NO28G00650.1, NO28G00650.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00650.1
Unique Name	NO28G00650.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2169
Alignment location	chr28:224797..226965 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:224797..226965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO28G00650.1 vs.

BLAST of NO28G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00650	NO28G00650	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00650.1	NO28G00650.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00650.1.cds1	NO28G00650.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:224797..226965+
coding sequence from alignment at chr28:224797..226965+

mRNA sequence

>NO28G00650.1 ID=NO28G00650.1|Name=NO28G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
ATGCTTTATGGGTGGATAGCACCTTACACGCATGCATGTTAACATGTTAA
CTTCACTCCTCAGACCATCAAGTTAGGTAGGTGCATCGGTGCCTTTCTCC
TAAACAGGTGTTAGTAAAAAAAAGGTAAATAACGGTAATTGTACCCCCCC
GCTTCCCCCCCCAAAAAAGGCCCATAACCCGGGAGGTAAGCTTAATCGTG
AGGAAGCTTCTACCCAGTCGTGTAATCAGAGTGCTGACATCGTTTCTCCC
CAAAATTTCGAGCTGATTCTCTTCGGTGTGCTTGTTATCCTGTTGGCAGA
GAAACAATGACTGCCAACGCCCTTCGATCATTGTACCAGAGGAGACAACT
GCTTTCCCTTTGTCCGCTTACAGTCATATTCGTAGCTGGCTTATGCTCTT
GGGAGCCCCCTCAAGCTCTCTCATCTCCACCATGCCTTACCACCGCATAA
GGGGCAATAGTTCGGGAGCACAGGCAGCATCCAGCATAGACAGCTGCCAG
CCAAGCTGCAGCAACACACACGGACAATACTCATGGTAAATGCACGGGAA
GGAAAGCGTGTGGCACAAGGCAAGGGCAAGAAGGGAGTCTAAAAGGCTGC
AACCATGAAGAAGACAGGGGTCGCTACCAAGCGCAAGGACCTGAAGCGTA
ATCGCACTCTTTCTGACGAGGCAGCCTATACCGAATCCGCCGCCAAGGTC
TCGGAATTGGTCACGCTGGCGCACAATTTTGCTTTCTTGAAGAGCGGCCG
AGCAGTTTACTGCGCAGTTCCTGAGATCAAGTGCCTCGTCACACTGGGAA
ACGAGATGGTGGATGCCGGGGTGATGACGGCGGGGCAATTCTATAAAACC
TGCGTGTCCTCGTCCTACTTTTCCCTCTACCGAAAGACAGATCGCTTTAC
TTATTTGCAGAGGCTCGCGGTACGAAAACAATTGAATAGCAAGTTTCTCG
ACGCGTGGAAGAGTGAGCAGCCCCTCAATAAAGCGGGAGAGGACTACGCC
CAAAAAGTGGGGCAAGAGGTGCGTGAGAAGGAAGATGAAGAGGAGGATGA
TATGTTTGAGAATTTAGCCGAGGCCACGGCTCGCGTTGCCTGGGGGAAGG
GGGCTTTGTTTAAGATGCTAAAGGGGTACGCTATTCATCGTGCGAGCAAC
AAGGGCTGCCCCTTTATCAAAGGTTGGATCAAGGCACAAGCCTCCATGGT
GGTCACCACCGTGTTGAAAGGTGAATTCAGCGCTGTAGACGTAAGGAGAT
GGGTGGCAAAGGCGAAGGGGAAGGACTCAAGCTTTTATTTTGTGTCTCAT
TTTGTGTCTTATGACGAGGAGATTGTGGGCTTTCTCTATCACGAGAAGGC
GGACTTCCAGGGCAAATATGACGTGGATCTGATCAGAGCGTATGGTGTTG
TCGAACGTCTGAAGAATAAGGGAGTCGGTCTGGCGTTAATTTATTCTTGC
TTCAGTGATCTACCCAGGTCCCCTTACATTTGTGCTGATATTGACAGTGC
ACACCTAGAGTCCCTTGCTTGTATCCGTCAGGCGGCACCGGTGTTTGGAC
GGAAGTTGTTGGCTCTAGGGCGGGTGGTGATGAGACCCAGTCAGGAATGC
ATCCTTGAGTGGAACCGGCACCCGCGGGCCGGGACTTTGGAAAGCAAGGA
GTGGTGCTGCATGCTCAAGGGTGTCCCTGACTTTGAAGAGCGCGAGAATG
AAGAACACTGGCCGGCCTTGGAGGAGGAGCATTTGCCTGCTACGGAAAGG
GATGACAAGCAAGGAGGAGGGAAGCCATAAGAGAAGAATATGGTGGTAAA
GCAGAAGATCAAAAATGTGAGGATAATGAAGGCGAAAGAGAAAAATATGG
CGATAAAGCAGAAGAAAGTTTCGAGGAATCTCCGTGGGCGTCCACACAAG
AGCACTACATTCCTCACGAGGAGCACCCCAAAAAAGAAGAAAGAGGATTA
ACTAAAGAGATTATAAATAAATGGAAGACAAGGAAAAGCGAGACAAAGAA
CAGCGTGGGCAAGGAGAAGGAGAGCTAGAGCGAGGTCACGGGTGCCAAGA
AAATTAAGGTTGGAAAGTGAGATTTGTCCGTGGGAAAAAGGACAGGTGAC
AAATATCACTCGTGTCCTGTCTTACATGTGCTGTGTGTTGAGAGAAGAAA
AGGTGCGCCAAAGAGCAAA

