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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:116427..119588 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00310.1 vs.
Match: CBN75077.1 (Ornithine cyclodeaminase [Ectocarpus siliculosus]) HSP 1 Score: 410.2 bits (1053), Expect = 6.500e-111 Identity = 209/332 (62.95%), Postives = 245/332 (73.80%), Query Frame = 0
Query: 27 TAVRAMATMPTPKFFDYATVKKTLNVGQAFKAVEEAFAMLADGKVDVPQPMHIGIHETPTAGPGDCHIKGGYIEGKTTFTVKLATVSFYKNMAKGLPPGAGIFVVCDATNGAPVGVFQENRFMTDLRTGAAGGIAVKYFGSSPKHTSVGFVGTGAIAKVMAQGAAVAHKFKQGYAYGLDPAMSASFAKEIEAELGYPVKVCATAEEAVRASDVLFTQTPGSKPVLELSWLKPHATIIASGSDQPTKNEIPPEVQAKSKFICDLVRQCSRLGELRTGIASGLVKESDVHAEIGEVVSGKKKGREGDELILVDLTGTGAQDAAIGQVAWDILSK 359
TA RA AT+P P+ FDY TV L A +AVE AF MLA GKVDVP PMHIGI E+ AGPGDCHIKGGYI G +T+TVKLA VSFYKN+ KGLP G+GIFVVCDATNGAP+ +FQENRF+TDLRTGAAG ++VK+F ++ H VGFVG G IA MA+G+ H+F +G+AYGLD + +A EIEAELGY V+EL WL+PHATIIASGSDQPTKNEIP EVQ SK +CDLVRQC ++GELR+ I +G++ DV+AEIG+VV+G K GR G+ELILVDLTGTGAQDAAIGQVAWDILSK
Sbjct: 43 TACRAFATVPGPRLFDYDTVTSVLKQSDAVEAVEAAFGMLAKGKVDVPIPMHIGIDESEKAGPGDCHIKGGYISGTSTWTVKLANVSFYKNVEKGLPAGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKHF-AARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVVKTKEWADEIEAELGY--------------------------KVVELDWLRPHATIIASGSDQPTKNEIPAEVQKASKMVCDLVRQCEQVGELRSAIKAGVMTRDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSK 347
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00310.1 ID=NO28G00310.1|Name=NO28G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
CTGAAACAGGCTCGAACAGTGCACGCGCGCTGCACACAAATACTATTTCT
CCCTCTCCAACTTTGTCAACACTATGAGCGCCGCCGTCCGCCGCCTCGCC
CTCCTCCAGCCTCGCACCCGCTTGTCTCCTTTGGCTGCCACTACTAGCAG
CACGGCTGTGCGCGCTATGGCCACCATGCCTACGCCCAAGTTTTTCGACT
ACGCCACGGTCAAGAAGACTTTGAATGTGGGCCAGGCCTTCAAGGCCGTG
GAAGAGGCGTTTGCTATGCTGGCTGATGGGAAGGTGGACGTGCCGCAGCC
AATGCACATTGGCATCCATGAGACACCCACAGCGGGACCGGGCGACTGCC
ACATTAAGGGAGGGTACATTGAGGGCAAAACAACGTTTACAGTGAAGCTG
GCCACGGTCTCCTTCTACAAGAACATGGCCAAAGGCCTTCCTCCCGGAGC
GGGTATCTTTGTCGTCTGTGACGCCACCAATGGCGCGCCCGTCGGCGTTT
TCCAAGAAAACCGTTTCATGACGGACCTCCGCACCGGTGCCGCTGGTGGC
ATTGCCGTTAAATATTTCGGATCCTCGCCGAAGCACACTTCCGTTGGCTT
