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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:276160..279012 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00830.1 vs.
Match: XP_005644176.1 (SPRY-domain-containing protein [Coccomyxa subellipsoidea C-169]; EIE19632.1 SPRY-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 122.1 bits (305), Expect = 9.400e-24 Identity = 68/165 (41.21%), Postives = 89/165 (53.94%), Query Frame = 0
Query: 112 LSSDRRTVRYVGKANHPQDVGTVKGDRPLPRDRACFYFEIEVLSTCEKRPTAAMTVGLAAKGFPMHRQPGTWPHSYGYRGSDGYFFAALPPECTSSGSGGGRGTNNGSSSSSSSGNSSTRKKDCGPAFGEGDVIGCGVDFATQEVFYTKNGKYLGVAFRDIFRLP 277
+ D+ TVRY G+ H DVG ++G+RP+PR R +Y+E+ VL EK + VG A K F M +QPG PHSYGY G DG F +G G ++ GP F GDVIG G+ QE+F+TKNGK+LGVAFR + +LP
Sbjct: 40 VEKDKLTVRYTGQGAHNNDVGAIQGNRPVPRKRRVYYYEVTVLDAGEK---GLIGVGFADKNFKMGKQPGWEPHSYGYHGDDGKKFH-------QNGQG----------------------EEYGPQFTLGDVIGAGIHIQRQEIFFTKNGKHLGVAFRGLPQLP 172
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00830.1 ID=NO28G00830.1|Name=NO28G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp ATGGACCATGAGTCCAGGAGCTGTCCTCCACCACCGCTGCTCACAGGGCT AGAGCAGGTCCTCGCTTTGGAGCATAGCAGCCCCGGCGAGGTAATCATCG CGAAGGAGTATAATGGGGAGGAGTACTTGTCCGAAGAGGAGATGGACGAA GCTGCCACGGGGTGGCATCTTTCTTACCATCACGGCGACGTCTTGCCCTC AACCTGGGACCTCTCCGACAGTTGGGGCACCATCAATGACGAAAGAAGTG CGCTCGTGCAGGGCATGGGTAGCAGCTGCTCCAGTGGCCACTATAAATGG CGGCCGGAGGCATGTGGTAGTTACCATGCCGCCCTGTCTAGTGATCGCCG CACGGTGCGCTACGTGGGTAAGGCAAATCACCCCCAGGACGTGGGAACGG TCAAGGGCGACCGCCCTTTGCCTCGAGACCGTGCTTGTTTCTACTTTGAG ATTGAGGTTTTGTCCACCTGTGAAAAACGTCCGACGGCTGCCATGACTGT GGGGCTGGCTGCTAAGGGCTTTCCCATGCACCGGCAACCAGGCACCTGGC CGCATTCCTACGGCTACCGTGGCTCAGACGGCTATTTTTTTGCAGCCCTG CCGCCTGAATGTACGAGTAGCGGTAGCGGTGGAGGAAGGGGGACCAATAA TGGCAGTAGTAGTAGTAGTAGTAGCGGTAATTCGTCGACGCGAAAGAAAG ACTGCGGCCCGGCCTTTGGCGAGGGTGACGTGATAGGCTGCGGCGTGGAT TTTGCCACTCAGGAGGTTTTCTACACCAAGAATGGTAAGTACTTAGGCGT CGCCTTTCGAGATATTTTTCGGCTCCCGGGGCACCACCAGCAGCAGTACT