NO28G00800.1, NO28G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00800.1
Unique NameNO28G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1319
Alignment locationchr28:265654..266972 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:265654..266972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00800.1 vs.
Match: CBJ28902.1 (YihA3, YihA/EngB-like GTPase [Ectocarpus siliculosus])

HSP 1 Score: 229.6 bits (584), Expect = 1.600e-56
Identity = 125/311 (40.19%), Postives = 185/311 (59.49%), Query Frame = 0 
Query:   46 EDKLAKDSKRRRERADSVSETMLQDRRRHLERISEMAQETEKGEAGEEVTGGGEHMDSVILRRIRALGLGQKQRGKDTSRYRRG-PKDDAADPSEIGATGFATYMAAASGGGREGWPLFKHMLPEVAFAGHSNCGKSSLVNAVAGMAPRRGLARVSDRAGWTDAVFFYQLGKKPPVLTLADLPGYGHAVASMQQKRRWRDMTNDYFMSRKVLTLCCVLVDCVRGLCKEDQDLLESLRAKGVPVKVILTKGDLLDEVDLARSHALVVRDLQAMGLFDEEGDEGGREGGREDVLMVSSSTGAGVSVLWKALVE 356
            E+++   ++ R+ER DSV+++++++R +HL R+++                    +D+ + +  +A  LG ++R +    + +   +      S+  A GFA +M +AS    +GWP F+H LPEVA AGH+NCGKS+LVNA++G+ PRRG A  SDRAGWTD V FYQ+GKKPPVLT+ DLPGYGHAVA+    + W  M  +Y  +R+ L  CCVLVDC RG C+ED+ LL+ L  + +P +++LTK DLL    L+    L+ RDL  +         G   G       V  ++GAGV+ LWK L +
Sbjct:   98 EEEVMATTRGRKERRDSVTDSIVKEREQHLVRLAKA------------------EVDTAMAKTFKASSLGSRKRPRQAGGFNKAYDRTGKQVHSDFAAGGFARWMGSAS----KGWPTFRHRLPEVALAGHTNCGKSTLVNALSGIHPRRGPASTSDRAGWTDLVGFYQVGKKPPVLTMVDLPGYGHAVATRHAIKGWLRMIKEYITTRQELIRCCVLVDCTRGFCEEDRALLQLLAKRNIPYQIVLTKADLLTPELLSACVLLLRRDLSDLC--------GQEAGSTAPFSAVCGTSGAGVTTLWKDLAK 378
The following BLAST results are available for this feature:
BLAST of NO28G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28902.11.600e-5640.19YihA3, YihA/EngB-like GTPase [Ectocarpus siliculos... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00800NO28G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00800.1NO28G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00800.1.cds1NO28G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00800.1 ID=NO28G00800.1|Name=NO28G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
AACAGATTTATACACTGGTCTCCAGCAGCAGCATGCCTGCCACCATTAGT
TACGGCCAATGTACTCTGCGACAGCATTTCTGGAGATCAAAGACATATGC
AGTAGCTTTCGTTTCGCGAAGCAGCAGCACGAGTAGACGCCAGCGAGCCC
TCGACTCAATTACCACGGAAGACAAGCTGGCCAAGGACAGCAAACGACGG
CGAGAACGGGCCGACAGCGTCTCTGAAACTATGCTTCAAGACCGGCGTCG
GCACTTGGAACGCATCTCAGAGATGGCACAAGAGACAGAGAAGGGGGAGG
CAGGGGAAGAAGTCACGGGCGGGGGGGAGCACATGGACTCTGTGATACTA
