NO28G00200.1, NO28G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00200.1
Unique NameNO28G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr28:79333..81587 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:79333..81587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00200NO28G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00200.1NO28G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00200.1.cds1NO28G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00200.1.cds2NO28G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00200.1.cds3NO28G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00200.1.cds4NO28G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00200.1 ID=NO28G00200.1|Name=NO28G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
GAGGGAGGGAGGGAGTGAGGGAGTGGGGGAACGAGGGAGGGAGGACGTCA
TCCTCCTTCCACTCCTCACCCTTATTGGAGCATATGTACCTTTTTACACA
TAATTACATCTCTAGTGTATATATATATATAAAAATTATCTCTCTCTATA
TATATATTATTTTCTCCTTTCCCTCATTCGTGCACATGCATATTCTTCAT
AGCATCTCGCGCCTGAGGCTAAACTCACCCGAGGACAGGAAACTCCTTCT
CAGAGATCCCCGCTTCACGGACCTCATCGCCCGCCTTCCTCCCCTCCTTC
CTTCCACCTCCCCTCGGGCACTGGCCAACATCATTCATGCCCTTTCCAAG
CTACGATATTATCCAGAGGAGCCTCTCTTAGAAAGCTTGCTGGAGATGAT
GGAGCGACACCTCCCATCCTTCAAGCCCGCCGAGCTCTCCATGGCCACAT
CCGGCATCTCACGCCTCCTCTCTACCACCTCCTCCTCCTTCTCCTCCTCC
TCTTCTTCCACTCTCCCACGCCCCTCCTTCCTCCTCTCCCTCCACGCGGC
CATCGTCCCGATCTTTGTGGTTAGCGCCAATGAGGGAGCAAGGGAGGGAG
GGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAGGAGGAAGGCCTCCTCGGC
TCTCCCCACTTGGCCCTCACGCTTTCGGCCATCGTCCGTTTGGAGAGAGG
GAGGGAGGGATTCGGGGAGGGAGGAGTGTTTCGAGGGGAAAAGAAGTTCT
TGACGCTGCTGGCGGCGAGGGCGGGAGAGAGGGCGGGAAGGATGGAGGAG
TGGGAACGGGTGATGGTGAGAGAGGGGATAGCCACGTTAGGTGGTAAGGT
GCCGGAGGCGCTGAGGGAGGGAGGAAGAAGTGAAAGAGGGAGGGTGTAAT
TGGTAAATGCTTACACTGAATGGCCAAGGCGTAAGGTTTGGGAGACGAGA
TTTAAAAGTAGTAGGGTGAGTTATGAAACGAAGAGAAGCAGGAGAAGTGT
GTGAAAGAAACACACATAGAGACAGCGAGAGAGAGGTGAGAAGATGAAAG
AGGAGAGTAGAACGGGGTAGAGGTAAGGGAAAGAAAGATTCTTAATCACG
GGTTGGACCCGTGTCCCTCTTGATGATAGGATAGAAAGGCGATGGCTACA
ACAAATGGAGTATGAAGTATGAAGTGAATGAGTTGTAAAGAAGACATAGT
GAAAGGCAGGGGATGACCACTATAGTAGGAGTTTGAAGTAAATGAGTAGT
AAAGAAGACACAATGAAAGGCCGGGGATGGTAGTAGGAGGAGTATGAAGT
GAATGACAAGAAAAGACATAGTAAGTGGCAGAAGATGGTAGTGGAAGGCG
TGCCTGGTGAATGAGTAATATAGACATTTAGTCAGTCAATCGAACGTGAG
