NO28G00760.1, NO28G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00760.1
Unique NameNO28G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1656
Alignment locationchr28:255715..257370 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:255715..257370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00760.1 vs.
Match: EWM20922.1 (carboxyl transferase [Nannochloropsis gaditana])

HSP 1 Score: 956.1 bits (2470), Expect = 4.900e-275
Identity = 474/551 (86.03%), Postives = 512/551 (92.92%), Query Frame = 0 
Query:    3 AILSPRLRLTQLLLRQSNSTLVRQQ--QSFSSKIKAVADRPSVVTLKNAFRVRLEEERAKALQGGGEKRVAKQHAKGKLTARERLSLLLDEGSFRESDMLKTHRCTDFGMQDEMYPGDGVVTGWGTVNGRPVYVFSQDFTVFGGSLSETHAQKICKIMDKAVQSGVPVIGLNDSGGARIQEGVDSLGGYAEVFQRNVNASGVVPQISLVMGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVRTVTQEEISQEELGGAETHTTMSGVAHCAFDNDIEALRATRLLLDFLPLNSREKPPAVHTEDSRHRQEPCLRYLCPDDPNHPYDMAEVVKKVVDEGNFFEIMPGFAKNIVTGFARLEGHPVAIVANNPAHLAGCLDINSSVKAGRFVRFADAFNIPIVTFVDVPGFLPGVDQEHNGIIRNGAKLLFAYAEATVPKVTVITRKAYGGAYDVMSSKHLRGDANFAWPGAEIAVMGAKGAVGIIFRGKDVEANTLKYTDRFANPMVAAQRGYIDEVIDPACTRQHLCKELEILRNKKVENPHRKHSNVPL 552
            A +  R   T   LRQ  + +  QQ  +  SSK+KAV  +PSVVTLKNAFRVRLE+ERAKALQGGGEKRVAKQHAKGKLTARERLSLLLDEG+FRESDMLKTHRCTDFGMQ E+YPGDGVVTGWGT++GRPVYVFSQDFTVFGGSLSETHAQKICK+M+KA+QSGVPVIGLNDSGGARIQEGVDSLGGYAEVFQRNV ASGVVPQISLV+GPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVV+TVTQE ISQEELGGA+THT+MSGVAHCAFDN++EA+RATRLLL +LPLNSR+KPP+V T DSR+RQE CLRYLCPDDPNHPY+M EVVKKVVDEG  FEIMP FA+NI TGFAR+EGHPVA++ANNPAHLAGCLDI+SSVKA RFVRFADAFN+PI+TFVDVPGFLPGVDQEH+GIIRNGAKLLFAYAEATVPKVTVITRKAYGGAYDVMSSKHLRGDANFAWPGAEIAVMG KGAV IIFRGKDVEANTL+YT+RFANPMVAA RGYIDEVIDPA TRQHLC+ELE+LRNK VENP RKHSNVPL
Sbjct:    8 ATILSRFPSTHQTLRQVRTRVHLQQVLRPLSSKVKAVNHQPSVVTLKNAFRVRLEDERAKALQGGGEKRVAKQHAKGKLTARERLSLLLDEGTFRESDMLKTHRCTDFGMQKEVYPGDGVVTGWGTIDGRPVYVFSQDFTVFGGSLSETHAQKICKVMEKAMQSGVPVIGLNDSGGARIQEGVDSLGGYAEVFQRNVLASGVVPQISLVLGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVKTVTQEAISQEELGGADTHTSMSGVAHCAFDNELEAIRATRLLLGYLPLNSRQKPPSVQTADSRYRQEACLRYLCPDDPNHPYEMREVVKKVVDEGEVFEIMPAFAQNIFTGFARMEGHPVAVIANNPAHLAGCLDIDSSVKAARFVRFADAFNLPILTFVDVPGFLPGVDQEHSGIIRNGAKLLFAYAEATVPKVTVITRKAYGGAYDVMSSKHLRGDANFAWPGAEIAVMGPKGAVEIIFRGKDVEANTLEYTERFANPMVAAARGYIDEVIDPAMTRQHLCEELEVLRNKSVENPPRKHSNVPL 558
