NO28G00220.1, NO28G00220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00220.1
Unique Name	NO28G00220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2468
Alignment location	chr28:84035..86502 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:84035..86502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO28G00220.1 vs.

BLAST of NO28G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00220	NO28G00220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00220.1	NO28G00220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00220.1.cds1	NO28G00220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:84035..86502+
coding sequence from alignment at chr28:84035..86502+

mRNA sequence

>NO28G00220.1 ID=NO28G00220.1|Name=NO28G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp
TCCACTCACGCCTCGCTTCCCTCTTTTGACCCCCACGTCATCACAGCAAG
CTGCGTCCACCAGCTCCTCTTCCACGACGAGCAACAAAGCAAACCAGAAG
AATACAATGACAACAACGACAACAACAACTACAACTACTATTTACACTGC
TTCTAATACTACAACGATGGCGTTCGGGCCCGCAGCCACAGCAGCAGCTG
TGAAGGCAGGAGGTGCAGAATGGGCTGGTCTGGGCGACAGCCGCAGCCGC
AGCGGAGGCGAGGTCAAGACCCTTACCGATGGCAACAGTAACAACAACAG
CAACAACAGCAACAACAGTTACACCAGCAACAGCAACAACAAGAAGAAGG
GGAAGGGCTGCAAGGGCCCTCGCCCGCCTACCCCTGAGAGGGTTCGTGTA
CAGATGGAGGCGGCCCTCAGCCTGCCCAAGCCCAAGAGCAAGAGGGCCAT
TAACAAAAATAAAAGGCGCATCGCCAACAGGGCGGCCAAGAAGGCGCTGG
GCGAAGGCAGGAATGAGGGAGGATTGAAGTCCGCAGAGGTCATCCCTTCG
TTGGTGTTAGGGGAGGAAGGGGGGGAAGGAGGGGGGGCGGGGGAGGGGCA
ATGGGGCAGCAGCGAGGATGACACCTCGAGCACCACAACCACCACCACTA
CCACCACCATCATCACTTCCACGAGCAGCAGCAGCAACGGCAGCGACCTC
AGCGAGAGCAGTAGTGGCAGCAACACCTGTGACACCGGCAAGAGCACCAA
GAGCAGTGGCAGCAGCACTTGCACGGCCCTCGCGCTGTATAAGCCACTGG
ATGTCTTCGTTCCCAGGACCACAATCACTACCTCCACCACCACCACCAAA
CCCTCCACTCTTCTCATTAAGAGCAAGGGCTCGAGCATGCCCTGCATCCT
CTCCGAGAACCTCTCCGTCTCCTCGAAGAAGTTCCGCCGTGCTGCCTCAG
TCCCCGACCATGACTCCCTCCCTGCCTGGCCCGCCTACGCACGCGGACAT
TGCACCGTGCTGGCCTTTCCCCTGCCCTCCCTCGTTCCGACCATCCTCCC
TCCCACTGGGGCAGAGATGAAGAAGGAGGAACAGCAGCAGCTCTCGCTGC
CGGTCGCAGCGACGGGAGCAGGGCACATTTCGTTTGAGGCGTCTGCTGCT
ATTGCTGCTGATAATTATACTGGTAGCGCTGCCGATACTACTACTGCTGC
TGCTGCTACTATTGTTGCTGCTGCAACTACTACAACTACTACTTTTATTG
CTAAATGTACTACTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTTTGGAG
ACGGAAAATTTCCACCCAATTCACACCATTTGGGAGGCTTTCCCTTTCCT
CCTCCACCTCAACATCTCCGCCTCCTCCTCTTTCACCTCCTCCCCCTCCT
CCACCTCCGCCTTCGCCTCCTCTTTTTCGAAGCTGGATGTGCCTGGCTTG
AGCAACCGCCTCGTCCTCCATCATTCTGTCCAGCCCCTGGATTTGCTGAT
GGGGACGGAGGAAGGGAGGGAGGGAGGGATGGAGGAAGGCACGGAGGGAG
GGATGGAGCAAGGGATGGAGGGAGGGAACGAGGGAGGAATGGAAGAAGGG
GAAGAGGAAATAGAGGAGCGATTTTCGCGCTTAGGATCACCACTTTTCAT
GGAAGAGGAGGACGTGGAGGAGTGGCATGACCACCGTCCCTCCCTCCCTC
CCTCGTTCCTGCAGTCGATCTCTACCTCCATTCGCGCCATTTTGGGGTCA
GCTATGCGGCAGGTGAAGAGGACGTGGGAATGGATCAGGAAGAAAGGAGA
GGCGGGAACGAAGGCAATGCAAGCGATGAGCTGGGTGGCTGGGGGGGGTG
CGAAAAATACGGTCGCTTACGCATTGTCGTAAAAAGAGAGTGGGAGGAGA
GGGAGCGGGGGAAGGGAGAAGGGAAGGGAGAAGGGAAGGAGAGAAAGGGA
GGAAAGGGAGAATGAAAGGAGAAGGAAATAGGGAAGGGAGAGCGGGAGGA
GAGGAAGGGAGGGAGGGAGGAAGGGAGGAACAGTTTCATTATTTATCTAA
CCACGAGGTTTGCGCGAAGCAAGACCCGAAAGAGATTGGAGATAGCGACG
AGAGACAGAAGAAGAGTGTCGACGACAGGAAAGAAAACAAGTTCGAAAGA
AAGACAAAGAGACAGAAAGAGAGGCAGAGAGGGAGAAGACGAAAGGAAAG
AAAACAACAATCATAAAAAAGAAAAAAAGGCAAGTAGATGAAGGTGGAGA
ACGAGAAGATGGAGAACGTGCGAGACGAGAGAGAGGCAGACCAGATGGGA
CTAGGGGAGGGGGTCCACCTGTGAGACACAGAGATACAGAGATACAGAGA
CACAGAGATACAGAGATACAGAGACACAGAGATACAGAGACACAGAGACA
GAGACACAGAGACACAGAGATACAGAGACACAGAGATACAGAGACACAGA
GACACAGAGACACAGAGA