AGTCCCAAAAACAGGTGCATAGGGCAATTTAATCGTTTGAATCCATTGCA
ATGCTTATGCGAATTCCAAAGGACACGCCGCTTGAAAGACGATGCGAAGC
GAAGGGAGGGGACTCCACGAATTTTGTTGTCG
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protein sequence of NO28G00200.1

>NO28G00200.1-protein ID=NO28G00200.1-protein|Name=NO28G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MYLFTHNYISSVYIYIKIISLYIYIIFSFPSFVHMHILHSISRLRLNSPE
DRKLLLRDPRFTDLIARLPPLLPSTSPRALANIIHALSKLRYYPEEPLLE
SLLEMMERHLPSFKPAELSMATSGISRLLSTTSSSFSSSSSSTLPRPSFL
LSLHAAIVPIFVVSANEGAREGGREGGREGGKEEEGLLGSPHLALTLSAI
VRLERGREGFGEGGVFRGEKKFLTLLAARAGERAGRMEEWERVMVREGIA
TLGGKVPEALREGGRSERGRV*
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mRNA from alignment at chr28:79333..81587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00200.1 ID=NO28G00200.1|Name=NO28G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at chr28:79333..81587+ (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGTGAGGGAGTGGGGGAACGAGGGAGGGAGGACGTCA
TCCTCCTTCCACTCCTCACCCTTATTGGAGCATATGTACCTTTTTACACA
TAATTACATCTCTAGTGTATATATATATATAAAAATTATCTCTCTCTATA
TATATATTATTTTCTCCTTTCCCTCATTCGTGCACATGCATATTCTTCAT
AGCATCTCGCGCCTGAGGCTAAACTCACCCGAGGACAGGAAACTCCTTCT
CAGAGATCCCCGCTTCACGGTACGTCCCTCCTCATCACCTCCTTTCCCTC
CCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCCTCCCCTCCCTCCCTTCCC
TCCCCTCCCTCCCTTCCCTCCCCTCCCTTCCTACCGCCTCTTTCTAGCCT
GGACCACCGCGGCGTCTTCTCGCCCTCCTTCCCTCCCTCTTTTCTTCCTT
CCCTCCCTCCGTCCGGTCCCTCCCGCCTACTTTTTCCACGCCTCCTTCCT
CCCTCCTCATCACCTCTCCTTTCTCCCTCCCTCCTTCCCTCCATTCCCCA
GGACCTCATCGCCCGCCTTCCTCCCCTCCTTCCTTCCACCTCCCCTCGGG
CACTGGCCAACATCATTCATGCCCTTTCCAAGCTACGGTAGGGAGGGAGG
GAAGGAGGGAGGGAAGGGGAAAGGGAGGGGTATCCCTAAGTGCTAGGCAG
TGAGCGACCTTCCTCCATGGCTCGTTACCTAAATTTCATTTATCTCAGTT
TCCTAATCAAATTCCTAATTTCCATTTCATCTCCTTCCTAATCAAATTCC
TAATTTCCATTTCATCTCCTTCCTAATCAAATTCCTAATTTCCATTTCAT
CTCCTTCCTAATCAAATTCCTCCCCAATCAATTTCCTAACTCCCACTTTA
TCTCCTTCCTAATCAACTTTCTTCAAACAGATATTATCCAGAGGAGCCTC
TCTTAGAAAGCTTGCTGGAGATGATGGAGCGACACGTACGTACTTTCCCT
TCCTCCTTCCCTCCCTCCTTCACTCCCTTCTTCCCTCCCTTCTTCCCTCC
CTCCTTCCCTCCACCCCCTTTAACTCAAACACCATCGTCTTTCTTCTTTC
ACTCCCTCCCTTCCTCCCCCTCTTCCTCCTTAGCTCCCATCCTTCAAGCC
CGCCGAGCTCTCCATGGCCACATCCGGCATCTCACGCCTCCTCTCTACCA
CCTCCTCCTCCTTCTCCTCCTCCTCTTCTTCCACTCTCCCACGCCCCTCC