GCCATTCAGCGACGCGCCAAGGGGTGGTCCGGAGGTACGTCAGGCCGTAC CTGCCAAATGCCTTTCCAACTGCGATGATGCCTAGACAAGCCTCAAGCAA CACTGCTGCTACTGAGCCGGTCCCTTCCTCCCCGTCATTCTCCTCTTCCG GCATCGCCACTGCACGCGCACCCTCCATCCTCCTAAGCCGCGGTCGTTTC CTACCAGACTCGGCGGCGGCGCCTGTAGGAGGAAGAGATGAAAGTGGTGA GAGGGCCGAGGAGGGCCGGGGGGCAAGTCGTACCAGCACAACCATATCGC GTGGATTAAGAGCTGCTATCCCTTCAGGAGTGGTCGCCTCGCGAGCTTCC TGGTTGGCTGATGCGGGGGAGGAGGAAGGAGAAGAGGACGAGGACGAGGA CGTGGAAGAGGAGGACGAAGAGGGAGCGGGTAGGCGAGATTATCGTGAGC AAAGTCGGCGCCGGAGCGCGAGAGCTGGCCAAGATGGCGGAGGGGGAGGC GGACATAGCAGCAGGGAGAGACGAGATGCTTCCTTTTCGGAAGGGTCGTC GTCGTCGTCCACTGCCAGCGCCGGCAACAGCACTGACGTGACCATCCCTT ACAACACCAGTCGCCCAGAGCGCCAACGGCATCAGCACCAGCACCAGCAC CAGCACCAGCACGTCGCGAGCTCTCCACGGGTTCTGGCTGTCGCTAGATC TCCCGAGGTCGCGTGGGACTTGTTTCCTGTCCTGAGCTTGCACGGCGTCG GGGAATCGGCGCGCGTCAATTTCGGTCAGGAGCCTTTCTGCTTCGATCTA CAGGCGAAGCGCGTGGCAGACGAGGCGGAGAGGGAGCGGCGACTTGCAGG GGAGGGAATGGAGCGGGGAGTAGAGGAAAAGGTGGAAGTGGACGCGCTCA TCAAGGACTATTTGCTTGTAGCGGGCTATCGGGAGACCTTGCGTTGCTTC GATGATGTCATTAGCTCTAGCGCCCCTGCCATAACGAATCCTGCGGCGAC GATTGCTGTGAAACAGGAGAAAACGCCCTATGGTGGGGGCTCGTCGAGCT CGACGATGGACATCGTGGGAGCGTCGGAAGAGCAGCAGCCAGGCCCCAAC AGTAGCTGCGGCCGCGAGCACGAGGAGAATGCAAGCGGCGAATTGAGTAG AGACCGACCAAGTACGTTTGCTCAAAGCTTGCGGGAGCGGACGGTGCACT TGAGCTGCAGTCTGACGTTTCGGCATGAGTTGCGGCAGATGCTCCTTTCC GGCGGAGGAGTGGCCGTGATCACAGAGCACTTGATCAAGAATTATCCACG ATTGTGGCGCCAACGCCCTATCATCCGCTTTGAATTGCACAGCCTTGCTT ACTTGGATTTGTTGCGGCAGGGTGAGGGTGCGCTGCGAGAGGCGCTGGTC TATGCGCAACAGAAGCTGTTGCCCTTTACCTTAGGGGATACCCACCAGTT GGAAACGATAGGGGGCCTGGAAGGAGACGTCGACCAAGACAGTAGCATGA ACATGGTGATGGGTGGAAAGGATAGCAATGACGACATTCCGAGTCCGAGC AAGGGCCGTAAGATGAATTTCCGGCGACGGCGTTTCCTCAGGAAGCGTGA GGTTGACCCAGGGGGGCCAGCCGAGCGACGGCCCCGGAGCCCGGAGCCTC TTCGCTCCTCATCGTTTGTCTCGCCTCGCCTCGACTTTGCGATGCGACTT CGGGACCTAATAGGGCTGGTGGCCTACTATCCCAACCTCTCCGGCTCCCC GGCGGCCTACCTCTTGTCCAAGGGTCATCGCGAGGACGTAGCGGACAAGT TGAACGCGGCCATTCTGGAGGAGGTGCACGAAAACGGCGAAGGAGAGAAG