CGACGCATTCGGGCTTTGGGCCTGGGCCAAAAACAGCGTGGAAAGGACAC
ATCTCGATATCGACGTGGGCCAAAAGATGATGCGGCAGATCCTTCAGAAA
TTGGGGCGACGGGGTTTGCGACTTACATGGCCGCAGCGAGTGGGGGAGGA
AGGGAGGGGTGGCCATTGTTTAAGCACATGTTGCCGGAGGTGGCGTTTGC
CGGGCATTCAAACTGTGGAAAATCGAGTTTGGTGAATGCCGTGGCGGGGA
TGGCGCCTCGTAGGGGGTTGGCACGGGTGTCGGATCGGGCAGGATGGACG
GATGCGGTTTTCTTTTATCAGTTGGGAAAGAAGCCGCCCGTGTTAACATT
GGCTGACCTACCGGGGTATGGGCATGCAGTGGCGTCCATGCAGCAGAAGC
GAAGATGGAGGGATATGACAAATGATTATTTCATGTCGCGAAAGGTGCTA
ACTTTGTGTTGTGTGTTGGTGGATTGCGTGAGGGGGCTATGCAAAGAGGA
TCAAGATTTACTGGAGTCCTTGAGAGCCAAGGGCGTGCCAGTCAAAGTGA
TACTGACGAAGGGTGACTTATTAGACGAGGTAGACTTGGCGCGTAGCCAC
GCATTGGTGGTGAGAGATTTGCAGGCAATGGGGTTGTTTGATGAGGAAGG
GGATGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGTATTGATGGTGAGTT
CGAGTACGGGAGCGGGCGTGTCGGTCTTGTGGAAAGCATTGGTGGAGTGC
ACAAGGAATGATGTCGTCTTTAAGGGTGATATTGGTTTGCATCGGGCATC
GTTGCGGTAGACAAGATGGAGAAGGGATGCCGTTGCGTCCGTAGGGAGGT
TTACATGGTACGAGTGGGGTGACAGGCGATAAAAAAAGCGAAACGGAAAT
AAGGCTCGTCTACCAGTTGGAGCGCAAAGTAGTGATGGTACGGGCCTAGC
GGGGCGCTGCAAGGCCTAA
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protein sequence of NO28G00800.1

>NO28G00800.1-protein ID=NO28G00800.1-protein|Name=NO28G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MPATISYGQCTLRQHFWRSKTYAVAFVSRSSSTSRRQRALDSITTEDKLA
KDSKRRRERADSVSETMLQDRRRHLERISEMAQETEKGEAGEEVTGGGEH
MDSVILRRIRALGLGQKQRGKDTSRYRRGPKDDAADPSEIGATGFATYMA
AASGGGREGWPLFKHMLPEVAFAGHSNCGKSSLVNAVAGMAPRRGLARVS
DRAGWTDAVFFYQLGKKPPVLTLADLPGYGHAVASMQQKRRWRDMTNDYF
MSRKVLTLCCVLVDCVRGLCKEDQDLLESLRAKGVPVKVILTKGDLLDEV
DLARSHALVVRDLQAMGLFDEEGDEGGREGGREDVLMVSSSTGAGVSVLW
KALVECTRNDVVFKGDIGLHRASLR*
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mRNA from alignment at chr28:265654..266972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00800.1 ID=NO28G00800.1|Name=NO28G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp|location=Sequence derived from alignment at chr28:265654..266972+ (Nannochloropsis oceanica)
AACAGATTTATACACTGGTCTCCAGCAGCAGCATGCCTGCCACCATTAGT
TACGGCCAATGTACTCTGCGACAGCATTTCTGGAGATCAAAGACATATGC
AGTAGCTTTCGTTTCGCGAAGCAGCAGCACGAGTAGACGCCAGCGAGCCC
TCGACTCAATTACCACGGAAGACAAGCTGGCCAAGGACAGCAAACGACGG
CGAGAACGGGCCGACAGCGTCTCTGAAACTATGCTTCAAGACCGGCGTCG
GCACTTGGAACGCATCTCAGAGATGGCACAAGAGACAGAGAAGGGGGAGG
CAGGGGAAGAAGTCACGGGCGGGGGGGAGCACATGGACTCTGTGATACTA
CGACGCATTCGGGCTTTGGGCCTGGGCCAAAAACAGCGTGGAAAGGACAC
ATCTCGATATCGACGTGGGCCAAAAGATGATGCGGCAGATCCTTCAGAAA