TTCCTCCTCTCCCTCCACGCGGCCATCGTCCCGATCTTTGTGGTTAGCGC
CAATGAGGGAGCAAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGA
AGGAGGAGGAAGGCCTCCTCGGCTCTCCCCACTTGGCCCTCACGCTTTCG
GCCATCGTCCGTTTGGAGAGAGGGAGGGAGGGATTCGGGGAGGGAGGAGT
GTTTCGAGGGGAAAAGAAGTTCTTGACGCTGCTGGCGGCGAGGGCGGGAG
AGAGGGCGGGAAGGATGGAGGAGTGGGAACGGGTGATGGTGAGAGAGGGG
ATAGCCACGTTAGGTGGTAAGGTGCCGGAGGCGCTGAGGGAGGGAGGAAG
AAGTGAAAGAGGGAGGGTGTAATTGGTAAATGCTTACACTGAATGGCCAA
GGCGTAAGGTTTGGGAGACGAGATTTAAAAGTAGTAGGGTGAGTTATGAA
ACGAAGAGAAGCAGGAGAAGTGTGTGAAAGAAACACACATAGAGACAGCG
AGAGAGAGGTGAGAAGATGAAAGAGGAGAGTAGAACGGGGTAGAGGTAAG
GGAAAGAAAGATTCTTAATCACGGGTTGGACCCGTGTCCCTCTTGATGAT
AGGATAGAAAGGCGATGGCTACAACAAATGGAGTATGAAGTATGAAGTGA
ATGAGTTGTAAAGAAGACATAGTGAAAGGCAGGGGATGACCACTATAGTA
GGAGTTTGAAGTAAATGAGTAGTAAAGAAGACACAATGAAAGGCCGGGGA
TGGTAGTAGGAGGAGTATGAAGTGAATGACAAGAAAAGACATAGTAAGTG
GCAGAAGATGGTAGTGGAAGGCGTGCCTGGTGAATGAGTAATATAGACAT
TTAGTCAGTCAATCGAACGTGAGAGTCCCAAAAACAGGTGCATAGGGCAA
TTTAATCGTTTGAATCCATTGCAATGCTTATGCGAATTCCAAAGGACACG
CCGCTTGAAAGACGATGCGAAGCGAAGGGAGGGGACTCCACGAATTTTGT
TGTCG
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Coding sequence (CDS) from alignment at chr28:79333..81587+

>NO28G00200.1 ID=NO28G00200.1|Name=NO28G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr28:79333..81587+ (Nannochloropsis oceanica)
ATGTACCTTTTTACACATAATTACATCTCTAGTGTATATATATATATAAA
AATTATCTCTCTCTATATATATATTATTTTCTCCTTTCCCTCATTCGTGC
ACATGCATATTCTTCATAGCATCTCGCGCCTGAGGCTAAACTCACCCGAG
GACAGGAAACTCCTTCTCAGAGATCCCCGCTTCACGGACCTCATCGCCCG
CCTTCCTCCCCTCCTTCCTTCCACCTCCCCTCGGGCACTGGCCAACATCA
TTCATGCCCTTTCCAAGCTACGATATTATCCAGAGGAGCCTCTCTTAGAA
AGCTTGCTGGAGATGATGGAGCGACACCTCCCATCCTTCAAGCCCGCCGA
GCTCTCCATGGCCACATCCGGCATCTCACGCCTCCTCTCTACCACCTCCT
CCTCCTTCTCCTCCTCCTCTTCTTCCACTCTCCCACGCCCCTCCTTCCTC
CTCTCCCTCCACGCGGCCATCGTCCCGATCTTTGTGGTTAGCGCCAATGA
GGGAGCAAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAGG
AGGAAGGCCTCCTCGGCTCTCCCCACTTGGCCCTCACGCTTTCGGCCATC
GTCCGTTTGGAGAGAGGGAGGGAGGGATTCGGGGAGGGAGGAGTGTTTCG
AGGGGAAAAGAAGTTCTTGACGCTGCTGGCGGCGAGGGCGGGAGAGAGGG
CGGGAAGGATGGAGGAGTGGGAACGGGTGATGGTGAGAGAGGGGATAGCC
ACGTTAGGTGGTAAGGTGCCGGAGGCGCTGAGGGAGGGAGGAAGAAGTGA
AAGAGGGAGGGTGTAA
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Synonyms
Publications