NO28G00780.1, NO28G00780.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00780.1
Unique Name	NO28G00780.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2151
Alignment location	chr28:259172..261322 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:259172..261322 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G00780.1 vs.
Match: EWM20919.1 (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1161.7 bits (3004), Expect = 0.000e+0
Identity = 605/701 (86.31%), Postives = 650/701 (92.72%), Query Frame = 0

Query:   12 LVLLTLLAVEQTAGFLLPTACMSNRSRRAAAAAVASPLSFSSKHQPVPNALTRLRATTEDAKAVAAASNKAKAVKDKEAAEREKKEEKNKPTAAASLAELGKYDVKRVRNFSIIAHIDHGKSTLADRLLESTKTVATRDMKAQLLDSMDIERERGITIKLNAARMLYRAKDGEDYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTLANVYLALENDLEIIPCLNKIDLPAAEPDRVQQEIEQTVGLDCTDAVRCSAKSGIGIEEILETIVARVPPPAPPTGGPLKALIFDSYYCPYRGVVVYFRVVDGEIRPKDRVKFMASGKEYEVVEVGFMTPEKRTVDVLRAGEVGYLSAGIKSVEDARVGDTVTNAKGGASEALPGYAEAKPTVYAGLFPVDADQFEVLRESLGKLKLNDAAISFEPEKNSAMGFGFRVGFLGLLHMDIVQERLEREYNLDLIVTAPSVVYKVISNKDEELLVDSPAKLPPPTERKEIQEPYVRVEMLSPTEYTGALMELAQDKRGELKEMKYLTPTRSALIYDMPLAEVITDFFDELKSRSKGYASMEYSLTGYRENDLVKLDVRINDEEASPLACIVHRDKSYPVGKALTEKLKELIPRQMFKVPIQACIGGKVIASCAISAMRKDVLAKCYGGDVSRKKKLLQKQAKGKKRMKTMGRVAVPQEAFQAVLKLKT 713
            L+LL LLA E    F+ P +   + SRR AA A     S +  HQ   +AL+RL+ATTE AK  A      K  KDKE+ +RE+K++KNKPTA A+ AELGKYDVKRVRNFSIIAHIDHGKSTLADRLLESTKTVATRDMKAQLLDSMDIERERGITIKLNAARMLYRAKDGEDYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDA+QGVEAQTLANVYLALENDLEIIP LNKIDLPAA+PDRVQ+EIEQTVGLDCT+AVR SAKSGIGI++ILE IVARVPPPAPPTGGPLKALIFDSYYCPYRGVVVYFRVVDGEIRPKDRVKFMASGKEYEVVEVGFMTPEKR V+VLRAGEVGYLSA IK+VEDARVGDT+T+A+GGAS+ALPGYAEA PTV+AGLFPVDADQFEVLRESLGKLKL+DAAISFEPEKNSAMGFGFRVGFLGLLHMDIVQERLEREYNLDLIVTAPSVVYKV++N+DEE+ +D+PAKLPP TERK I EPYVRVEML+PT+YTG+LMELAQDKRGELKEMKYLTPTR+ALIYDMPLAEVITDFFDELKSRSKGYASMEYSL GYRENDLV+LDVRINDEEA+PLACIVHRDKSY VGKALTEKLKELIPRQMFKVPIQACIGGKV+ASCA+SAMRKDVLAKCYGGDVSRKKKLLQKQAKGKKRMKTMG+V+VPQEAFQAVLKLK+
Sbjct:   78 LLLLMLLAAEHAVSFIFPLSTSPSTSRRDAARASWRRCSRAPPHQ---SALSRLQATTEGAKVAA------KVAKDKESGDRERKDDKNKPTAMATAAELGKYDVKRVRNFSIIAHIDHGKSTLADRLLESTKTVATRDMKAQLLDSMDIERERGITIKLNAARMLYRAKDGEDYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPDRVQEEIEQTVGLDCTEAVRASAKSGIGIDDILEQIVARVPPPAPPTGGPLKALIFDSYYCPYRGVVVYFRVVDGEIRPKDRVKFMASGKEYEVVEVGFMTPEKRAVEVLRAGEVGYLSAAIKAVEDARVGDTITSARGGASDALPGYAEANPTVFAGLFPVDADQFEVLRESLGKLKLSDAAISFEPEKNSAMGFGFRVGFLGLLHMDIVQERLEREYNLDLIVTAPSVVYKVLTNRDEEISIDTPAKLPPATERKAIYEPYVRVEMLAPTDYTGSLMELAQDKRGELKEMKYLTPTRTALIYDMPLAEVITDFFDELKSRSKGYASMEYSLVGYRENDLVRLDVRINDEEATPLACIVHRDKSYAVGKALTEKLKELIPRQMFKVPIQACIGGKVVASCALSAMRKDVLAKCYGGDVSRKKKLLQKQAKGKKRMKTMGKVSVPQEAFQAVLKLKS 769

The following BLAST results are available for this feature:

BLAST of NO28G00780.1 vs.