GAATCCGACAAGGATGATCGAGATCGCCCCCTTCTAGAAAGAGCCTTGGT TGGCCTGGCGACCATGCACGAGACATTGCGGGAGGTTAAGAGCGGAGGGC GGGGCGAAAACTTCCGCCTCCCGGCGCTCTCTCAAGCGCACAAGGCATTC TAG back to topprotein sequence of NO28G00830.1 >NO28G00830.1-protein ID=NO28G00830.1-protein|Name=NO28G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=951bp MDHESRSCPPPPLLTGLEQVLALEHSSPGEVIIAKEYNGEEYLSEEEMDE AATGWHLSYHHGDVLPSTWDLSDSWGTINDERSALVQGMGSSCSSGHYKW RPEACGSYHAALSSDRRTVRYVGKANHPQDVGTVKGDRPLPRDRACFYFE IEVLSTCEKRPTAAMTVGLAAKGFPMHRQPGTWPHSYGYRGSDGYFFAAL PPECTSSGSGGGRGTNNGSSSSSSSGNSSTRKKDCGPAFGEGDVIGCGVD FATQEVFYTKNGKYLGVAFRDIFRLPGHHQQQYCHSATRQGVVRRYVRPY LPNAFPTAMMPRQASSNTAATEPVPSSPSFSSSGIATARAPSILLSRGRF LPDSAAAPVGGRDESGERAEEGRGASRTSTTISRGLRAAIPSGVVASRAS WLADAGEEEGEEDEDEDVEEEDEEGAGRRDYREQSRRRSARAGQDGGGGG GHSSRERRDASFSEGSSSSSTASAGNSTDVTIPYNTSRPERQRHQHQHQH QHQHVASSPRVLAVARSPEVAWDLFPVLSLHGVGESARVNFGQEPFCFDL QAKRVADEAERERRLAGEGMERGVEEKVEVDALIKDYLLVAGYRETLRCF DDVISSSAPAITNPAATIAVKQEKTPYGGGSSSSTMDIVGASEEQQPGPN SSCGREHEENASGELSRDRPSTFAQSLRERTVHLSCSLTFRHELRQMLLS GGGVAVITEHLIKNYPRLWRQRPIIRFELHSLAYLDLLRQGEGALREALV YAQQKLLPFTLGDTHQLETIGGLEGDVDQDSSMNMVMGGKDSNDDIPSPS KGRKMNFRRRRFLRKREVDPGGPAERRPRSPEPLRSSSFVSPRLDFAMRL RDLIGLVAYYPNLSGSPAAYLLSKGHREDVADKLNAAILEEVHENGEGEK ESDKDDRDRPLLERALVGLATMHETLREVKSGGRGENFRLPALSQAHKAF * back to topmRNA from alignment at chr28:276160..279012- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00830.1 ID=NO28G00830.1|Name=NO28G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp|location=Sequence derived from alignment at chr28:276160..279012- (Nannochloropsis oceanica) ATGGACCATGAGTCCAGGAGCTGTCCTCCACCACCGCTGCTCACAGGGCT
AGAGCAGGTCCTCGCTTTGGAGCATAGCAGCCCCGGCGAGGTAATCATCG
CGAAGGAGTATAATGGGGAGGAGTACTTGTCCGAAGAGGAGATGGACGAA
GCTGCCACGGGGTGGCATCTTTCTTACCATCACGGCGACGTCTTGCCCTC
AACCTGGGACCTCTCCGACAGTTGGGGCACCATCAATGACGAAAGAAGTG
CGCTCGTGCAGGGCATGGGTAGCAGCTGCTCCAGTGGCCACTATAAATGG
CGGCCGGAGGCATGTGGTAGTTACCATGCCGCCCTGTCTAGTGATCGCCG
