NO28G00180.1, NO28G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00180.1
Unique NameNO28G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2028
Alignment locationchr28:73607..76265 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:73607..76265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00180NO28G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00180.1NO28G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00180.1.cds1NO28G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00180.1.cds2NO28G00180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00180.1.cds3NO28G00180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00180.1.cds4NO28G00180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00180.1 ID=NO28G00180.1|Name=NO28G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp
TCTTTTCTTTTTGGCTCGTTCTCCTTATTTATCTACATCTTTATCTTTAT
CCCTCTCTCGCCATTGCTTGGCCTTTGCCCTCCCTCCTCCACTTCATGAT
TGTCCTCACTGCCAATGACAATTCTTCTTGTCGGTCACGGCCCATTTTAC
GCCTCTCCGGAGGCCTCGCTGTCTTTGATCCGACACGCTCCCATGTAGTG
TAGCTTCGCTTGTTCTGCTGCCATCGTGCTTTCCTACCGAAACACACTAC
GTTGGCATCGACGGGTGTACTGCAATTGGTCGATGGCTTTGTCTCCGTTG
TCGTTTTTCTTTTTTGGTTGCCTTGTTGAGCTCTCGGTCGACGACAAGCA
GCAGCAGCAGTAATGCAGCAGCAGCACAAGCAGCAGCGGCAGTAGCATGT
AAAGGATGCCCTTCTTCTCCCCCTCTCTCCCTCTTTCTCGACAAAGCGCG
CATCTCCACCAAGTCTACACCCTCCCCTTGCCTCACACAAGGCCTAGATA
GCATGTTGCGCAGAGGGCAAATTGTTTCCGTCTTTTTCCGGCACGTTCGC
GCACGAGAGATCTCAAACCTCTCCCTATGCCCCCCCTTGTCCTCCCTCCC
CCTATCCTTTTTCCAAGCCCCACCACCATGCTCCTTAATGTCATTGGGAC
CGCAGACAGTGGCAAATTAAAGGTGGGCCAAGTCAAGGACAAGTGGGAGG
AAGAGGAGGAGGGGGAGGATTGGATCGTAGTCGGGCCGAGTGGCAGCGCC
GCGGGTAGTAGTCTCGAGGGGGGCAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCAGGACAAGGCGAAAACGAGGATAAAAAGGTCGACA
AGGGGGAGGAGAAATTAAGAAGACCGATGAGCGAAAGATACGACGAGATC
TTTCTTCGGGATACTCCCTCCCTCTTTTTCGACTTCCTCTCCTCCTCCTC
CTCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTTCTCCTTCCC
TTCCTCACTTCACCCCTCCGAAGAAGAGAAAGGCATTGCCATGAGCAGGG
GAGGAGAATGGAGGGAGGAGAGGGAGGGAGAGAGGGAAGGCTGGCGAAGA
CGAAGACCAGGGGGAGCAGGAGACTTGACGTCATCCTGGTCATGGCAGTC
ATCGTCGGTATCACCGAGCACCAGGCTTCTCGGCGTCTTATGTTCGCCTC
TCAAAACCCTGGCCCATATGAGGACTAGAATAGGCGTCCCGAGTCCCACC
TCCTCCTCCTCCACCTCGTCCTCCTCCTCCTCCTCCTCCCTCTCCGACAG
CCCGAGGGAGGAAGACAAAGACAAGGACGGGAAGGCGGAGGGGAGAGAAG
AGAAAAAAGAGAACGAAAATAAGAATGAGGAGGAGGAAGAGAAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGCAAGATGAAAAC
CCCGAGCACGAGAGTTCCTCCTCTTCCGTCCTCATCCTGGTGGTGGTGGA
AAGGAGGAGGTGGAAGGGGGGAGGGAGGGAGGGAGGGAGGGATGGCCAAG
GGGTGGCTGACACCTGAGGATGTGTTAGTGCCCAAGGCGAGGCAATGTCG
ACTGCTGGCAGAAGGAGGGAGGGAGGGAGGAGGAGGACAGGGAGGGGGAG
GAGAAGGGGGAGGGAAGGTGGTGGCTGCGGCAGGGTCCCTCCTTCACCTC
ACCCGCCAGGCCATCGACCTCTCCTCTCCTCCAGTGCGTCTCCTCTTCAA
GAAGGGCGTCAGCTGTACCCATCTGTACATGTCGTACGTCGGGAACCATG