BLAST of NO28G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20919.1	0.000e+0	86.31	gtp-binding protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00780	NO28G00780	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00780.1	NO28G00780.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00780.1.cds1	NO28G00780.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:259172..261322+
coding sequence from alignment at chr28:259172..261322+

mRNA sequence

>NO28G00780.1 ID=NO28G00780.1|Name=NO28G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp
ATGAGGCGGCAAACTTCCCAGATTATTCTTCCCCTCGTTCTCCTGACGCT
GCTAGCGGTGGAGCAGACGGCGGGCTTTCTCCTTCCCACTGCTTGCATGA
GCAACAGGAGCAGAAGAGCCGCTGCCGCTGCTGTTGCCTCCCCCCTGTCC
TTCTCATCAAAACATCAGCCCGTCCCCAACGCCCTAACCCGCCTTCGTGC
CACCACTGAAGATGCCAAGGCTGTTGCCGCGGCTTCCAACAAGGCGAAAG
CCGTCAAGGACAAGGAGGCAGCGGAGCGGGAGAAGAAGGAGGAGAAAAAC
AAGCCGACCGCGGCGGCTTCGCTGGCGGAGCTAGGCAAGTACGACGTTAA
ACGTGTACGAAACTTCAGTATTATTGCACATATTGACCATGGAAAGAGCA
CGTTGGCGGATCGATTGTTGGAGAGTACGAAGACGGTGGCGACGAGGGAC
ATGAAGGCGCAGCTTTTGGATAGCATGGACATCGAGCGCGAACGAGGTAT
TACCATCAAGCTCAACGCGGCGCGCATGCTCTACCGCGCAAAAGATGGGG
AGGATTACATTTTGAACCTTATTGACACGCCCGGCCATGTGGACTTTTCC
TACGAAGTTTCCCGCTCCCTCGCCGCCTGTGAGGGGGCGTTGCTTGTGGT
GGATGCAGCGCAAGGCGTCGAGGCTCAAACACTCGCCAACGTCTACCTTG
CTCTGGAAAACGACCTGGAAATCATTCCCTGCCTCAATAAAATAGACCTC
CCCGCCGCGGAGCCCGATCGAGTGCAGCAAGAGATCGAGCAGACCGTGGG
CTTGGACTGCACGGACGCCGTGCGTTGCTCGGCCAAGAGCGGGATTGGGA
TTGAAGAAATTCTGGAGACAATTGTGGCACGTGTTCCTCCTCCAGCACCT
CCCACTGGAGGGCCGCTCAAGGCACTGATTTTCGACAGCTATTATTGTCC
GTATCGGGGCGTGGTGGTGTACTTCCGGGTAGTGGATGGCGAGATCCGGC
CGAAGGACCGCGTGAAGTTCATGGCGTCGGGGAAGGAGTACGAGGTAGTG
GAGGTGGGCTTCATGACGCCCGAGAAACGAACCGTAGACGTGCTGAGAGC
CGGGGAGGTGGGCTACCTCTCCGCGGGGATCAAGTCGGTGGAGGACGCCA
GGGTGGGGGACACGGTGACCAACGCCAAGGGGGGGGCTTCGGAGGCGCTG
CCGGGGTACGCCGAGGCCAAGCCCACGGTGTACGCGGGGCTCTTTCCTGT
GGACGCGGACCAGTTCGAGGTGCTGAGGGAGAGCCTGGGGAAGTTGAAGC
TGAACGACGCGGCCATCTCGTTCGAGCCGGAGAAGAACTCGGCCATGGGC
TTCGGCTTCCGCGTCGGCTTCTTGGGCCTCTTGCACATGGATATCGTGCA
GGAGAGGCTGGAGAGGGAGTACAACCTAGACCTGATCGTAACGGCGCCCT
CAGTCGTCTACAAGGTCATCTCGAACAAAGACGAGGAGCTTCTAGTAGAC
TCGCCGGCAAAGCTGCCCCCGCCAACGGAGCGAAAGGAGATCCAAGAGCC
GTACGTGAGAGTGGAGATGCTTTCTCCCACTGAATACACGGGAGCCTTAA
TGGAGCTGGCGCAAGATAAGAGGGGGGAGCTGAAAGAGATGAAATACCTG
ACGCCCACCCGGTCGGCCCTGATCTACGACATGCCCTTGGCGGAGGTGAT
CACTGACTTTTTCGATGAGCTAAAGAGTCGGAGCAAGGGGTACGCGAGCA
TGGAGTACAGCCTCACTGGCTACAGGGAGAATGACCTTGTCAAACTAGAT
GTGAGAATCAATGACGAGGAAGCCTCGCCCTTGGCCTGCATCGTCCACAG
AGATAAGAGCTACCCGGTTGGGAAGGCTCTCACGGAAAAGCTGAAGGAGT
TAATTCCGCGGCAGATGTTCAAGGTCCCGATCCAGGCATGCATTGGAGGC
AAGGTGATCGCGTCCTGTGCTATCTCAGCCATGAGGAAAGACGTTCTGGC
CAAGTGCTACGGCGGCGATGTAAGCCGGAAGAAGAAGCTGCTCCAGAAGC
AGGCTAAAGGGAAAAAGAGGATGAAGACCATGGGCAGGGTGGCGGTGCCC
CAGGAGGCGTTCCAGGCCGTGCTGAAGCTCAAGACGGGCCCGCAGAAGTA
G