CACGGTGCGCTACGTGGGTAAGGCAAATCACCCCCAGGACGTGGGAACGG
TCAAGGGCGACCGCCCTTTGCCTCGAGACCGTGCTTGTTTCTACTTTGAG
ATTGAGGTTTTGTCCACCTGTGAAAAACGTCCGACGGCTGCCATGACTGT
GGGGCTGGCTGCTAAGGGCTTTCCCATGCACCGGCAACCAGGCACCTGGC
CGCATTCCTACGGCTACCGTGGCTCAGACGGCTATTTTTTTGCAGCCCTG
CCGCCTGAATGTACGAGTAGCGGTAGCGGTGGAGGAAGGGGGACCAATAA
TGGCAGTAGTAGTAGTAGTAGTAGCGGTAATTCGTCGACGCGAAAGAAAG
ACTGCGGCCCGGCCTTTGGCGAGGGTGACGTGATAGGCTGCGGCGTGGAT
TTTGCCACTCAGGAGGTTTTCTACACCAAGAATGGTAAGTACTTAGGCGT
CGCCTTTCGAGATATTTTTCGGCTCCCGGGGCACCACCAGCAGCAGTACT
GCCATTCAGCGACGCGCCAAGGGGTGGTCCGGAGGTACGTCAGGCCGTAC
CTGCCAAATGCCTTTCCAACTGCGATGATGCCTAGACAAGCCTCAAGCAA
CACTGCTGCTACTGAGCCGGTCCCTTCCTCCCCGTCATTCTCCTCTTCCG
GCATCGCCACTGCACGCGCACCCTCCATCCTCCTAAGCCGCGGTCGTTTC
CTACCAGACTCGGCGGCGGCGCCTGTAGGAGGAAGAGATGAAAGTGGTGA
GAGGGCCGAGGAGGGCCGGGGGGCAAGTCGTACCAGCACAACCATATCGC
GTGGATTAAGAGCTGCTATCCCTTCAGGAGTGGTCGCCTCGCGAGCTTCC
TGGTTGGCTGATGCGGGGGAGGAGGAAGGAGAAGAGGACGAGGACGAGGA
CGTGGAAGAGGAGGACGAAGAGGGAGCGGGTAGGCGAGATTATCGTGAGC
AAAGTCGGCGCCGGAGCGCGAGAGCTGGCCAAGATGGCGGAGGGGGAGGC
GGACATAGCAGCAGGGAGAGACGAGATGCTTCCTTTTCGGAAGGGTCGTC
GTCGTCGTCCACTGCCAGCGCCGGCAACAGCACTGACGTGACCATCCCTT
ACAACACCAGTCGCCCAGAGCGCCAACGGCATCAGCACCAGCACCAGCAC
CAGCACCAGCACGTCGCGAGCTCTCCACGGGTTCTGGCTGTCGCTAGATC
TCCCGAGGTCGCGTGGGACTTGTTTCCTGTCCTGAGCTTGCACGGCGTCG
GGGAATCGGCGCGCGTCAATTTCGGTCAGGAGCCTTTCTGCTTCGATCTA
CAGGCGAAGCGCGTGGCAGACGAGGCGGAGAGGGAGCGGCGACTTGCAGG
GGAGGGAATGGAGCGGGGAGTAGAGGAAAAGGTGGAAGTGGACGCGCTCA
TCAAGGACTATTTGCTTGTAGCGGGCTATCGGGAGACCTTGCGTTGCTTC
GATGATGTCATTAGCTCTAGCGCCCCTGCCATAACGAATCCTGCGGCGAC
GATTGCTGTGAAACAGGAGAAAACGCCCTATGGTGGGGGCTCGTCGAGCT
CGACGATGGACATCGTGGGAGCGTCGGAAGAGCAGCAGCCAGGCCCCAAC
AGTAGCTGCGGCCGCGAGCACGAGGAGAATGCAAGCGGCGAATTGAGTAG
AGACCGACCAAGTACGTTTGCTCAAAGCTTGCGGGAGCGGACGGTGCACT
TGAGCTGCAGTCTGACGTTTCGGCATGAGTTGCGGCAGATGCTCCTTTCC
GGCGGAGGAGTGGCCGTGATCACAGAGCACTTGATCAAGAATTATCCACG
ATTGTGGCGCCAACGCCCTATCATCCGCTTTGAATTGCACAGCCTTGCTT
ACTTGGATTTGTTGCGGCAGGGTGAGGGTGCGCTGCGAGAGGCGCTGGTC
