NO28G00270.1, NO28G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00270.1
Unique NameNO28G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr28:104090..105704 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:104090..105704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00270.1 vs.
Match: EWM20292.1 (conserved unknown protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 163.7 bits (413), Expect = 7.900e-37
Identity = 78/116 (67.24%), Postives = 90/116 (77.59%), Query Frame = 0 
Query:  151 KHGTCTGLDQYIYMTTTLAGIMNATPRLLSQTAAAAAAAPGSPSPSLPLLTLQNAFGGPTMAVLQCTSHKYLTGVFTCWSKNNETNLPYARIPCPAAVLDEGTCQKGGDVVVPLFK 267
            KHGTCTGLDQY YMTTT+AGI  ATP LL + AA AAAA     PSLPL  L+ AFGGP MAVL C   KYLTGV+TCW+K++ T+ PYAR+ CP AV+ EGTC KGG+VVVP+FK
Sbjct:   23 KHGTCTGLDQYTYMTTTIAGITTATPTLLGEMAATAAAASPPHPPSLPLPDLETAFGGPGMAVLMCNGKKYLTGVYTCWTKDSGTHKPYARMQCPPAVVAEGTCPKGGEVVVPIFK 138
The following BLAST results are available for this feature:
BLAST of NO28G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20292.17.900e-3767.24conserved unknown protein, partial [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00270NO28G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00270.1NO28G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00270.1.cds1NO28G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00270.1.cds2NO28G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00270.1.cds3NO28G00270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00270.1.cds4NO28G00270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00270.1.cds5NO28G00270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00270.1.cds6NO28G00270.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00270.1 ID=NO28G00270.1|Name=NO28G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
ATGCCTTCATCGTCAGCGTTAGCAAGGGGCAGCAGTGGCAGTCACGTACA
AAAAGCCCGCGTCCTCCCACTCCTTTTGCTGCTCCTATGGACGCCGTTCC
CGGTGGTGGACGGCAAACGACGTGCCTTGCGCGCCGGATTGCGTGCGCCC
AAGGAGTTTGATTTCTATCTACTGGCTACCTTCTGGCCCGCAGAATTGTG
CCACCGGGAGACGACCAACAGCTGTCAATACCCGCAGGATTGGTGGAAGG
TCAACCTGACCGGCCACGGCCTGTGGCCCAACAACAACGACGGTACCTAC
CCTACCAGCTGCGGCGGCGCCCCCTTCAATGACTCCATTCCCGAGGAGAC
GATTGGCATGCCCATTATGACTACGTACTGGCCTAATTTTCAATACGACG
TGGAAGATGGAGAAGAGCTCTACGATAATCTCTGGGAACACGAGTGGAAC
AAACACGGGACTTGCACCGGACTGGACCAATACATCTACATGACCACCAC
CCTTGCAGGCATCATGAATGCCACCCCTCGATTACTCTCTCAAACCGCTG
CTGCTGCTGCTGCTGCTCCTGGAAGTCCCTCTCCCTCCCTCCCCCTCTTG
ACCTTGCAAAATGCGTTTGGTGGTCCCACCATGGCCGTGCTTCAATGCAC
CAGTCATAAATATTTGACAGGTGTATTCACCTGCTGGTCCAAGAACAATG
AGACGAACTTGCCATACGCGCGCATTCCCTGTCCAGCAGCGGTCCTGGAC
GAGGGCACGTGCCAGAAGGGCGGTGATGTGGTAGTACCCTTATTTAAGTG
A
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protein sequence of NO28G00270.1

>NO28G00270.1-protein ID=NO28G00270.1-protein|Name=NO28G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MPSSSALARGSSGSHVQKARVLPLLLLLLWTPFPVVDGKRRALRAGLRAP
KEFDFYLLATFWPAELCHRETTNSCQYPQDWWKVNLTGHGLWPNNNDGTY
PTSCGGAPFNDSIPEETIGMPIMTTYWPNFQYDVEDGEELYDNLWEHEWN
KHGTCTGLDQYIYMTTTLAGIMNATPRLLSQTAAAAAAAPGSPSPSLPLL
TLQNAFGGPTMAVLQCTSHKYLTGVFTCWSKNNETNLPYARIPCPAAVLD
EGTCQKGGDVVVPLFK*