protein sequence of NO28G00220.1

>NO28G00220.1-protein ID=NO28G00220.1-protein|Name=NO28G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MTTTTTTTTTTIYTASNTTTMAFGPAATAAAVKAGGAEWAGLGDSRSRSG
GEVKTLTDGNSNNNSNNSNNSYTSNSNNKKKGKGCKGPRPPTPERVRVQM
EAALSLPKPKSKRAINKNKRRIANRAAKKALGEGRNEGGLKSAEVIPSLV
LGEEGGEGGGAGEGQWGSSEDDTSSTTTTTTTTTIITSTSSSSNGSDLSE
SSSGSNTCDTGKSTKSSGSSTCTALALYKPLDVFVPRTTITTSTTTTKPS
TLLIKSKGSSMPCILSENLSVSSKKFRRAASVPDHDSLPAWPAYARGHCT
VLAFPLPSLVPTILPPTGAEMKKEEQQQLSLPVAATGAGHISFEASAAIA
ADNYTGSAADTTTAAAATIVAAATTTTTTFIAKCTTAAAAVAAAAALETE
NFHPIHTIWEAFPFLLHLNISASSSFTSSPSSTSAFASSFSKLDVPGLSN
RLVLHHSVQPLDLLMGTEEGREGGMEEGTEGGMEQGMEGGNEGGMEEGEE
EIEERFSRLGSPLFMEEEDVEEWHDHRPSLPPSFLQSISTSIRAILGSAM
RQVKRTWEWIRKKGEAGTKAMQAMSWVAGGGAKNTVAYALS*