protein sequence of NO28G00780.1

>NO28G00780.1-protein ID=NO28G00780.1-protein|Name=NO28G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=717bp
MRRQTSQIILPLVLLTLLAVEQTAGFLLPTACMSNRSRRAAAAAVASPLS
FSSKHQPVPNALTRLRATTEDAKAVAAASNKAKAVKDKEAAEREKKEEKN
KPTAAASLAELGKYDVKRVRNFSIIAHIDHGKSTLADRLLESTKTVATRD
MKAQLLDSMDIERERGITIKLNAARMLYRAKDGEDYILNLIDTPGHVDFS
YEVSRSLAACEGALLVVDAAQGVEAQTLANVYLALENDLEIIPCLNKIDL
PAAEPDRVQQEIEQTVGLDCTDAVRCSAKSGIGIEEILETIVARVPPPAP
PTGGPLKALIFDSYYCPYRGVVVYFRVVDGEIRPKDRVKFMASGKEYEVV
EVGFMTPEKRTVDVLRAGEVGYLSAGIKSVEDARVGDTVTNAKGGASEAL
PGYAEAKPTVYAGLFPVDADQFEVLRESLGKLKLNDAAISFEPEKNSAMG
FGFRVGFLGLLHMDIVQERLEREYNLDLIVTAPSVVYKVISNKDEELLVD
SPAKLPPPTERKEIQEPYVRVEMLSPTEYTGALMELAQDKRGELKEMKYL
TPTRSALIYDMPLAEVITDFFDELKSRSKGYASMEYSLTGYRENDLVKLD
VRINDEEASPLACIVHRDKSYPVGKALTEKLKELIPRQMFKVPIQACIGG
KVIASCAISAMRKDVLAKCYGGDVSRKKKLLQKQAKGKKRMKTMGRVAVP
QEAFQAVLKLKTGPQK*