protein sequence of NO28G00650.1

>NO28G00650.1-protein ID=NO28G00650.1-protein|Name=NO28G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MKKTGVATKRKDLKRNRTLSDEAAYTESAAKVSELVTLAHNFAFLKSGRA
VYCAVPEIKCLVTLGNEMVDAGVMTAGQFYKTCVSSSYFSLYRKTDRFTY
LQRLAVRKQLNSKFLDAWKSEQPLNKAGEDYAQKVGQEVREKEDEEEDDM
FENLAEATARVAWGKGALFKMLKGYAIHRASNKGCPFIKGWIKAQASMVV
TTVLKGEFSAVDVRRWVAKAKGKDSSFYFVSHFVSYDEEIVGFLYHEKAD
FQGKYDVDLIRAYGVVERLKNKGVGLALIYSCFSDLPRSPYICADIDSAH
LESLACIRQAAPVFGRKLLALGRVVMRPSQECILEWNRHPRAGTLESKEW
CCMLKGVPDFEERENEEHWPALEEEHLPATERDDKQGGGKP*

mRNA from alignment at chr28:224797..226965+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00650.1 ID=NO28G00650.1|Name=NO28G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr28:224797..226965+ (Nannochloropsis oceanica)
ATGCTTTATGGGTGGATAGCACCTTACACGCATGCATGTTAACATGTTAA
CTTCACTCCTCAGACCATCAAGTTAGGTAGGTGCATCGGTGCCTTTCTCC
TAAACAGGTGTTAGTAAAAAAAAGGTAAATAACGGTAATTGTACCCCCCC
GCTTCCCCCCCCAAAAAAGGCCCATAACCCGGGAGGTAAGCTTAATCGTG
AGGAAGCTTCTACCCAGTCGTGTAATCAGAGTGCTGACATCGTTTCTCCC
CAAAATTTCGAGCTGATTCTCTTCGGTGTGCTTGTTATCCTGTTGGCAGA
GAAACAATGACTGCCAACGCCCTTCGATCATTGTACCAGAGGAGACAACT
GCTTTCCCTTTGTCCGCTTACAGTCATATTCGTAGCTGGCTTATGCTCTT
GGGAGCCCCCTCAAGCTCTCTCATCTCCACCATGCCTTACCACCGCATAA
GGGGCAATAGTTCGGGAGCACAGGCAGCATCCAGCATAGACAGCTGCCAG
CCAAGCTGCAGCAACACACACGGACAATACTCATGGTAAATGCACGGGAA
GGAAAGCGTGTGGCACAAGGCAAGGGCAAGAAGGGAGTCTAAAAGGCTGC
AACCATGAAGAAGACAGGGGTCGCTACCAAGCGCAAGGACCTGAAGCGTA
ATCGCACTCTTTCTGACGAGGCAGCCTATACCGAATCCGCCGCCAAGGTC
TCGGAATTGGTCACGCTGGCGCACAATTTTGCTTTCTTGAAGAGCGGCCG
AGCAGTTTACTGCGCAGTTCCTGAGATCAAGTGCCTCGTCACACTGGGAA
ACGAGATGGTGGATGCCGGGGTGATGACGGCGGGGCAATTCTATAAAACC
TGCGTGTCCTCGTCCTACTTTTCCCTCTACCGAAAGACAGATCGCTTTAC
TTATTTGCAGAGGCTCGCGGTACGAAAACAATTGAATAGCAAGTTTCTCG
ACGCGTGGAAGAGTGAGCAGCCCCTCAATAAAGCGGGAGAGGACTACGCC
CAAAAAGTGGGGCAAGAGGTGCGTGAGAAGGAAGATGAAGAGGAGGATGA
TATGTTTGAGAATTTAGCCGAGGCCACGGCTCGCGTTGCCTGGGGGAAGG
GGGCTTTGTTTAAGATGCTAAAGGGGTACGCTATTCATCGTGCGAGCAAC
AAGGGCTGCCCCTTTATCAAAGGTTGGATCAAGGCACAAGCCTCCATGGT
GGTCACCACCGTGTTGAAAGGTGAATTCAGCGCTGTAGACGTAAGGAGAT
GGGTGGCAAAGGCGAAGGGGAAGGACTCAAGCTTTTATTTTGTGTCTCAT
TTTGTGTCTTATGACGAGGAGATTGTGGGCTTTCTCTATCACGAGAAGGC
GGACTTCCAGGGCAAATATGACGTGGATCTGATCAGAGCGTATGGTGTTG
TCGAACGTCTGAAGAATAAGGGAGTCGGTCTGGCGTTAATTTATTCTTGC
TTCAGTGATCTACCCAGGTCCCCTTACATTTGTGCTGATATTGACAGTGC
ACACCTAGAGTCCCTTGCTTGTATCCGTCAGGCGGCACCGGTGTTTGGAC
GGAAGTTGTTGGCTCTAGGGCGGGTGGTGATGAGACCCAGTCAGGAATGC
ATCCTTGAGTGGAACCGGCACCCGCGGGCCGGGACTTTGGAAAGCAAGGA
GTGGTGCTGCATGCTCAAGGGTGTCCCTGACTTTGAAGAGCGCGAGAATG
AAGAACACTGGCCGGCCTTGGAGGAGGAGCATTTGCCTGCTACGGAAAGG
GATGACAAGCAAGGAGGAGGGAAGCCATAAGAGAAGAATATGGTGGTAAA
GCAGAAGATCAAAAATGTGAGGATAATGAAGGCGAAAGAGAAAAATATGG
CGATAAAGCAGAAGAAAGTTTCGAGGAATCTCCGTGGGCGTCCACACAAG
AGCACTACATTCCTCACGAGGAGCACCCCAAAAAAGAAGAAAGAGGATTA
ACTAAAGAGATTATAAATAAATGGAAGACAAGGAAAAGCGAGACAAAGAA
CAGCGTGGGCAAGGAGAAGGAGAGCTAGAGCGAGGTCACGGGTGCCAAGA
AAATTAAGGTTGGAAAGTGAGATTTGTCCGTGGGAAAAAGGACAGGTGAC
AAATATCACTCGTGTCCTGTCTTACATGTGCTGTGTGTTGAGAGAAGAAA
AGGTGCGCCAAAGAGCAAA