mRNA from alignment at chr28:84035..86502+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00220.1 ID=NO28G00220.1|Name=NO28G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr28:84035..86502+ (Nannochloropsis oceanica)
TCCACTCACGCCTCGCTTCCCTCTTTTGACCCCCACGTCATCACAGCAAG
CTGCGTCCACCAGCTCCTCTTCCACGACGAGCAACAAAGCAAACCAGAAG
AATACAATGACAACAACGACAACAACAACTACAACTACTATTTACACTGC
TTCTAATACTACAACGATGGCGTTCGGGCCCGCAGCCACAGCAGCAGCTG
TGAAGGCAGGAGGTGCAGAATGGGCTGGTCTGGGCGACAGCCGCAGCCGC
AGCGGAGGCGAGGTCAAGACCCTTACCGATGGCAACAGTAACAACAACAG
CAACAACAGCAACAACAGTTACACCAGCAACAGCAACAACAAGAAGAAGG
GGAAGGGCTGCAAGGGCCCTCGCCCGCCTACCCCTGAGAGGGTTCGTGTA
CAGATGGAGGCGGCCCTCAGCCTGCCCAAGCCCAAGAGCAAGAGGGCCAT
TAACAAAAATAAAAGGCGCATCGCCAACAGGGCGGCCAAGAAGGCGCTGG
GCGAAGGCAGGAATGAGGGAGGATTGAAGTCCGCAGAGGTCATCCCTTCG
TTGGTGTTAGGGGAGGAAGGGGGGGAAGGAGGGGGGGCGGGGGAGGGGCA
ATGGGGCAGCAGCGAGGATGACACCTCGAGCACCACAACCACCACCACTA
CCACCACCATCATCACTTCCACGAGCAGCAGCAGCAACGGCAGCGACCTC
AGCGAGAGCAGTAGTGGCAGCAACACCTGTGACACCGGCAAGAGCACCAA
GAGCAGTGGCAGCAGCACTTGCACGGCCCTCGCGCTGTATAAGCCACTGG
ATGTCTTCGTTCCCAGGACCACAATCACTACCTCCACCACCACCACCAAA
CCCTCCACTCTTCTCATTAAGAGCAAGGGCTCGAGCATGCCCTGCATCCT
CTCCGAGAACCTCTCCGTCTCCTCGAAGAAGTTCCGCCGTGCTGCCTCAG
TCCCCGACCATGACTCCCTCCCTGCCTGGCCCGCCTACGCACGCGGACAT
TGCACCGTGCTGGCCTTTCCCCTGCCCTCCCTCGTTCCGACCATCCTCCC
TCCCACTGGGGCAGAGATGAAGAAGGAGGAACAGCAGCAGCTCTCGCTGC
CGGTCGCAGCGACGGGAGCAGGGCACATTTCGTTTGAGGCGTCTGCTGCT
ATTGCTGCTGATAATTATACTGGTAGCGCTGCCGATACTACTACTGCTGC
TGCTGCTACTATTGTTGCTGCTGCAACTACTACAACTACTACTTTTATTG
CTAAATGTACTACTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTTTGGAG
ACGGAAAATTTCCACCCAATTCACACCATTTGGGAGGCTTTCCCTTTCCT
CCTCCACCTCAACATCTCCGCCTCCTCCTCTTTCACCTCCTCCCCCTCCT
CCACCTCCGCCTTCGCCTCCTCTTTTTCGAAGCTGGATGTGCCTGGCTTG
AGCAACCGCCTCGTCCTCCATCATTCTGTCCAGCCCCTGGATTTGCTGAT
GGGGACGGAGGAAGGGAGGGAGGGAGGGATGGAGGAAGGCACGGAGGGAG
GGATGGAGCAAGGGATGGAGGGAGGGAACGAGGGAGGAATGGAAGAAGGG
GAAGAGGAAATAGAGGAGCGATTTTCGCGCTTAGGATCACCACTTTTCAT
GGAAGAGGAGGACGTGGAGGAGTGGCATGACCACCGTCCCTCCCTCCCTC
CCTCGTTCCTGCAGTCGATCTCTACCTCCATTCGCGCCATTTTGGGGTCA
GCTATGCGGCAGGTGAAGAGGACGTGGGAATGGATCAGGAAGAAAGGAGA
GGCGGGAACGAAGGCAATGCAAGCGATGAGCTGGGTGGCTGGGGGGGGTG
CGAAAAATACGGTCGCTTACGCATTGTCGTAAAAAGAGAGTGGGAGGAGA
GGGAGCGGGGGAAGGGAGAAGGGAAGGGAGAAGGGAAGGAGAGAAAGGGA
GGAAAGGGAGAATGAAAGGAGAAGGAAATAGGGAAGGGAGAGCGGGAGGA
GAGGAAGGGAGGGAGGGAGGAAGGGAGGAACAGTTTCATTATTTATCTAA
CCACGAGGTTTGCGCGAAGCAAGACCCGAAAGAGATTGGAGATAGCGACG
AGAGACAGAAGAAGAGTGTCGACGACAGGAAAGAAAACAAGTTCGAAAGA
AAGACAAAGAGACAGAAAGAGAGGCAGAGAGGGAGAAGACGAAAGGAAAG
AAAACAACAATCATAAAAAAGAAAAAAAGGCAAGTAGATGAAGGTGGAGA
ACGAGAAGATGGAGAACGTGCGAGACGAGAGAGAGGCAGACCAGATGGGA
CTAGGGGAGGGGGTCCACCTGTGAGACACAGAGATACAGAGATACAGAGA
CACAGAGATACAGAGATACAGAGACACAGAGATACAGAGACACAGAGACA
GAGACACAGAGACACAGAGATACAGAGACACAGAGATACAGAGACACAGA
GACACAGAGACACAGAGA