CGTGGGCACTGGAGCCATTGCCAAAGTAATGGCACAGGGCGCCGCCGTGG
CCCACAAATTTAAGCAAGGATATGCATATGGCCTGGACCCTGCCATGTCC
GCCTCCTTTGCTAAGGAAATCGAAGCCGAGCTCGGCTACCCCGTCAAGGT
CTGCGCTACGGCCGAGGAGGCCGTTCGTGCGTCCGACGTTCTATTCACGC
AAACTCCGGGTAGCAAGCCAGTGCTCGAGCTCTCATGGCTCAAGCCTCAC
GCCACCATTATCGCCTCTGGCAGCGACCAGCCCACCAAAAACGAGATCCC
TCCCGAGGTCCAGGCCAAGAGCAAATTTATTTGCGATCTGGTCCGTCAGT
GCTCCCGCTTGGGCGAGCTCCGCACAGGCATTGCCAGCGGGCTTGTGAAA
GAGAGTGACGTCCACGCGGAGATCGGGGAGGTTGTGAGCGGGAAAAAAAA
GGGTAGGGAAGGCGATGAACTCATCCTCGTCGATTTGACGGGCACGGGCG
CACAGGACGCGGCCATCGGGCAGGTGGCATGGGACATTCTGAGCAAGAAG
TAGTGAAGAAATAAACAAGATATGAAGAGGGGGAAGGAGGGGTGGGTTTA
ATCAAGTTAAAAAAAGATTTAAAAACAAAAGGTGTGCGAACACCAGAAGG
GAGGGACAAAGACGAGTCCACGGTCTTGGAAATGCGGGGGAAGGGAAGAA
GGAGGGAAGGTGTCTTAGAGCATACGGGTGGGCCGGTTGGTGAAGGTGTT
TGTTCTAAATGTCCATTGTTTTTCAGGGTCATATATGCTCCTCAACGACA
AGAGATCTTCTCAAATCAGGCCTATCGACAGCATTGTGGGCCCACGGGAT
TGAGCCATGCTCTATTTGTGTCATAGAGAGCAAAGGCATGTGAGAAGGGG
ATGGCTGAGGAGTGTGGTGTAGATGGCTGTGATGTAGAAGTAGAGAAAGA
GGAAGAAGGGGAAGAAGAAGAGAAAGAAAATTAGGGAGAGGAAGAGAAAG
AAGAACAGGGAGGGGAAGAGGAAAAGAAAGAAAATACAAAAGAAGATGAT
AGTGTTAAAGACTGG back to topprotein sequence of NO28G00310.1 >NO28G00310.1-protein ID=NO28G00310.1-protein|Name=NO28G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MSAAVRRLALLQPRTRLSPLAATTSSTAVRAMATMPTPKFFDYATVKKTL
NVGQAFKAVEEAFAMLADGKVDVPQPMHIGIHETPTAGPGDCHIKGGYIE
GKTTFTVKLATVSFYKNMAKGLPPGAGIFVVCDATNGAPVGVFQENRFMT
DLRTGAAGGIAVKYFGSSPKHTSVGFVGTGAIAKVMAQGAAVAHKFKQGY
AYGLDPAMSASFAKEIEAELGYPVKVCATAEEAVRASDVLFTQTPGSKPV
LELSWLKPHATIIASGSDQPTKNEIPPEVQAKSKFICDLVRQCSRLGELR
TGIASGLVKESDVHAEIGEVVSGKKKGREGDELILVDLTGTGAQDAAIGQ
VAWDILSKK* back to topmRNA from alignment at chr28:116427..119588+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00310.1 ID=NO28G00310.1|Name=NO28G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3162bp|location=Sequence derived from alignment at chr28:116427..119588+ (Nannochloropsis oceanica)
CTGAAACAGGCTCGAACAGTGCACGCGCGCTGCACACAAATACTATTTCT
CCCTCTCCAACTTTGTCAACACTATGAGCGCCGCCGTCCGCCGCCTCGCC
CTCCTCCAGCCTCGCACCCGCTTGTCTCCTTTGGCTGCCACTACTAGCAG
CACGGCTGTGCGCGCTATGGCCACCATGCCTACGCCCAAGTTTTTCGACT
ACGCCACGGTCAAGAAGGTAGGTTCCGAGGAGGAAGGGAAGGGGAAAGGG
AAGGACGAAAAGAGGAGACAGTCGGGTAAAGCAAGGCATCCGCATTGAAC