Coding sequence (CDS) from alignment at chr28:224797..226965+

>NO28G00650.1 ID=NO28G00650.1|Name=NO28G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr28:224797..226965+ (Nannochloropsis oceanica)
ATGAAGAAGACAGGGGTCGCTACCAAGCGCAAGGACCTGAAGCGTAATCG
CACTCTTTCTGACGAGGCAGCCTATACCGAATCCGCCGCCAAGGTCTCGG
AATTGGTCACGCTGGCGCACAATTTTGCTTTCTTGAAGAGCGGCCGAGCA
GTTTACTGCGCAGTTCCTGAGATCAAGTGCCTCGTCACACTGGGAAACGA
GATGGTGGATGCCGGGGTGATGACGGCGGGGCAATTCTATAAAACCTGCG
TGTCCTCGTCCTACTTTTCCCTCTACCGAAAGACAGATCGCTTTACTTAT
TTGCAGAGGCTCGCGGTACGAAAACAATTGAATAGCAAGTTTCTCGACGC
GTGGAAGAGTGAGCAGCCCCTCAATAAAGCGGGAGAGGACTACGCCCAAA
AAGTGGGGCAAGAGGTGCGTGAGAAGGAAGATGAAGAGGAGGATGATATG
TTTGAGAATTTAGCCGAGGCCACGGCTCGCGTTGCCTGGGGGAAGGGGGC
TTTGTTTAAGATGCTAAAGGGGTACGCTATTCATCGTGCGAGCAACAAGG
GCTGCCCCTTTATCAAAGGTTGGATCAAGGCACAAGCCTCCATGGTGGTC
ACCACCGTGTTGAAAGGTGAATTCAGCGCTGTAGACGTAAGGAGATGGGT
GGCAAAGGCGAAGGGGAAGGACTCAAGCTTTTATTTTGTGTCTCATTTTG
TGTCTTATGACGAGGAGATTGTGGGCTTTCTCTATCACGAGAAGGCGGAC
TTCCAGGGCAAATATGACGTGGATCTGATCAGAGCGTATGGTGTTGTCGA
ACGTCTGAAGAATAAGGGAGTCGGTCTGGCGTTAATTTATTCTTGCTTCA
GTGATCTACCCAGGTCCCCTTACATTTGTGCTGATATTGACAGTGCACAC
CTAGAGTCCCTTGCTTGTATCCGTCAGGCGGCACCGGTGTTTGGACGGAA
GTTGTTGGCTCTAGGGCGGGTGGTGATGAGACCCAGTCAGGAATGCATCC
TTGAGTGGAACCGGCACCCGCGGGCCGGGACTTTGGAAAGCAAGGAGTGG
TGCTGCATGCTCAAGGGTGTCCCTGACTTTGAAGAGCGCGAGAATGAAGA
ACACTGGCCGGCCTTGGAGGAGGAGCATTTGCCTGCTACGGAAAGGGATG
ACAAGCAAGGAGGAGGGAAGCCATAA

Synonyms

Publications