Coding sequence (CDS) from alignment at chr28:84035..86502+

>NO28G00220.1 ID=NO28G00220.1|Name=NO28G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr28:84035..86502+ (Nannochloropsis oceanica)
ATGACAACAACGACAACAACAACTACAACTACTATTTACACTGCTTCTAA
TACTACAACGATGGCGTTCGGGCCCGCAGCCACAGCAGCAGCTGTGAAGG
CAGGAGGTGCAGAATGGGCTGGTCTGGGCGACAGCCGCAGCCGCAGCGGA
GGCGAGGTCAAGACCCTTACCGATGGCAACAGTAACAACAACAGCAACAA
CAGCAACAACAGTTACACCAGCAACAGCAACAACAAGAAGAAGGGGAAGG
GCTGCAAGGGCCCTCGCCCGCCTACCCCTGAGAGGGTTCGTGTACAGATG
GAGGCGGCCCTCAGCCTGCCCAAGCCCAAGAGCAAGAGGGCCATTAACAA
AAATAAAAGGCGCATCGCCAACAGGGCGGCCAAGAAGGCGCTGGGCGAAG
GCAGGAATGAGGGAGGATTGAAGTCCGCAGAGGTCATCCCTTCGTTGGTG
TTAGGGGAGGAAGGGGGGGAAGGAGGGGGGGCGGGGGAGGGGCAATGGGG
CAGCAGCGAGGATGACACCTCGAGCACCACAACCACCACCACTACCACCA
CCATCATCACTTCCACGAGCAGCAGCAGCAACGGCAGCGACCTCAGCGAG
AGCAGTAGTGGCAGCAACACCTGTGACACCGGCAAGAGCACCAAGAGCAG
TGGCAGCAGCACTTGCACGGCCCTCGCGCTGTATAAGCCACTGGATGTCT
TCGTTCCCAGGACCACAATCACTACCTCCACCACCACCACCAAACCCTCC
ACTCTTCTCATTAAGAGCAAGGGCTCGAGCATGCCCTGCATCCTCTCCGA
GAACCTCTCCGTCTCCTCGAAGAAGTTCCGCCGTGCTGCCTCAGTCCCCG
ACCATGACTCCCTCCCTGCCTGGCCCGCCTACGCACGCGGACATTGCACC
GTGCTGGCCTTTCCCCTGCCCTCCCTCGTTCCGACCATCCTCCCTCCCAC
TGGGGCAGAGATGAAGAAGGAGGAACAGCAGCAGCTCTCGCTGCCGGTCG
CAGCGACGGGAGCAGGGCACATTTCGTTTGAGGCGTCTGCTGCTATTGCT
GCTGATAATTATACTGGTAGCGCTGCCGATACTACTACTGCTGCTGCTGC
TACTATTGTTGCTGCTGCAACTACTACAACTACTACTTTTATTGCTAAAT
GTACTACTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTTTGGAGACGGAA
AATTTCCACCCAATTCACACCATTTGGGAGGCTTTCCCTTTCCTCCTCCA
CCTCAACATCTCCGCCTCCTCCTCTTTCACCTCCTCCCCCTCCTCCACCT
CCGCCTTCGCCTCCTCTTTTTCGAAGCTGGATGTGCCTGGCTTGAGCAAC
CGCCTCGTCCTCCATCATTCTGTCCAGCCCCTGGATTTGCTGATGGGGAC
GGAGGAAGGGAGGGAGGGAGGGATGGAGGAAGGCACGGAGGGAGGGATGG
AGCAAGGGATGGAGGGAGGGAACGAGGGAGGAATGGAAGAAGGGGAAGAG
GAAATAGAGGAGCGATTTTCGCGCTTAGGATCACCACTTTTCATGGAAGA
GGAGGACGTGGAGGAGTGGCATGACCACCGTCCCTCCCTCCCTCCCTCGT
TCCTGCAGTCGATCTCTACCTCCATTCGCGCCATTTTGGGGTCAGCTATG
CGGCAGGTGAAGAGGACGTGGGAATGGATCAGGAAGAAAGGAGAGGCGGG
AACGAAGGCAATGCAAGCGATGAGCTGGGTGGCTGGGGGGGGTGCGAAAA
ATACGGTCGCTTACGCATTGTCGTAA

Synonyms

Publications