NO28G00910.1, NO28G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00910.1
Unique NameNO28G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr28:300538..301335 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:300538..301335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00910.1 vs.
Match: XP_005854666.1 (atp binding protein [Nannochloropsis gaditana CCMP526]; EKU21693.1 atp binding protein [Nannochloropsis gaditana CCMP526]; EWM20903.1 hypothetical protein Naga_100156g11 [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 7.000e-86
Identity = 158/231 (68.40%), Postives = 181/231 (78.35%), Query Frame = 0 
Query:   21 QKQQVLLSFSGGKDSSMALHVLLQDPSYDVVGLLISVRQDTDRVSVHEVRRELLDAQVAALPGNLAVFEVALPPTSTNAEYEGALFAALDAARCRFPQLAILAFGDLFLQDVRDYRVGMLARWSGDDGRPLMPLFPIWGRDTTALAQDVIKLGFRSHLVCVDTTQLGARFSGRQFDAALLDELPESVDPCGENGEFHTFVSDGPVFSKPVPVCGGEVALQGPGNRFAFCDL 252
            Q  QVLLSFSGGKDSSMALHVL  DP++ VVG+++ V +D DRVSVHEVRRELLDAQVAALP +L VF V LP  STN +YEGA+F     AR  FP L  +AFGD+FL DVRDYR+G+LARWSG  G PL+PLFP+WGRDTT LA+D + LGFR+HLVCVDTTQL A + GRQ+DAALLD+LP  VD CGE GEFHTFVS GPVFS  VPV  G V  +G   RFA+CDL
Sbjct:   19 QPSQVLLSFSGGKDSSMALHVLRNDPNFHVVGIMVQVEKDNDRVSVHEVRRELLDAQVAALPSDLTVFHVCLPVMSTNCQYEGAIFDCFAEARQCFPLLKYVAFGDIFLADVRDYRMGVLARWSGHGGCPLLPLFPLWGRDTTRLARDFLALGFRAHLVCVDTTQLDATYVGRQYDAALLDDLPAHVDLCGEKGEFHTFVSAGPVFSSTVPVQVGHVESRGTAGRFAYCDL 249
The following BLAST results are available for this feature:
BLAST of NO28G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854666.17.000e-8668.40atp binding protein [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00910NO28G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00910.1NO28G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00910.1.cds1NO28G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00910.1 ID=NO28G00910.1|Name=NO28G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGACTGAGGCACCATCAACATCAACACCAGCAATTCAAGCACCAACCGC
AGACCCAGCACAAAAACAACAAGTCCTACTCTCGTTTAGTGGCGGCAAGG
ATTCCTCCATGGCCCTGCACGTCCTACTCCAAGATCCCAGCTACGACGTT
GTTGGTTTGCTGATCAGCGTACGGCAAGACACGGACCGTGTGAGCGTCCA
TGAGGTACGGCGGGAGCTTTTGGATGCGCAAGTGGCCGCTCTCCCGGGCA
ACTTGGCGGTGTTTGAAGTTGCGTTGCCACCCACCAGCACCAATGCGGAG
TACGAAGGCGCTTTATTTGCTGCCCTGGATGCAGCGCGATGTCGTTTTCC
CCAGCTAGCCATCTTGGCGTTTGGCGACCTATTTTTGCAGGACGTGCGCG
ATTATCGCGTAGGCATGTTGGCTAGATGGTCCGGCGACGACGGTCGTCCC
CTCATGCCCCTCTTCCCCATATGGGGCAGGGATACGACAGCGCTGGCACA
AGACGTTATCAAGCTGGGCTTTCGGAGTCATTTGGTGTGTGTTGATACCA
CGCAGTTGGGTGCACGTTTTTCGGGAAGACAGTTTGACGCGGCATTACTA
GATGAGCTGCCTGAGAGCGTAGACCCGTGTGGGGAGAACGGGGAGTTCCA
CACCTTTGTGAGTGATGGTCCTGTTTTTAGTAAGCCCGTACCGGTGTGTG
GAGGAGAGGTGGCGCTGCAGGGGCCCGGGAATCGTTTTGCCTTTTGCGAT
TTGCGGCTGGGAATTGGGGAGATGGCGGGCGAGGTAAGAAGGGAATGA