The following BLAST results are available for this feature:
BLAST of NO28G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20922.14.900e-27586.03carboxyl transferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00760NO28G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00760.1NO28G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00760.1.cds1NO28G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00760.1 ID=NO28G00760.1|Name=NO28G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp
ATGAACGCCATCTTGTCCCCTCGCTTGCGCCTGACCCAGCTGCTGCTGCG
CCAAAGCAACAGCACGCTGGTGCGGCAGCAGCAGTCGTTCTCATCCAAGA
TCAAGGCCGTGGCGGACCGGCCGAGCGTAGTGACACTCAAGAATGCCTTC
CGTGTGCGCCTGGAGGAGGAACGGGCCAAGGCCTTGCAAGGCGGGGGAGA
GAAACGTGTGGCCAAGCAGCATGCCAAGGGCAAGCTTACGGCACGGGAGC
GGCTATCATTGCTGCTGGATGAGGGCTCGTTTCGGGAGTCTGACATGCTC
AAGACGCATCGATGCACGGACTTTGGGATGCAAGACGAGATGTACCCGGG
GGATGGCGTGGTAACGGGCTGGGGAACCGTGAATGGGCGCCCTGTCTATG
TGTTTAGTCAGGATTTCACCGTATTTGGTGGATCATTGTCTGAAACGCAC
GCGCAGAAGATTTGCAAGATTATGGACAAGGCAGTGCAGTCGGGCGTGCC
TGTCATTGGGCTAAACGACTCGGGGGGTGCGCGCATCCAGGAAGGGGTCG
ATTCGCTGGGTGGGTACGCCGAGGTGTTTCAGCGCAATGTGAATGCGTCA
GGAGTAGTGCCTCAGATCAGCTTGGTCATGGGTCCATGTGCGGGGGGTGC
GGTGTACTCGCCGGCGATGACCGATTTTATTTTCATGGTGCGTCGGACTT
CGTACATGTTTGTGACAGGGCCGGATGTCGTCAGGACCGTGACACAGGAG
GAGATCTCGCAAGAGGAGCTGGGGGGCGCAGAGACACACACCACCATGTC
GGGCGTGGCCCACTGCGCATTTGACAATGACATTGAGGCTCTGCGGGCTA
CGAGGCTGTTGCTCGATTTCCTTCCGCTAAATTCACGCGAGAAGCCCCCA
GCCGTGCACACTGAAGACTCGCGCCATCGTCAAGAGCCCTGCCTGCGCTA
TTTGTGCCCAGATGACCCCAATCATCCGTATGATATGGCGGAAGTTGTAA
AGAAGGTGGTGGATGAAGGAAATTTTTTCGAGATTATGCCCGGTTTCGCC
AAGAACATTGTCACGGGTTTCGCACGCTTGGAGGGCCACCCGGTCGCCAT
CGTCGCAAACAACCCGGCGCATCTGGCTGGATGTTTGGACATAAATTCGT
CGGTGAAAGCGGGAAGGTTTGTGCGGTTCGCCGATGCGTTTAATATCCCG
ATCGTGACTTTCGTGGATGTCCCGGGGTTTTTGCCGGGGGTGGATCAGGA
GCACAACGGCATCATCCGAAACGGCGCGAAGCTGCTCTTTGCCTACGCTG
AAGCAACTGTGCCGAAGGTTACGGTGATCACGCGTAAGGCCTACGGGGGG
GCTTATGACGTCATGTCGAGTAAGCATCTGAGGGGCGACGCGAACTTTGC
ATGGCCGGGGGCCGAGATCGCTGTTATGGGCGCTAAGGGCGCCGTGGGCA
TAATCTTCAGGGGCAAGGATGTGGAGGCCAACACATTGAAGTACACAGAC
AGGTTTGCGAACCCGATGGTGGCGGCTCAGAGGGGATATATTGATGAGGT
GATTGACCCGGCCTGCACGAGGCAGCATCTCTGCAAGGAATTGGAAATCC
TGCGAAATAAGAAGGTGGAAAACCCGCACCGGAAGCACAGCAATGTGCCT
TTATAA
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protein sequence of NO28G00760.1

