NO28G00810.1, NO28G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00810.1
Unique NameNO28G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1609
Alignment locationchr28:267078..268985 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:267078..268985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00810.1 vs.
Match: EWM20925.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 548.9 bits (1413), Expect = 1.200e-152
Identity = 246/326 (75.46%), Postives = 280/326 (85.89%), Query Frame = 0 
Query:   20 GPLVWTSECHSILVNGLKVAIKGINWFGFETTDGCVHGLWDGLSKSLSDYLDLLHTHGFNALRLPFSVKLALALDSTYPNSSFVAADSSLAGLSCGQIMDLLIVECGKRGILVMLDQHRLDPERGISDLWYDEGYEEPVILKSWDVMVGRYKKYWNVFALDLKNEPHGSCTWGSGEALTDWKAASERVMKFIAHAHPDFLGLFFVSGIWGGGGHWWGGNFRGVRMKPVDLGEEGMNRRVVYTPHVYGPDVYPQAYFSSWSFPNNLPAIWEAHWGFLRGMEGRGGGEGGRAVVVSEWGGFCKGKDAKWQEKVARYLWERGMADNFYW 346
            GPL WTSE   +LVN  +  IKGINWFGFET D CVHGLW GLSK+L+DYLDLL  HGFNA+RLPFSVKLALALD+TYP   FV AD+SL+ L+ GQIMD L+ E GKRG++VMLDQHRLDP+RGISDLWYDEGYEEPVIL+SWD+M+ R+K +WNVFALDLKNEPHG C+WGSGEALTDWKAASER+++ IA AHPDF GLFFVSGIWGGGGHWWGGNFR VR  PVD+G  G+NRRVVYTPHVYGPDV+PQ+YFSSWSFP+NLPA+W+ HWGFL G+          AVVVSEWGGFC+GKDAKWQE++ARYL E+GMADNFYW
Sbjct:   14 GPLTWTSERRMVLVNNRQFRIKGINWFGFETPDKCVHGLWGGLSKTLTDYLDLLAFHGFNAIRLPFSVKLALALDTTYPEPGFVQADASLSSLTSGQIMDKLVEEAGKRGMMVMLDQHRLDPDRGISDLWYDEGYEEPVILRSWDIMLARFKTHWNVFALDLKNEPHGPCSWGSGEALTDWKAASERIIRHIAAAHPDFRGLFFVSGIWGGGGHWWGGNFRRVREHPVDVGSTGLNRRVVYTPHVYGPDVFPQSYFSSWSFPDNLPAVWDLHWGFLSGVL-------ETAVVVSEWGGFCRGKDAKWQERIARYLREKGMADNFYW 332
The following BLAST results are available for this feature:
BLAST of NO28G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20925.11.200e-15275.46cellulase 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00810NO28G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00810.1NO28G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00810.1.cds1NO28G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00810.1.cds2NO28G00810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00810.1 ID=NO28G00810.1|Name=NO28G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp
ACAATGCAGACAGTCACTCAGGGAACCAAACATCATCAATAATGGCCCAC
CCGCAAGAAGACATCGGTGCCACAAATCCGTCGACGAAGCGGGTCATTGG
GCCTCTGGTCTGGACTTCGGAGTGCCACAGCATTCTGGTGAACGGCCTGA
AGGTGGCAATTAAAGGGATCAATTGGTTTGGCTTTGAAACAACGGACGGC
TGCGTCCATGGGCTCTGGGACGGCCTTTCCAAATCTCTAAGTGACTACCT
GGATCTCTTACACACCCACGGGTTTAATGCGCTGCGACTCCCCTTCTCCG
TCAAGCTCGCCCTTGCCCTGGACAGCACGTACCCCAACTCTAGTTTCGTT
GCCGCAGACTCCTCACTTGCCGGCTTGAGCTGTGGGCAGATCATGGATCT
ACTGATTGTAGAATGTGGGAAGAGAGGGATTCTGGTTATGCTGGACCAGC
ACCGATTAGACCCCGAAAGAGGGATCTCGGATTTGTGGTATGATGAGGGA
TATGAGGAGCCGGTCATCTTGAAGAGTTGGGATGTAATGGTGGGGAGGTA