TTGGGGCGACGGGGTTTGCGACTTACATGGCCGCAGCGAGTGGGGGAGGA
AGGGAGGGGTGGCCATTGTTTAAGCACATGTTGCCGGAGGTGGCGTTTGC
CGGGCATTCAAACTGTGGAAAATCGAGTTTGGTGAATGCCGTGGCGGGGA
TGGCGCCTCGTAGGGGGTTGGCACGGGTGTCGGATCGGGCAGGATGGACG
GATGCGGTTTTCTTTTATCAGTTGGGAAAGAAGCCGCCCGTGTTAACATT
GGCTGACCTACCGGGGTATGGGCATGCAGTGGCGTCCATGCAGCAGAAGC
GAAGATGGAGGGATATGACAAATGATTATTTCATGTCGCGAAAGGTGCTA
ACTTTGTGTTGTGTGTTGGTGGATTGCGTGAGGGGGCTATGCAAAGAGGA
TCAAGATTTACTGGAGTCCTTGAGAGCCAAGGGCGTGCCAGTCAAAGTGA
TACTGACGAAGGGTGACTTATTAGACGAGGTAGACTTGGCGCGTAGCCAC
GCATTGGTGGTGAGAGATTTGCAGGCAATGGGGTTGTTTGATGAGGAAGG
GGATGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGTATTGATGGTGAGTT
CGAGTACGGGAGCGGGCGTGTCGGTCTTGTGGAAAGCATTGGTGGAGTGC
ACAAGGAATGATGTCGTCTTTAAGGGTGATATTGGTTTGCATCGGGCATC
GTTGCGGTAGACAAGATGGAGAAGGGATGCCGTTGCGTCCGTAGGGAGGT
TTACATGGTACGAGTGGGGTGACAGGCGATAAAAAAAGCGAAACGGAAAT
AAGGCTCGTCTACCAGTTGGAGCGCAAAGTAGTGATGGTACGGGCCTAGC
GGGGCGCTGCAAGGCCTAA
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Coding sequence (CDS) from alignment at chr28:265654..266972+

>NO28G00800.1 ID=NO28G00800.1|Name=NO28G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr28:265654..266972+ (Nannochloropsis oceanica)
ATGCCTGCCACCATTAGTTACGGCCAATGTACTCTGCGACAGCATTTCTG
GAGATCAAAGACATATGCAGTAGCTTTCGTTTCGCGAAGCAGCAGCACGA
GTAGACGCCAGCGAGCCCTCGACTCAATTACCACGGAAGACAAGCTGGCC
AAGGACAGCAAACGACGGCGAGAACGGGCCGACAGCGTCTCTGAAACTAT
GCTTCAAGACCGGCGTCGGCACTTGGAACGCATCTCAGAGATGGCACAAG
AGACAGAGAAGGGGGAGGCAGGGGAAGAAGTCACGGGCGGGGGGGAGCAC
ATGGACTCTGTGATACTACGACGCATTCGGGCTTTGGGCCTGGGCCAAAA
ACAGCGTGGAAAGGACACATCTCGATATCGACGTGGGCCAAAAGATGATG
CGGCAGATCCTTCAGAAATTGGGGCGACGGGGTTTGCGACTTACATGGCC
GCAGCGAGTGGGGGAGGAAGGGAGGGGTGGCCATTGTTTAAGCACATGTT
GCCGGAGGTGGCGTTTGCCGGGCATTCAAACTGTGGAAAATCGAGTTTGG
TGAATGCCGTGGCGGGGATGGCGCCTCGTAGGGGGTTGGCACGGGTGTCG
GATCGGGCAGGATGGACGGATGCGGTTTTCTTTTATCAGTTGGGAAAGAA
GCCGCCCGTGTTAACATTGGCTGACCTACCGGGGTATGGGCATGCAGTGG
CGTCCATGCAGCAGAAGCGAAGATGGAGGGATATGACAAATGATTATTTC
ATGTCGCGAAAGGTGCTAACTTTGTGTTGTGTGTTGGTGGATTGCGTGAG
GGGGCTATGCAAAGAGGATCAAGATTTACTGGAGTCCTTGAGAGCCAAGG
GCGTGCCAGTCAAAGTGATACTGACGAAGGGTGACTTATTAGACGAGGTA
GACTTGGCGCGTAGCCACGCATTGGTGGTGAGAGATTTGCAGGCAATGGG
GTTGTTTGATGAGGAAGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAGG
ATGTATTGATGGTGAGTTCGAGTACGGGAGCGGGCGTGTCGGTCTTGTGG
AAAGCATTGGTGGAGTGCACAAGGAATGATGTCGTCTTTAAGGGTGATAT
TGGTTTGCATCGGGCATCGTTGCGGTAG
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Synonyms
Publications