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protein sequence of NO28G00910.1

>NO28G00910.1-protein ID=NO28G00910.1-protein|Name=NO28G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTEAPSTSTPAIQAPTADPAQKQQVLLSFSGGKDSSMALHVLLQDPSYDV
VGLLISVRQDTDRVSVHEVRRELLDAQVAALPGNLAVFEVALPPTSTNAE
YEGALFAALDAARCRFPQLAILAFGDLFLQDVRDYRVGMLARWSGDDGRP
LMPLFPIWGRDTTALAQDVIKLGFRSHLVCVDTTQLGARFSGRQFDAALL
DELPESVDPCGENGEFHTFVSDGPVFSKPVPVCGGEVALQGPGNRFAFCD
LRLGIGEMAGEVRRE*
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mRNA from alignment at chr28:300538..301335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00910.1 ID=NO28G00910.1|Name=NO28G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at chr28:300538..301335+ (Nannochloropsis oceanica)
ATGACTGAGGCACCATCAACATCAACACCAGCAATTCAAGCACCAACCGC
AGACCCAGCACAAAAACAACAAGTCCTACTCTCGTTTAGTGGCGGCAAGG
ATTCCTCCATGGCCCTGCACGTCCTACTCCAAGATCCCAGCTACGACGTT
GTTGGTTTGCTGATCAGCGTACGGCAAGACACGGACCGTGTGAGCGTCCA
TGAGGTACGGCGGGAGCTTTTGGATGCGCAAGTGGCCGCTCTCCCGGGCA
ACTTGGCGGTGTTTGAAGTTGCGTTGCCACCCACCAGCACCAATGCGGAG
TACGAAGGCGCTTTATTTGCTGCCCTGGATGCAGCGCGATGTCGTTTTCC
CCAGCTAGCCATCTTGGCGTTTGGCGACCTATTTTTGCAGGACGTGCGCG
ATTATCGCGTAGGCATGTTGGCTAGATGGTCCGGCGACGACGGTCGTCCC
CTCATGCCCCTCTTCCCCATATGGGGCAGGGATACGACAGCGCTGGCACA
AGACGTTATCAAGCTGGGCTTTCGGAGTCATTTGGTGTGTGTTGATACCA
CGCAGTTGGGTGCACGTTTTTCGGGAAGACAGTTTGACGCGGCATTACTA
GATGAGCTGCCTGAGAGCGTAGACCCGTGTGGGGAGAACGGGGAGTTCCA
CACCTTTGTGAGTGATGGTCCTGTTTTTAGTAAGCCCGTACCGGTGTGTG
GAGGAGAGGTGGCGCTGCAGGGGCCCGGGAATCGTTTTGCCTTTTGCGAT
TTGCGGCTGGGAATTGGGGAGATGGCGGGCGAGGTAAGAAGGGAATGA
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Coding sequence (CDS) from alignment at chr28:300538..301335+

>NO28G00910.1 ID=NO28G00910.1|Name=NO28G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr28:300538..301335+ (Nannochloropsis oceanica)
ATGACTGAGGCACCATCAACATCAACACCAGCAATTCAAGCACCAACCGC
AGACCCAGCACAAAAACAACAAGTCCTACTCTCGTTTAGTGGCGGCAAGG
ATTCCTCCATGGCCCTGCACGTCCTACTCCAAGATCCCAGCTACGACGTT
GTTGGTTTGCTGATCAGCGTACGGCAAGACACGGACCGTGTGAGCGTCCA
TGAGGTACGGCGGGAGCTTTTGGATGCGCAAGTGGCCGCTCTCCCGGGCA
ACTTGGCGGTGTTTGAAGTTGCGTTGCCACCCACCAGCACCAATGCGGAG
TACGAAGGCGCTTTATTTGCTGCCCTGGATGCAGCGCGATGTCGTTTTCC
CCAGCTAGCCATCTTGGCGTTTGGCGACCTATTTTTGCAGGACGTGCGCG
ATTATCGCGTAGGCATGTTGGCTAGATGGTCCGGCGACGACGGTCGTCCC
CTCATGCCCCTCTTCCCCATATGGGGCAGGGATACGACAGCGCTGGCACA
AGACGTTATCAAGCTGGGCTTTCGGAGTCATTTGGTGTGTGTTGATACCA
CGCAGTTGGGTGCACGTTTTTCGGGAAGACAGTTTGACGCGGCATTACTA
GATGAGCTGCCTGAGAGCGTAGACCCGTGTGGGGAGAACGGGGAGTTCCA
CACCTTTGTGAGTGATGGTCCTGTTTTTAGTAAGCCCGTACCGGTGTGTG
GAGGAGAGGTGGCGCTGCAGGGGCCCGGGAATCGTTTTGCCTTTTGCGAT
TTGCGGCTGGGAATTGGGGAGATGGCGGGCGAGGTAAGAAGGGAATGA
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Synonyms
Publications