>NO28G00760.1-protein ID=NO28G00760.1-protein|Name=NO28G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MNAILSPRLRLTQLLLRQSNSTLVRQQQSFSSKIKAVADRPSVVTLKNAF
RVRLEEERAKALQGGGEKRVAKQHAKGKLTARERLSLLLDEGSFRESDML
KTHRCTDFGMQDEMYPGDGVVTGWGTVNGRPVYVFSQDFTVFGGSLSETH
AQKICKIMDKAVQSGVPVIGLNDSGGARIQEGVDSLGGYAEVFQRNVNAS
GVVPQISLVMGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVRTVTQE
EISQEELGGAETHTTMSGVAHCAFDNDIEALRATRLLLDFLPLNSREKPP
AVHTEDSRHRQEPCLRYLCPDDPNHPYDMAEVVKKVVDEGNFFEIMPGFA
KNIVTGFARLEGHPVAIVANNPAHLAGCLDINSSVKAGRFVRFADAFNIP
IVTFVDVPGFLPGVDQEHNGIIRNGAKLLFAYAEATVPKVTVITRKAYGG
AYDVMSSKHLRGDANFAWPGAEIAVMGAKGAVGIIFRGKDVEANTLKYTD
RFANPMVAAQRGYIDEVIDPACTRQHLCKELEILRNKKVENPHRKHSNVP
L*
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mRNA from alignment at chr28:255715..257370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00760.1 ID=NO28G00760.1|Name=NO28G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at chr28:255715..257370+ (Nannochloropsis oceanica)
ATGAACGCCATCTTGTCCCCTCGCTTGCGCCTGACCCAGCTGCTGCTGCG
CCAAAGCAACAGCACGCTGGTGCGGCAGCAGCAGTCGTTCTCATCCAAGA
TCAAGGCCGTGGCGGACCGGCCGAGCGTAGTGACACTCAAGAATGCCTTC
CGTGTGCGCCTGGAGGAGGAACGGGCCAAGGCCTTGCAAGGCGGGGGAGA
GAAACGTGTGGCCAAGCAGCATGCCAAGGGCAAGCTTACGGCACGGGAGC
GGCTATCATTGCTGCTGGATGAGGGCTCGTTTCGGGAGTCTGACATGCTC
AAGACGCATCGATGCACGGACTTTGGGATGCAAGACGAGATGTACCCGGG
GGATGGCGTGGTAACGGGCTGGGGAACCGTGAATGGGCGCCCTGTCTATG
TGTTTAGTCAGGATTTCACCGTATTTGGTGGATCATTGTCTGAAACGCAC
GCGCAGAAGATTTGCAAGATTATGGACAAGGCAGTGCAGTCGGGCGTGCC
TGTCATTGGGCTAAACGACTCGGGGGGTGCGCGCATCCAGGAAGGGGTCG
ATTCGCTGGGTGGGTACGCCGAGGTGTTTCAGCGCAATGTGAATGCGTCA
GGAGTAGTGCCTCAGATCAGCTTGGTCATGGGTCCATGTGCGGGGGGTGC
GGTGTACTCGCCGGCGATGACCGATTTTATTTTCATGGTGCGTCGGACTT
CGTACATGTTTGTGACAGGGCCGGATGTCGTCAGGACCGTGACACAGGAG
GAGATCTCGCAAGAGGAGCTGGGGGGCGCAGAGACACACACCACCATGTC
GGGCGTGGCCCACTGCGCATTTGACAATGACATTGAGGCTCTGCGGGCTA
CGAGGCTGTTGCTCGATTTCCTTCCGCTAAATTCACGCGAGAAGCCCCCA
GCCGTGCACACTGAAGACTCGCGCCATCGTCAAGAGCCCTGCCTGCGCTA
TTTGTGCCCAGATGACCCCAATCATCCGTATGATATGGCGGAAGTTGTAA
AGAAGGTGGTGGATGAAGGAAATTTTTTCGAGATTATGCCCGGTTTCGCC
AAGAACATTGTCACGGGTTTCGCACGCTTGGAGGGCCACCCGGTCGCCAT
CGTCGCAAACAACCCGGCGCATCTGGCTGGATGTTTGGACATAAATTCGT
CGGTGAAAGCGGGAAGGTTTGTGCGGTTCGCCGATGCGTTTAATATCCCG
ATCGTGACTTTCGTGGATGTCCCGGGGTTTTTGCCGGGGGTGGATCAGGA
GCACAACGGCATCATCCGAAACGGCGCGAAGCTGCTCTTTGCCTACGCTG
AAGCAACTGTGCCGAAGGTTACGGTGATCACGCGTAAGGCCTACGGGGGG