TAAGAAATATTGGAACGTTTTCGCGCTTGATCTGAAAAATGAGCCGCACG
GCTCCTGTACGTGGGGGAGTGGGGAGGCCCTCACTGATTGGAAAGCGGCG
AGCGAACGAGTGATGAAGTTTATCGCTCATGCCCACCCTGATTTTTTGGG
GCTGTTCTTTGTGAGCGGGATATGGGGAGGGGGGGGGCATTGGTGGGGAG
GAAACTTCAGAGGGGTGAGGATGAAGCCAGTAGACCTTGGCGAGGAGGGG
ATGAATCGACGGGTTGTCTACACGCCCCATGTTTACGGCCCGGACGTGTA
CCCTCAGGCATATTTCTCGAGTTGGTCGTTTCCGAATAATTTGCCCGCAA
TTTGGGAGGCGCATTGGGGATTTTTGCGGGGGATGGAAGGGAGGGGCGGA
GGGGAGGGAGGGAGGGCGGTGGTGGTCAGTGAGTGGGGAGGTTTCTGTAA
GGGGAAGGATGCCAAGTGGCAGGAGAAGGTGGCGAGATATCTGTGGGAAA
GAGGGATGGCGGATAACTTTTACTGGTGGTGCGTAGGTAGGGAGAAGGAG
CGGGAGGGGCAAGGTGGCTTTGCGTGCTATATTTGCTTTGACTATCTTTG
TCTCATCCTGCAATTAAGCGCGTGATGGTGCTCGTCTGCGAGCATGTCAA
CCTCACCTTTACACTCTCTATACCACAAATACGTGCACAGTCTGAACCCT
AACAGCGGTGACACCGGCGGGATCCTCCTGGACGACTGGACTACTCTTCA
TATCGAAAAGCTTCGCATCCTCCACACTCTCCAGCCCGCTCCCACCCTTC
TCCGTGAGTTAGACGTCCTTCCCTCTTCACTTCCTGAAAAAGAGAACAAG
AAGGGAGAGAAGGGGAGGGAGGAGGAGAAGGAGGGGAAGGTAGTGAGGCT
GTATGAGTACCAGCTGGGGGTCGAAACGGCCGCCCTCTCCTCCACGGTAG
CTGCGGTGTCAGCTAAAAAGGTCAAGAGGTGCTTTGGCCTATTTTGAGGA
GGATTGAGGAATTTATGTGCGTGTGTCTCTATGAGGAATTTATGTGCGTG
TGTCTCTAT
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protein sequence of NO28G00810.1

>NO28G00810.1-protein ID=NO28G00810.1-protein|Name=NO28G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MAHPQEDIGATNPSTKRVIGPLVWTSECHSILVNGLKVAIKGINWFGFET
TDGCVHGLWDGLSKSLSDYLDLLHTHGFNALRLPFSVKLALALDSTYPNS
SFVAADSSLAGLSCGQIMDLLIVECGKRGILVMLDQHRLDPERGISDLWY
DEGYEEPVILKSWDVMVGRYKKYWNVFALDLKNEPHGSCTWGSGEALTDW
KAASERVMKFIAHAHPDFLGLFFVSGIWGGGGHWWGGNFRGVRMKPVDLG
EEGMNRRVVYTPHVYGPDVYPQAYFSSWSFPNNLPAIWEAHWGFLRGMEG
RGGGEGGRAVVVSEWGGFCKGKDAKWQEKVARYLWERGMADNFYWWCVGR
EKEREGQGGFACYICFDYLCLILQLSA*
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mRNA from alignment at chr28:267078..268985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00810.1 ID=NO28G00810.1|Name=NO28G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at chr28:267078..268985- (Nannochloropsis oceanica)
ACAATGCAGACAGTCACTCAGGGAACCAAACATCATCAATAATGGCCCAC
CCGCAAGAAGACATCGGTGCCACAAATCCGTCGACGAAGCGGGTCATTGG
GCCTCTGGTCTGGACTTCGGAGTGCCACAGCATTCTGGTGAACGGCCTGA
AGGTGGCAATTAAAGGGATCAATTGGTTTGGCTTTGGTACGTCGATGCGT
ACATGGGAAGGGGGAAGGAGGAGATGTCGTTGTCGTTCTTCCTCTCACCC
TTAGGATGGGGTAAAGCGGGAAGGGGAAGGCTTGTCGCATACGTTTAGGC
AGTATCCGTAGCCATTTAATACCTTAAGGTTGTGCCCGGGAGATCCGTGC
GCAGAGAAGAAAGCGTGTAGCCATGGTTTGTCAAAAGCGCAGCGTTGGGG
CGCTGTCTCTTTTTGCAACTCTCTTCTCCCTTCTCCCTTGCGCCCTTATT
CCCTTTCTGCCACCCATCTTTCCAAACACTCCTAGAAACAACGGACGGCT
GCGTCCATGGGCTCTGGGACGGCCTTTCCAAATCTCTAAGTGACTACCTG
GATCTCTTACACACCCACGGGTTTAATGCGCTGCGACTCCCCTTCTCCGT
CAAGCTCGCCCTTGCCCTGGACAGCACGTACCCCAACTCTAGTTTCGTTG
CCGCAGACTCCTCACTTGCCGGCTTGAGCTGTGGGCAGATCATGGATCTA
CTGATTGTAGAATGTGGGAAGAGAGGGATTCTGGTTATGCTGGACCAGCA