TATGCGCAACAGAAGCTGTTGCCCTTTACCTTAGGGGATACCCACCAGTT
GGAAACGATAGGGGGCCTGGAAGGAGACGTCGACCAAGACAGTAGCATGA
ACATGGTGATGGGTGGAAAGGATAGCAATGACGACATTCCGAGTCCGAGC
AAGGGCCGTAAGATGAATTTCCGGCGACGGCGTTTCCTCAGGAAGCGTGA
GGTTGACCCAGGGGGGCCAGCCGAGCGACGGCCCCGGAGCCCGGAGCCTC
TTCGCTCCTCATCGTTTGTCTCGCCTCGCCTCGACTTTGCGATGCGACTT
CGGGACCTAATAGGGCTGGTGGCCTACTATCCCAACCTCTCCGGCTCCCC
GGCGGCCTACCTCTTGTCCAAGGGTCATCGCGAGGACGTAGCGGACAAGT
TGAACGCGGCCATTCTGGAGGAGGTGCACGAAAACGGCGAAGGAGAGAAG
GAATCCGACAAGGATGATCGAGATCGCCCCCTTCTAGAAAGAGCCTTGGT
TGGCCTGGCGACCATGCACGAGACATTGCGGGAGGTTAAGAGCGGAGGGC
GGGGCGAAAACTTCCGCCTCCCGGCGCTCTCTCAAGCGCACAAGGCATTC
TAG back to topCoding sequence (CDS) from alignment at chr28:276160..279012- >NO28G00830.1 ID=NO28G00830.1|Name=NO28G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=2853bp|location=Sequence derived from alignment at chr28:276160..279012- (Nannochloropsis oceanica) ATGGACCATGAGTCCAGGAGCTGTCCTCCACCACCGCTGCTCACAGGGCT AGAGCAGGTCCTCGCTTTGGAGCATAGCAGCCCCGGCGAGGTAATCATCG CGAAGGAGTATAATGGGGAGGAGTACTTGTCCGAAGAGGAGATGGACGAA GCTGCCACGGGGTGGCATCTTTCTTACCATCACGGCGACGTCTTGCCCTC AACCTGGGACCTCTCCGACAGTTGGGGCACCATCAATGACGAAAGAAGTG CGCTCGTGCAGGGCATGGGTAGCAGCTGCTCCAGTGGCCACTATAAATGG CGGCCGGAGGCATGTGGTAGTTACCATGCCGCCCTGTCTAGTGATCGCCG CACGGTGCGCTACGTGGGTAAGGCAAATCACCCCCAGGACGTGGGAACGG TCAAGGGCGACCGCCCTTTGCCTCGAGACCGTGCTTGTTTCTACTTTGAG ATTGAGGTTTTGTCCACCTGTGAAAAACGTCCGACGGCTGCCATGACTGT GGGGCTGGCTGCTAAGGGCTTTCCCATGCACCGGCAACCAGGCACCTGGC CGCATTCCTACGGCTACCGTGGCTCAGACGGCTATTTTTTTGCAGCCCTG CCGCCTGAATGTACGAGTAGCGGTAGCGGTGGAGGAAGGGGGACCAATAA TGGCAGTAGTAGTAGTAGTAGTAGCGGTAATTCGTCGACGCGAAAGAAAG ACTGCGGCCCGGCCTTTGGCGAGGGTGACGTGATAGGCTGCGGCGTGGAT TTTGCCACTCAGGAGGTTTTCTACACCAAGAATGGTAAGTACTTAGGCGT CGCCTTTCGAGATATTTTTCGGCTCCCGGGGCACCACCAGCAGCAGTACT GCCATTCAGCGACGCGCCAAGGGGTGGTCCGGAGGTACGTCAGGCCGTAC CTGCCAAATGCCTTTCCAACTGCGATGATGCCTAGACAAGCCTCAAGCAA CACTGCTGCTACTGAGCCGGTCCCTTCCTCCCCGTCATTCTCCTCTTCCG GCATCGCCACTGCACGCGCACCCTCCATCCTCCTAAGCCGCGGTCGTTTC