mRNA from alignment at chr28:259172..261322+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00780.1 ID=NO28G00780.1|Name=NO28G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at chr28:259172..261322+ (Nannochloropsis oceanica)
ATGAGGCGGCAAACTTCCCAGATTATTCTTCCCCTCGTTCTCCTGACGCT
GCTAGCGGTGGAGCAGACGGCGGGCTTTCTCCTTCCCACTGCTTGCATGA
GCAACAGGAGCAGAAGAGCCGCTGCCGCTGCTGTTGCCTCCCCCCTGTCC
TTCTCATCAAAACATCAGCCCGTCCCCAACGCCCTAACCCGCCTTCGTGC
CACCACTGAAGATGCCAAGGCTGTTGCCGCGGCTTCCAACAAGGCGAAAG
CCGTCAAGGACAAGGAGGCAGCGGAGCGGGAGAAGAAGGAGGAGAAAAAC
AAGCCGACCGCGGCGGCTTCGCTGGCGGAGCTAGGCAAGTACGACGTTAA
ACGTGTACGAAACTTCAGTATTATTGCACATATTGACCATGGAAAGAGCA
CGTTGGCGGATCGATTGTTGGAGAGTACGAAGACGGTGGCGACGAGGGAC
ATGAAGGCGCAGCTTTTGGATAGCATGGACATCGAGCGCGAACGAGGTAT
TACCATCAAGCTCAACGCGGCGCGCATGCTCTACCGCGCAAAAGATGGGG
AGGATTACATTTTGAACCTTATTGACACGCCCGGCCATGTGGACTTTTCC
TACGAAGTTTCCCGCTCCCTCGCCGCCTGTGAGGGGGCGTTGCTTGTGGT
GGATGCAGCGCAAGGCGTCGAGGCTCAAACACTCGCCAACGTCTACCTTG
CTCTGGAAAACGACCTGGAAATCATTCCCTGCCTCAATAAAATAGACCTC
CCCGCCGCGGAGCCCGATCGAGTGCAGCAAGAGATCGAGCAGACCGTGGG
CTTGGACTGCACGGACGCCGTGCGTTGCTCGGCCAAGAGCGGGATTGGGA
TTGAAGAAATTCTGGAGACAATTGTGGCACGTGTTCCTCCTCCAGCACCT
CCCACTGGAGGGCCGCTCAAGGCACTGATTTTCGACAGCTATTATTGTCC
GTATCGGGGCGTGGTGGTGTACTTCCGGGTAGTGGATGGCGAGATCCGGC
CGAAGGACCGCGTGAAGTTCATGGCGTCGGGGAAGGAGTACGAGGTAGTG
GAGGTGGGCTTCATGACGCCCGAGAAACGAACCGTAGACGTGCTGAGAGC
CGGGGAGGTGGGCTACCTCTCCGCGGGGATCAAGTCGGTGGAGGACGCCA
GGGTGGGGGACACGGTGACCAACGCCAAGGGGGGGGCTTCGGAGGCGCTG
CCGGGGTACGCCGAGGCCAAGCCCACGGTGTACGCGGGGCTCTTTCCTGT
GGACGCGGACCAGTTCGAGGTGCTGAGGGAGAGCCTGGGGAAGTTGAAGC
TGAACGACGCGGCCATCTCGTTCGAGCCGGAGAAGAACTCGGCCATGGGC
TTCGGCTTCCGCGTCGGCTTCTTGGGCCTCTTGCACATGGATATCGTGCA
GGAGAGGCTGGAGAGGGAGTACAACCTAGACCTGATCGTAACGGCGCCCT
CAGTCGTCTACAAGGTCATCTCGAACAAAGACGAGGAGCTTCTAGTAGAC
TCGCCGGCAAAGCTGCCCCCGCCAACGGAGCGAAAGGAGATCCAAGAGCC
GTACGTGAGAGTGGAGATGCTTTCTCCCACTGAATACACGGGAGCCTTAA
TGGAGCTGGCGCAAGATAAGAGGGGGGAGCTGAAAGAGATGAAATACCTG
ACGCCCACCCGGTCGGCCCTGATCTACGACATGCCCTTGGCGGAGGTGAT
CACTGACTTTTTCGATGAGCTAAAGAGTCGGAGCAAGGGGTACGCGAGCA
TGGAGTACAGCCTCACTGGCTACAGGGAGAATGACCTTGTCAAACTAGAT
GTGAGAATCAATGACGAGGAAGCCTCGCCCTTGGCCTGCATCGTCCACAG
AGATAAGAGCTACCCGGTTGGGAAGGCTCTCACGGAAAAGCTGAAGGAGT
TAATTCCGCGGCAGATGTTCAAGGTCCCGATCCAGGCATGCATTGGAGGC
AAGGTGATCGCGTCCTGTGCTATCTCAGCCATGAGGAAAGACGTTCTGGC
CAAGTGCTACGGCGGCGATGTAAGCCGGAAGAAGAAGCTGCTCCAGAAGC
AGGCTAAAGGGAAAAAGAGGATGAAGACCATGGGCAGGGTGGCGGTGCCC
CAGGAGGCGTTCCAGGCCGTGCTGAAGCTCAAGACGGGCCCGCAGAAGTA
G