CCGATTAGACCCCGAAAGAGGGATCTCGGATTTGTGGTATGATGAGGGAT
ATGAGGAGCCGGTCATCTTGAAGAGTTGGGATGTAATGGTGGGGAGGTAT
AAGAAATATTGGAACGTTTTCGCGCTTGATCTGAAAAATGAGCCGCACGG
CTCCTGTACGTGGGGGAGTGGGGAGGCCCTCACTGATTGGAAAGCGGCGA
GCGAACGAGTGATGAAGTTTATCGCTCATGCCCACCCTGATTTTTTGGGG
CTGTTCTTTGTGAGCGGGATATGGGGAGGGGGGGGGCATTGGTGGGGAGG
AAACTTCAGAGGGGTGAGGATGAAGCCAGTAGACCTTGGCGAGGAGGGGA
TGAATCGACGGGTTGTCTACACGCCCCATGTTTACGGCCCGGACGTGTAC
CCTCAGGCATATTTCTCGAGTTGGTCGTTTCCGAATAATTTGCCCGCAAT
TTGGGAGGCGCATTGGGGATTTTTGCGGGGGATGGAAGGGAGGGGCGGAG
GGGAGGGAGGGAGGGCGGTGGTGGTCAGTGAGTGGGGAGGTTTCTGTAAG
GGGAAGGATGCCAAGTGGCAGGAGAAGGTGGCGAGATATCTGTGGGAAAG
AGGGATGGCGGATAACTTTTACTGGTGGTGCGTAGGTAGGGAGAAGGAGC
GGGAGGGGCAAGGTGGCTTTGCGTGCTATATTTGCTTTGACTATCTTTGT
CTCATCCTGCAATTAAGCGCGTGATGGTGCTCGTCTGCGAGCATGTCAAC
CTCACCTTTACACTCTCTATACCACAAATACGTGCACAGTCTGAACCCTA
ACAGCGGTGACACCGGCGGGATCCTCCTGGACGACTGGACTACTCTTCAT
ATCGAAAAGCTTCGCATCCTCCACACTCTCCAGCCCGCTCCCACCCTTCT
CCGTGAGTTAGACGTCCTTCCCTCTTCACTTCCTGAAAAAGAGAACAAGA
AGGGAGAGAAGGGGAGGGAGGAGGAGAAGGAGGGGAAGGTAGTGAGGCTG
TATGAGTACCAGCTGGGGGTCGAAACGGCCGCCCTCTCCTCCACGGTAGC
TGCGGTGTCAGCTAAAAAGGTCAAGAGGTGCTTTGGCCTATTTTGAGGAG
GATTGAGGAATTTATGTGCGTGTGTCTCTATGAGGAATTTATGTGCGTGT
GTCTCTAT
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Coding sequence (CDS) from alignment at chr28:267078..268985-

>NO28G00810.1 ID=NO28G00810.1|Name=NO28G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr28:267078..268985- (Nannochloropsis oceanica)
ATGGCCCACCCGCAAGAAGACATCGGTGCCACAAATCCGTCGACGAAGCG
GGTCATTGGGCCTCTGGTCTGGACTTCGGAGTGCCACAGCATTCTGGTGA
ACGGCCTGAAGGTGGCAATTAAAGGGATCAATTGGTTTGGCTTTGAAACA
ACGGACGGCTGCGTCCATGGGCTCTGGGACGGCCTTTCCAAATCTCTAAG
TGACTACCTGGATCTCTTACACACCCACGGGTTTAATGCGCTGCGACTCC
CCTTCTCCGTCAAGCTCGCCCTTGCCCTGGACAGCACGTACCCCAACTCT
AGTTTCGTTGCCGCAGACTCCTCACTTGCCGGCTTGAGCTGTGGGCAGAT
CATGGATCTACTGATTGTAGAATGTGGGAAGAGAGGGATTCTGGTTATGC
TGGACCAGCACCGATTAGACCCCGAAAGAGGGATCTCGGATTTGTGGTAT
GATGAGGGATATGAGGAGCCGGTCATCTTGAAGAGTTGGGATGTAATGGT
GGGGAGGTATAAGAAATATTGGAACGTTTTCGCGCTTGATCTGAAAAATG
AGCCGCACGGCTCCTGTACGTGGGGGAGTGGGGAGGCCCTCACTGATTGG
AAAGCGGCGAGCGAACGAGTGATGAAGTTTATCGCTCATGCCCACCCTGA
TTTTTTGGGGCTGTTCTTTGTGAGCGGGATATGGGGAGGGGGGGGGCATT
GGTGGGGAGGAAACTTCAGAGGGGTGAGGATGAAGCCAGTAGACCTTGGC
GAGGAGGGGATGAATCGACGGGTTGTCTACACGCCCCATGTTTACGGCCC
GGACGTGTACCCTCAGGCATATTTCTCGAGTTGGTCGTTTCCGAATAATT
TGCCCGCAATTTGGGAGGCGCATTGGGGATTTTTGCGGGGGATGGAAGGG
AGGGGCGGAGGGGAGGGAGGGAGGGCGGTGGTGGTCAGTGAGTGGGGAGG
TTTCTGTAAGGGGAAGGATGCCAAGTGGCAGGAGAAGGTGGCGAGATATC
TGTGGGAAAGAGGGATGGCGGATAACTTTTACTGGTGGTGCGTAGGTAGG
GAGAAGGAGCGGGAGGGGCAAGGTGGCTTTGCGTGCTATATTTGCTTTGA
CTATCTTTGTCTCATCCTGCAATTAAGCGCGTGA
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Synonyms
Publications