GCTTATGACGTCATGTCGAGTAAGCATCTGAGGGGCGACGCGAACTTTGC
ATGGCCGGGGGCCGAGATCGCTGTTATGGGCGCTAAGGGCGCCGTGGGCA
TAATCTTCAGGGGCAAGGATGTGGAGGCCAACACATTGAAGTACACAGAC
AGGTTTGCGAACCCGATGGTGGCGGCTCAGAGGGGATATATTGATGAGGT
GATTGACCCGGCCTGCACGAGGCAGCATCTCTGCAAGGAATTGGAAATCC
TGCGAAATAAGAAGGTGGAAAACCCGCACCGGAAGCACAGCAATGTGCCT
TTATAA
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Coding sequence (CDS) from alignment at chr28:255715..257370+

>NO28G00760.1 ID=NO28G00760.1|Name=NO28G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr28:255715..257370+ (Nannochloropsis oceanica)
ATGAACGCCATCTTGTCCCCTCGCTTGCGCCTGACCCAGCTGCTGCTGCG
CCAAAGCAACAGCACGCTGGTGCGGCAGCAGCAGTCGTTCTCATCCAAGA
TCAAGGCCGTGGCGGACCGGCCGAGCGTAGTGACACTCAAGAATGCCTTC
CGTGTGCGCCTGGAGGAGGAACGGGCCAAGGCCTTGCAAGGCGGGGGAGA
GAAACGTGTGGCCAAGCAGCATGCCAAGGGCAAGCTTACGGCACGGGAGC
GGCTATCATTGCTGCTGGATGAGGGCTCGTTTCGGGAGTCTGACATGCTC
AAGACGCATCGATGCACGGACTTTGGGATGCAAGACGAGATGTACCCGGG
GGATGGCGTGGTAACGGGCTGGGGAACCGTGAATGGGCGCCCTGTCTATG
TGTTTAGTCAGGATTTCACCGTATTTGGTGGATCATTGTCTGAAACGCAC
GCGCAGAAGATTTGCAAGATTATGGACAAGGCAGTGCAGTCGGGCGTGCC
TGTCATTGGGCTAAACGACTCGGGGGGTGCGCGCATCCAGGAAGGGGTCG
ATTCGCTGGGTGGGTACGCCGAGGTGTTTCAGCGCAATGTGAATGCGTCA
GGAGTAGTGCCTCAGATCAGCTTGGTCATGGGTCCATGTGCGGGGGGTGC
GGTGTACTCGCCGGCGATGACCGATTTTATTTTCATGGTGCGTCGGACTT
CGTACATGTTTGTGACAGGGCCGGATGTCGTCAGGACCGTGACACAGGAG
GAGATCTCGCAAGAGGAGCTGGGGGGCGCAGAGACACACACCACCATGTC
GGGCGTGGCCCACTGCGCATTTGACAATGACATTGAGGCTCTGCGGGCTA
CGAGGCTGTTGCTCGATTTCCTTCCGCTAAATTCACGCGAGAAGCCCCCA
GCCGTGCACACTGAAGACTCGCGCCATCGTCAAGAGCCCTGCCTGCGCTA
TTTGTGCCCAGATGACCCCAATCATCCGTATGATATGGCGGAAGTTGTAA
AGAAGGTGGTGGATGAAGGAAATTTTTTCGAGATTATGCCCGGTTTCGCC
AAGAACATTGTCACGGGTTTCGCACGCTTGGAGGGCCACCCGGTCGCCAT
CGTCGCAAACAACCCGGCGCATCTGGCTGGATGTTTGGACATAAATTCGT
CGGTGAAAGCGGGAAGGTTTGTGCGGTTCGCCGATGCGTTTAATATCCCG
ATCGTGACTTTCGTGGATGTCCCGGGGTTTTTGCCGGGGGTGGATCAGGA
GCACAACGGCATCATCCGAAACGGCGCGAAGCTGCTCTTTGCCTACGCTG
AAGCAACTGTGCCGAAGGTTACGGTGATCACGCGTAAGGCCTACGGGGGG
GCTTATGACGTCATGTCGAGTAAGCATCTGAGGGGCGACGCGAACTTTGC
ATGGCCGGGGGCCGAGATCGCTGTTATGGGCGCTAAGGGCGCCGTGGGCA
TAATCTTCAGGGGCAAGGATGTGGAGGCCAACACATTGAAGTACACAGAC
AGGTTTGCGAACCCGATGGTGGCGGCTCAGAGGGGATATATTGATGAGGT
GATTGACCCGGCCTGCACGAGGCAGCATCTCTGCAAGGAATTGGAAATCC
TGCGAAATAAGAAGGTGGAAAACCCGCACCGGAAGCACAGCAATGTGCCT
TTATAA
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Synonyms
Publications