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mRNA from alignment at chr28:104090..105704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00270.1 ID=NO28G00270.1|Name=NO28G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp|location=Sequence derived from alignment at chr28:104090..105704+ (Nannochloropsis oceanica)
ATGCCTTCATCGTCAGCGTTAGCAAGGGGCAGCAGTGGCAGTCACGTACA
AAAAGGTGGGCATGATTTCCCGCCCTTCCTCCCTTTCCTCCCTCCTTCCC
GTCCACCTCTCATACGCACACATCCCACACATATACAGCCCGCGTCCTCC
CACTCCTTTTGCTGCTCCTATGGACGCCGTTCCCGGTGGTGGACGGCAAA
CGACGTGCCTTGCGCGCCGGATTGCGTGCGCCCAAGGAGTTTGATTTCTA
TCTACTGGCTACCTTCGTACGTGTAGAGAGGAGGAAAGGAGGAAGGAAGA
GGAAGATTTAAGACTGAGGGATTGCTATAATTTAAAATGCATCAATCGAA
TAGGATATTGTTATCGTGTATACCGTGGCTTTTTGAGCCATTCCACTCAC
CTTCCCTCTCGCCTTCCCTCCCTCCCTTCCCTCCCTTCCTCCCTTCCTCC
TTCCCCCCCGCCTCCCTCCCTTCCTCTTAGTGGCCCGCAGAATTGTGCCA
CCGGGAGACGACCAACAGCTGTCAATACCCGCAGGATTGGTGGAAGGTGC
GTACTCAAAGAATAGGGAGGAAGGGAAGAGGGGACGGCAGCCATCGATAG
AATGATCGAGCATTTCTGGTGTCTCGAGGCTTACTTCCTTCCTCCCTCTC
TCCCTCCCTCCCTTCCTTCCTCCATCCATTCATCCCTCACAGGTCAACCT
GACCGGCCACGGCCTGTGGCCCAACAACAACGACGGTACCTACCCTACCA
GCTGCGGCGGCGCCCCCTTCAATGACTCCATTCCCGAGGAGACGATTGGC
ATGCCCATTATGACTACGTGTGAGCAAGCCTTCCCTCCCTCCCTCCATCC
CTCCCTCCCTCGCTCTCTCTTCGCGCTCGGTCTAGGCCCACTTTCTGCTC
CTCCAATGATCCTCCTCCCCTCCCTTCCTTCCTCCCTTCCTTCCTCCCTC
TCTCCCTCCCTTCCTTCCTCCCTTCTTTCCTCCCTCCCTCCCTCCAGACT
GGCCTAATTTTCAATACGACGTGGAAGATGGAGAAGAGCTCTACGATAAT
CTCTGGGAACACGAGTGGTATGTATGTCCTCTCCCTTTCCCCCTTCCTTC
CCTCCCTCCCTCCCTTCTTCCTTCCCCCTCGTCCCTTTCCCTCACAGGAG
CTTTTTGGATTGACTGGTTGATCGAGAGATTGATCCTATTGTGAGACCGA
TGTACGATATCTACACATAGCCTTTTCCCTCCCTCCCACCCTCCTTCCCC
TCCCTCGTAGGAACAAACACGGGACTTGCACCGGACTGGACCAATACATC
TACATGACCACCACCCTTGCAGGCATCATGAATGCCACCCCTCGATTACT
CTCTCAAACCGCTGCTGCTGCTGCTGCTGCTCCTGGAAGTCCCTCTCCCT
CCCTCCCCCTCTTGACCTTGCAAAATGCGTTTGGTGGTCCCACCATGGCC
GTGCTTCAATGCACCAGTCATAAATATTTGACAGGTGTATTCACCTGCTG
GTCCAAGAACAATGAGACGAACTTGCCATACGCGCGCATTCCCTGTCCAG
CAGCGGTCCTGGACGAGGGCACGTGCCAGAAGGGCGGTGATGTGGTAGTA
CCCTTATTTAAGTGA
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Coding sequence (CDS) from alignment at chr28:104090..105704+

>NO28G00270.1 ID=NO28G00270.1|Name=NO28G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr28:104090..105704+ (Nannochloropsis oceanica)
ATGCCTTCATCGTCAGCGTTAGCAAGGGGCAGCAGTGGCAGTCACGTACA
AAAAGCCCGCGTCCTCCCACTCCTTTTGCTGCTCCTATGGACGCCGTTCC
CGGTGGTGGACGGCAAACGACGTGCCTTGCGCGCCGGATTGCGTGCGCCC
AAGGAGTTTGATTTCTATCTACTGGCTACCTTCTGGCCCGCAGAATTGTG
CCACCGGGAGACGACCAACAGCTGTCAATACCCGCAGGATTGGTGGAAGG
TCAACCTGACCGGCCACGGCCTGTGGCCCAACAACAACGACGGTACCTAC
CCTACCAGCTGCGGCGGCGCCCCCTTCAATGACTCCATTCCCGAGGAGAC
GATTGGCATGCCCATTATGACTACGTACTGGCCTAATTTTCAATACGACG
TGGAAGATGGAGAAGAGCTCTACGATAATCTCTGGGAACACGAGTGGAAC
AAACACGGGACTTGCACCGGACTGGACCAATACATCTACATGACCACCAC
CCTTGCAGGCATCATGAATGCCACCCCTCGATTACTCTCTCAAACCGCTG
CTGCTGCTGCTGCTGCTCCTGGAAGTCCCTCTCCCTCCCTCCCCCTCTTG
ACCTTGCAAAATGCGTTTGGTGGTCCCACCATGGCCGTGCTTCAATGCAC
CAGTCATAAATATTTGACAGGTGTATTCACCTGCTGGTCCAAGAACAATG
AGACGAACTTGCCATACGCGCGCATTCCCTGTCCAGCAGCGGTCCTGGAC
GAGGGCACGTGCCAGAAGGGCGGTGATGTGGTAGTACCCTTATTTAAGTG
A
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Synonyms
Publications