CTACCAGACTCGGCGGCGGCGCCTGTAGGAGGAAGAGATGAAAGTGGTGA GAGGGCCGAGGAGGGCCGGGGGGCAAGTCGTACCAGCACAACCATATCGC GTGGATTAAGAGCTGCTATCCCTTCAGGAGTGGTCGCCTCGCGAGCTTCC TGGTTGGCTGATGCGGGGGAGGAGGAAGGAGAAGAGGACGAGGACGAGGA CGTGGAAGAGGAGGACGAAGAGGGAGCGGGTAGGCGAGATTATCGTGAGC AAAGTCGGCGCCGGAGCGCGAGAGCTGGCCAAGATGGCGGAGGGGGAGGC GGACATAGCAGCAGGGAGAGACGAGATGCTTCCTTTTCGGAAGGGTCGTC GTCGTCGTCCACTGCCAGCGCCGGCAACAGCACTGACGTGACCATCCCTT ACAACACCAGTCGCCCAGAGCGCCAACGGCATCAGCACCAGCACCAGCAC CAGCACCAGCACGTCGCGAGCTCTCCACGGGTTCTGGCTGTCGCTAGATC TCCCGAGGTCGCGTGGGACTTGTTTCCTGTCCTGAGCTTGCACGGCGTCG GGGAATCGGCGCGCGTCAATTTCGGTCAGGAGCCTTTCTGCTTCGATCTA CAGGCGAAGCGCGTGGCAGACGAGGCGGAGAGGGAGCGGCGACTTGCAGG GGAGGGAATGGAGCGGGGAGTAGAGGAAAAGGTGGAAGTGGACGCGCTCA TCAAGGACTATTTGCTTGTAGCGGGCTATCGGGAGACCTTGCGTTGCTTC GATGATGTCATTAGCTCTAGCGCCCCTGCCATAACGAATCCTGCGGCGAC GATTGCTGTGAAACAGGAGAAAACGCCCTATGGTGGGGGCTCGTCGAGCT CGACGATGGACATCGTGGGAGCGTCGGAAGAGCAGCAGCCAGGCCCCAAC AGTAGCTGCGGCCGCGAGCACGAGGAGAATGCAAGCGGCGAATTGAGTAG AGACCGACCAAGTACGTTTGCTCAAAGCTTGCGGGAGCGGACGGTGCACT TGAGCTGCAGTCTGACGTTTCGGCATGAGTTGCGGCAGATGCTCCTTTCC GGCGGAGGAGTGGCCGTGATCACAGAGCACTTGATCAAGAATTATCCACG ATTGTGGCGCCAACGCCCTATCATCCGCTTTGAATTGCACAGCCTTGCTT ACTTGGATTTGTTGCGGCAGGGTGAGGGTGCGCTGCGAGAGGCGCTGGTC TATGCGCAACAGAAGCTGTTGCCCTTTACCTTAGGGGATACCCACCAGTT GGAAACGATAGGGGGCCTGGAAGGAGACGTCGACCAAGACAGTAGCATGA ACATGGTGATGGGTGGAAAGGATAGCAATGACGACATTCCGAGTCCGAGC AAGGGCCGTAAGATGAATTTCCGGCGACGGCGTTTCCTCAGGAAGCGTGA GGTTGACCCAGGGGGGCCAGCCGAGCGACGGCCCCGGAGCCCGGAGCCTC TTCGCTCCTCATCGTTTGTCTCGCCTCGCCTCGACTTTGCGATGCGACTT CGGGACCTAATAGGGCTGGTGGCCTACTATCCCAACCTCTCCGGCTCCCC GGCGGCCTACCTCTTGTCCAAGGGTCATCGCGAGGACGTAGCGGACAAGT TGAACGCGGCCATTCTGGAGGAGGTGCACGAAAACGGCGAAGGAGAGAAG GAATCCGACAAGGATGATCGAGATCGCCCCCTTCTAGAAAGAGCCTTGGT TGGCCTGGCGACCATGCACGAGACATTGCGGGAGGTTAAGAGCGGAGGGC GGGGCGAAAACTTCCGCCTCCCGGCGCTCTCTCAAGCGCACAAGGCATTC TAG back to top
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