCGGAGAACGTTGCGGCGGTCAAAGAGAGG
GATTCAAGACAAGTGTATGATCTAAGAATTACCTCTAACTTGGAAAAAGG
GAGTGGCAGTCGGAGGTGGGTGGAGGAACAGCCGCAGCAGGCGAAGAAGG
AGGAGCAAGAGGAGCAGGTGCGGAGGGGGCAGCAGCTGCGACTGAATCGG
ACGGGCTTGAGCATCAATGCTCTGAGAGGTATCAAGGCGTCTTGGATTTC
CTTGCCGGACGAGCGCGGCACTACTGGTGCTTCTCCAGATTCCCCAGCTG
CTGCTGCTGGTACTTCGGGAGGGTCGCCCGAGACGATGAAAAGAGTGCTG
AGATTGTTCGATCCCGATCAGAACCTGTGGCGCTTTACCTATCCCTCCCT
TTGAAGAGGCAAATGGATGGAGCGAAGGCAAGAAGAGGGGTACGAAAAAG
AACAGCAGTAGAAATATTATGTAGAAGAGAAGGAGCACATTAGTGCATGA
AGGGGTGATGTATGTTGTTGTGTATATGTCAAAAATCGACATCGAGAAAG
TGTAGTTGCCGGTCAACAATGAGATGGAAAGATTGAATATGCAGACATGT
AGGGCATGACTTAGAAAGGAGGTGCAACACAATAGCAGCCTGCAGCAACA
GCTGCAGCAAGAGCAACGATTGAATATGCAGACATGTAGGGCATGACTTA
GAAAGGAGGTGCAACACAATAGCAGCCTGCAGCTACAGCTGCAGCAAGAG
CAACTGAAAAATGTCGACTCAAACGACAGCAGAGGTAATTAACGAGGAAC
AGAGAGAGCGGGGGGGCCTTGGGGTCGAGGTTCAGGCACCTGCTTCACCA
GCGACCAATACAGAAAATGGAATAACGGAGTCACTCCGAGCTGTGATGAT
AATGACGACGCGCGACAAAAAAACAAAAAAACAAATGAGCATTAAAGTAA
AAAG

Coding sequence (CDS) from alignment at chr28:317871..320274-

>NO28G00990.1 ID=NO28G00990.1|Name=NO28G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr28:317871..320274- (Nannochloropsis oceanica)
ATGAGTAGCGTCCTTCTTCGCACCAGCGTAAGCACCACCGCCTTGCGAGC
CTCTGGTTTCCCCTCCGATTGCGTCGGATCACTTTCCCCCCAAGCACTGC
TTGCACAACCAGAACTCAACTCAAGGACAACACTGGCGTTTTCCACGCGA
CACCACCAGCCCCAGCAGCAAACCCCCATACCCTTGGGATCATCGCCCTC
TTCTCCCCAGTCCCCTTTCACTGCTGATTTCGCTCAGCAGGCCTCCCTCC
CGTCTCCCTCCCCTACCCCGGCTACTGCTGCATACGAGGTCCTCTTTGTG
CGTCACGGGCAGTCAACGTGGAATCGGGACAATAGGTTCATTGGTTGGAC
CGATGTGCCGTTGACAGAACAAGGATTAGAGGAAGCAAGGGAGGCAGGGC
GAGTGCTGGCCCGGGAGGGAGTGAAAGTCGACGAGGTTCACACGAGCCTC
CTCAAGCGCTGCATCAAAACGGCCTGGACTATCCTCCGTGAACTGGGACA
AGAGTACACTCCCGTGCACTGCCACTGGCGGCTGAACGAACGCAGCTATG
GGTCCTTGGTTGGGCTGGAAAAGAAATCTACAGTTGCTAGGCACGGCGTG
GAGACAGTGAGGACCTGGCGCAGATCTTTCGATGTCCGTCCCCCGCCTCA
ACGTATGGACGATAAATACTGGCCCGGAAAGGACAAGAAATATAAGAAAT
TGCTTGCGAGTGGGACACTTCCACGAATTCCCGCGGCAGAGTGCTTGAAG
GACGTGAAGGAGCGTGCTGCGGCCCATTGGGAGGAGGTGGTGGTGCCGGC
CATCAAGGCCGGGAAGCGTGTCGTTGTCGTTGGGCACGAAAATAATTTAA
GGGCATTGTTTATGCACATTGACCAGGTCGCACCAGAAGATATGCTGCAC
GTGGAGATTCCTCGAGCGGCACCCTTGAGGTATCAATTCGACGCCCAGAT
GAAGCCCGTGAGGCAGGCGGAGCCCGCCCCCTTCCTAACGGGACAGTTCC
TGATATCGGCGGAGAACGTTGCGGCGGTCAAAGAGAGGGATTCAAGACAA
GTGTATGATCTAAGAATTACCTCTAACTTGGAAAAAGGGAGTGGCAGTCG
GAGGTGGGTGGAGGAACAGCCGCAGCAGGCGAAGAAGGAGGAGCAAGAGG
AGCAGGTGCGGAGGGGGCAGCAGCTGCGACTGAATCGGACGGGCTTGAGC
ATCAATGCTCTGAGAGGTATCAAGGCGTCTTGGATTTCCTTGCCGGACGA
GCGCGGCACTACTGGTGCTTCTCCAGATTCCCCAGCTGCTGCTGCTGGTA
CTTCGGGAGGGTCGCCCGAGACGATGAAAAGAGTGCTGAGATTGTTCGAT
CCCGATCAGAACCTGTGGCGCTTTACCTATCCCTCCCTTTGA

Synonyms

Publications