AGATCAATACACATACATGTAATTTATCTGTGTATGCCGTGATCCTCTTC
CTTCGCCTACTGAAATTTCTTCACTTATGTACTCACATTTCCCCCTACCT
CCCTCCATCCCGCCCTCAACTCCCAGACTTTGAATGTGGGCCAGGCCTTC
AAGGCCGTGGAAGAGGCGTTTGCTATGCTGGCTGATGGGAAGGTGGACGT
GCCGCAGGTAGGACATAAGAAAAATAAGCACGGTTGGGAAGTAGGGAGAG
AGAAAGAGTTCTGGCGTTGTCTTTGACAATAGAAACTCGGTATGTCACAC
ATACACTTCCCCCTTACTTCCCTCCCTCCCTCTCCAGCCAATGCACATTG
GCATCCATGAGACACCCACAGCGGGACCGGGCGACTGCCACATTAAGGTA
AGCCTCGAAGGTGTAAAGAACCCTCTGTCCCTCTCTCCCCCCGTCTGCCT
CCGTCCCTCTCCCCCCCGGCCTCCCTCCCGCCCTTATCCCTTCCCCCCCC
TCCCCCCTCCCTCCTTCCAGGGAGGGTACATTGAGGGCAAAACAACGTTT
ACAGTGAAGCTGGCCACGGTCTCCTTCTACAAGAACATGGCCAAAGGCCT
TCCTCCCGGAGCGGGTATCTTTGTCGTCTGTGACGCCACCAATGGCGCGC
CCGTCGGTAAGCAATCCCTCCCTCCCTCCCTCCCTCCCTTTCTCGCTCAT
TCTCCGTAAGGCAAGTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTATCTTCACGTCCTTGTCATCGTGTACATATTCTCGTGCCTGCCTTTTT
GATCCTCCCTCCCTCCCTTCCTTCCTCCCCCCCTCCCTCCACCCTTCCCT
TAGGCGTTTTCCAAGAAAACCGTTTCATGACGGACCTCCGCACCGGTGCC
GCTGGTGGCATTGCCGTTAAATATTTCGGATCCTCGCCGAAGCACACTTC
CGTTGGCTTCGTGGGCACTGGAGCCATTGCCAAAGTAATGGCACAGGTAA
AGCCTCTCTCCCTCCCTCCCTCCCTCCCCTCCCTCTCCCCCTCCCTCCCC
CTTTCCCGATGTTGCCATCTTACTGACACAAAAAGCACCCGTCCTTCCCT
CCCTCCCTCCCTCTCTCTCTTCCTCCAGGGCGCCGCCGTGGCCCACAAAT
TTAAGCAAGGATATGCATATGGCCTGGACCCTGCCATGTCCGCCTCCTTT
GCTAAGGAAATCGAAGCCGAGCTCGGCTACCCCGTCAAGGTACACCCTCT
TTCCCCCCCCTCCCTCCCCTCTCTCCCTCCTCTCCCTTCCCGGCCTGTGG
TCTCGACACCACCACAGGTCTGCGCCACGGCATGCATTTTTTCCTCCCCC
CCATATGTCTGCGCGTGTGACGATTCGTCCCCACTCACCGATTCCCCCTC
CCTTCCTTCCCTCCCTCCCTTCCTTCCCTCCCCATCACAGGTCTGCGCTA
CGGCCGAGGAGGCCGTTCGTGCGTCCGACGTTCTATTCACGCAAACTCCG
GGTAGCAAGCCAGTGCTCGAGCTCTCATGGCTCAAGCCTCACGCCACCAT
TATCGCCTCTGGCAGCGACCAGCCCACCAAAAACGAGATCCCTCCCGAGG
TACGTCCTCCCTTCCTCCCTTCCTCTCTCCCTCCCTCCCGTCCTCCCACC
TCTTAGAAAGACCAGCATTCCCTGACAATTCAATGAACTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCCTCAGGTCCAGGC
CAAGAGCAAATTTATTTGCGATCTGGTCCGTCAGTGCTCCCGCTTGGGCG
AGCTCCGCACAGGTAGGGATGGAGGGAGGGAGGAAGGAAGGAAGGGAGGG
AAGGAAGGATGGAAGAAAGGGAGGGAAGGAAGGATGGAAGGAAGAGAGGG
AGGTAGGGAAGGAGGCAGGGAGGGAGGGAGGGAGTGAGGGAGGGTGATAC
CAATCTCTACAGGAGAACTCCTACACTGTCCCCTCCCTCCCTCCCTCCAT
CCCTCCTCCAGGCATTGCCAGCGGGCTTGTGAAAGAGAGTGACGTCCACG
CGGAGATCGGGGAGGTTGTGAGCGGGAAAAAAAAGGGTAGGGAAGGCGAT