Coding sequence (CDS) from alignment at chr28:259172..261322+

>NO28G00780.1 ID=NO28G00780.1|Name=NO28G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=2151bp|location=Sequence derived from alignment at chr28:259172..261322+ (Nannochloropsis oceanica)
ATGAGGCGGCAAACTTCCCAGATTATTCTTCCCCTCGTTCTCCTGACGCT
GCTAGCGGTGGAGCAGACGGCGGGCTTTCTCCTTCCCACTGCTTGCATGA
GCAACAGGAGCAGAAGAGCCGCTGCCGCTGCTGTTGCCTCCCCCCTGTCC
TTCTCATCAAAACATCAGCCCGTCCCCAACGCCCTAACCCGCCTTCGTGC
CACCACTGAAGATGCCAAGGCTGTTGCCGCGGCTTCCAACAAGGCGAAAG
CCGTCAAGGACAAGGAGGCAGCGGAGCGGGAGAAGAAGGAGGAGAAAAAC
AAGCCGACCGCGGCGGCTTCGCTGGCGGAGCTAGGCAAGTACGACGTTAA
ACGTGTACGAAACTTCAGTATTATTGCACATATTGACCATGGAAAGAGCA
CGTTGGCGGATCGATTGTTGGAGAGTACGAAGACGGTGGCGACGAGGGAC
ATGAAGGCGCAGCTTTTGGATAGCATGGACATCGAGCGCGAACGAGGTAT
TACCATCAAGCTCAACGCGGCGCGCATGCTCTACCGCGCAAAAGATGGGG
AGGATTACATTTTGAACCTTATTGACACGCCCGGCCATGTGGACTTTTCC
TACGAAGTTTCCCGCTCCCTCGCCGCCTGTGAGGGGGCGTTGCTTGTGGT
GGATGCAGCGCAAGGCGTCGAGGCTCAAACACTCGCCAACGTCTACCTTG
CTCTGGAAAACGACCTGGAAATCATTCCCTGCCTCAATAAAATAGACCTC
CCCGCCGCGGAGCCCGATCGAGTGCAGCAAGAGATCGAGCAGACCGTGGG
CTTGGACTGCACGGACGCCGTGCGTTGCTCGGCCAAGAGCGGGATTGGGA
TTGAAGAAATTCTGGAGACAATTGTGGCACGTGTTCCTCCTCCAGCACCT
CCCACTGGAGGGCCGCTCAAGGCACTGATTTTCGACAGCTATTATTGTCC
GTATCGGGGCGTGGTGGTGTACTTCCGGGTAGTGGATGGCGAGATCCGGC
CGAAGGACCGCGTGAAGTTCATGGCGTCGGGGAAGGAGTACGAGGTAGTG
GAGGTGGGCTTCATGACGCCCGAGAAACGAACCGTAGACGTGCTGAGAGC
CGGGGAGGTGGGCTACCTCTCCGCGGGGATCAAGTCGGTGGAGGACGCCA
GGGTGGGGGACACGGTGACCAACGCCAAGGGGGGGGCTTCGGAGGCGCTG
CCGGGGTACGCCGAGGCCAAGCCCACGGTGTACGCGGGGCTCTTTCCTGT
GGACGCGGACCAGTTCGAGGTGCTGAGGGAGAGCCTGGGGAAGTTGAAGC
TGAACGACGCGGCCATCTCGTTCGAGCCGGAGAAGAACTCGGCCATGGGC
TTCGGCTTCCGCGTCGGCTTCTTGGGCCTCTTGCACATGGATATCGTGCA
GGAGAGGCTGGAGAGGGAGTACAACCTAGACCTGATCGTAACGGCGCCCT
CAGTCGTCTACAAGGTCATCTCGAACAAAGACGAGGAGCTTCTAGTAGAC
TCGCCGGCAAAGCTGCCCCCGCCAACGGAGCGAAAGGAGATCCAAGAGCC
GTACGTGAGAGTGGAGATGCTTTCTCCCACTGAATACACGGGAGCCTTAA
TGGAGCTGGCGCAAGATAAGAGGGGGGAGCTGAAAGAGATGAAATACCTG
ACGCCCACCCGGTCGGCCCTGATCTACGACATGCCCTTGGCGGAGGTGAT
CACTGACTTTTTCGATGAGCTAAAGAGTCGGAGCAAGGGGTACGCGAGCA
TGGAGTACAGCCTCACTGGCTACAGGGAGAATGACCTTGTCAAACTAGAT
GTGAGAATCAATGACGAGGAAGCCTCGCCCTTGGCCTGCATCGTCCACAG
AGATAAGAGCTACCCGGTTGGGAAGGCTCTCACGGAAAAGCTGAAGGAGT
TAATTCCGCGGCAGATGTTCAAGGTCCCGATCCAGGCATGCATTGGAGGC
AAGGTGATCGCGTCCTGTGCTATCTCAGCCATGAGGAAAGACGTTCTGGC
CAAGTGCTACGGCGGCGATGTAAGCCGGAAGAAGAAGCTGCTCCAGAAGC
AGGCTAAAGGGAAAAAGAGGATGAAGACCATGGGCAGGGTGGCGGTGCCC
CAGGAGGCGTTCCAGGCCGTGCTGAAGCTCAAGACGGGCCCGCAGAAGTA
G

Synonyms

Publications