GAACTCATCCTCGTCGATTTGACGGGCACGGGCGCACAGGTAGGGAGGGA
GGGCTGGAGGGAGGGGAGGGGGTATGGAGGGAGGGAGGGGAAAATAGTCA
CTCAAACACAAGACATCCAATCTTTGGATTAACTATATTTCCTTTTGAAC
GCGGCCCTCCCTCCCTCCTTCCCTCCCTCTCTTCCTCTTTCCCCCCCTCT
AGGACGCGGCCATCGGGCAGGTGGCATGGGACATTCTGAGCAAGAAGTAG
TGAAGAAATAAACAAGATATGAAGAGGGGGAAGGAGGGGTGGGTTTAATC
AAGTTAAAAAAAGATTTAAAAACAAAAGGTGTGCGAACACCAGAAGGGAG
GGACAAAGACGAGTCCACGGTCTTGGAAATGCGGGGGAAGGGAAGAAGGA
GGGAAGGTGTCTTAGAGCATACGGGTGGGCCGGTTGGTGAAGGTGTTTGT
TCTAAATGTCCATTGTTTTTCAGGGTCATATATGCTCCTCAACGACAAGA
GATCTTCTCAAATCAGGCCTATCGACAGCATTGTGGGCCCACGGGATTGA
GCCATGCTCTATTTGTGTCATAGAGAGCAAAGGCATGTGAGAAGGGGATG
GCTGAGGAGTGTGGTGTAGATGGCTGTGATGTAGAAGTAGAGAAAGAGGA
AGAAGGGGAAGAAGAAGAGAAAGAAAATTAGGGAGAGGAAGAGAAAGAAG
AACAGGGAGGGGAAGAGGAAAAGAAAGAAAATACAAAAGAAGATGATAGT
GTTAAAGACTGG back to topCoding sequence (CDS) from alignment at chr28:116427..119588+ >NO28G00310.1 ID=NO28G00310.1|Name=NO28G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr28:116427..119588+ (Nannochloropsis oceanica)
ATGAGCGCCGCCGTCCGCCGCCTCGCCCTCCTCCAGCCTCGCACCCGCTT
GTCTCCTTTGGCTGCCACTACTAGCAGCACGGCTGTGCGCGCTATGGCCA
CCATGCCTACGCCCAAGTTTTTCGACTACGCCACGGTCAAGAAGACTTTG
AATGTGGGCCAGGCCTTCAAGGCCGTGGAAGAGGCGTTTGCTATGCTGGC
TGATGGGAAGGTGGACGTGCCGCAGCCAATGCACATTGGCATCCATGAGA
CACCCACAGCGGGACCGGGCGACTGCCACATTAAGGGAGGGTACATTGAG
GGCAAAACAACGTTTACAGTGAAGCTGGCCACGGTCTCCTTCTACAAGAA
CATGGCCAAAGGCCTTCCTCCCGGAGCGGGTATCTTTGTCGTCTGTGACG
CCACCAATGGCGCGCCCGTCGGCGTTTTCCAAGAAAACCGTTTCATGACG
GACCTCCGCACCGGTGCCGCTGGTGGCATTGCCGTTAAATATTTCGGATC
CTCGCCGAAGCACACTTCCGTTGGCTTCGTGGGCACTGGAGCCATTGCCA
AAGTAATGGCACAGGGCGCCGCCGTGGCCCACAAATTTAAGCAAGGATAT
GCATATGGCCTGGACCCTGCCATGTCCGCCTCCTTTGCTAAGGAAATCGA
AGCCGAGCTCGGCTACCCCGTCAAGGTCTGCGCTACGGCCGAGGAGGCCG
TTCGTGCGTCCGACGTTCTATTCACGCAAACTCCGGGTAGCAAGCCAGTG
CTCGAGCTCTCATGGCTCAAGCCTCACGCCACCATTATCGCCTCTGGCAG
CGACCAGCCCACCAAAAACGAGATCCCTCCCGAGGTCCAGGCCAAGAGCA
AATTTATTTGCGATCTGGTCCGTCAGTGCTCCCGCTTGGGCGAGCTCCGC
ACAGGCATTGCCAGCGGGCTTGTGAAAGAGAGTGACGTCCACGCGGAGAT
CGGGGAGGTTGTGAGCGGGAAAAAAAAGGGTAGGGAAGGCGATGAACTCA
TCCTCGTCGATTTGACGGGCACGGGCGCACAGGACGCGGCCATCGGGCAG
GTGGCATGGGACATTCTGAGCAAGAAGTAG back to top
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