TACAGAGATGGTGGGAGGACGAGGAAGGGAGCGACAGGGAGGGCGAGGAG
GAGGAAGGGGAGGTGGAGGGGCAGAAGACGAAGGGGAGCGAGGGTATACG
GACGGGAATGGATGGGGTGATGGAGAGGGAGGAAAGGAGGGAGGGAGGGG
TGGTGATGGAGTTGTCGCCGTATCAGAGGACGAGGGATGTGGTGGGAGGG
CAATGAGGGAGGGAGGGAGGGAGGGAGG
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protein sequence of NO28G00180.1

>NO28G00180.1-protein ID=NO28G00180.1-protein|Name=NO28G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSRGGEWREEREGEREGWRRRRPGGAGDLTSSWSWQSSSVSPSTRLLGVL
CSPLKTLAHMRTRIGVPSPTSSSSTSSSSSSSSLSDSPREEDKDKDGKAE
GREEKKENENKNEEEEEKEEEKEEEEEEEEEESKMKTPSTRVPPLPSSSW
WWWKGGGGRGEGGREGGMAKGWLTPEDVLVPKARQCRLLAEGGREGGGGQ
GGGGEGGGKVVAAAGSLLHLTRQAIDLSSPPVRLLFKKGVSCTHLYMSYV
GNHVQRWWEDEEGSDREGEEEEGEVEGQKTKGSEGIRTGMDGVMEREERR
EGGVVMELSPYQRTRDVVGGQ*
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mRNA from alignment at chr28:73607..76265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00180.1 ID=NO28G00180.1|Name=NO28G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp|location=Sequence derived from alignment at chr28:73607..76265- (Nannochloropsis oceanica)
TCTTTTCTTTTTGGCTCGTTCTCCTTATTTATCTACATCTTTATCTTTAT
CCCTCTCTCGCCATTGCTTGGCCTTTGCCCTCCCTCCTCCACTTCATGAT
TGTCCTCACTGCCAATGACAATTCTTCTTGTCGGTCACGGCCCATTTTAC
GCCTCTCCGGAGGCCTCGCTGTCTTTGATCCGACACGCTCCCATGTAGTG
TAGCTTCGCTTGTTCTGCTGCCATCGTGCTTTCCTACCGAAACACACTAC
GTTGGCATCGACGGGTGTACTGCAATTGGTCGATGGCTTTGTCTCCGTTG
TCGTTTTTCTTTTTTGGTTGCCTTGTTGAGCTCTCGGTCGACGACAAGCA
GCAGCAGCAGTAATGCAGCAGCAGCACAAGCAGCAGCGGCAGTAGCATGT
AAAGGATGCCCTTCTTCTCCCCCTCTCTCCCTCTTTCTCGACAAAGCGCG
CATCTCCACCAAGTCTACACCCTCCCCTTGCCTCACACAAGGCCTAGATA
GCATGTTGCGCAGAGGGCAAATTGTTTCCGTCTTTTTCCGGCACGTTCGC
GCACGAGAGATCTCAAACCTCTCCCTATGCCCCCCCTTGTCCTCCCTCCC
CCTATCCTTTTTCCAAGCCCCACCACCATGCTCCTTAATGTCATTGGGAC
CGCAGACAGTGGCAAATTAAAGGTGGGCCAAGTCAAGGACAAGTGGGAGG
AAGAGGAGGAGGGGGAGGATTGGATCGTAGTCGGGCCGAGTGGCAGCGCC
GCGGGTAGTAGTCTCGAGGGGGGCAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCAGGACAAGGCGAAAACGAGGATAAAAAGGTCGACA
AGGGGGAGGAGAAATTAAGAAGACCGATGAGCGAAAGGTGTGTACATATA
TCAATTTTAATAGTCTAAGTGAATGTAACTGAAATTTTGTTCCCATACGA
CGGCAGATATCTAACCCTTCCTTCATTTCCTCTCTCTCTCCCTCCTTCCC
TTCCATCCCTCCCTCTTTCCCTCTTCTCCCTCCTTCACCTCTTCCTCCCT
CTTAGATACGACGAGATCTTTCTTCGGGATACTCCCTCCCTCTTTTTCGA
CTTCCTCTCCTCCTCCTCCTCCCCCCTTCCTCCTCCTCCTCCTCCTCCTC
TTCCTCCTTCTCCTTCCCTTCCTCACTTCACCCCTCCGAAGAAGAGAAAG
GCATTGCCATGAGCAGGGGAGGAGAATGGAGGGAGGAGAGGGAGGGAGAG
AGGGAAGGCTGGCGAAGACGAAGACCAGGGGGAGCAGGAGACTTGACGTC
ATCCTGGTCATGGCAGTCATCGTCGGTATCACCGAGTGCGTTTTTCTCAA
AGCTCCCTCCCTCCGTCCCTCTCTCCCTCCCTCCATCCTTCCCTTTCTTA
CTCCTCCCCCTCCTCCTTCCGCCCCTCCTTCACTCTTTCTCCGCCATCAT
AGATGTCATCCGACGTCAACTCCCTCTCTCCCTCCCTCCCCCCCTCCATC
CCTCCCTCCCAATCCCTCCCTCCCTCCCTCCCTTCCTCAGGCACCAGGCT
TCTCGGCGTCTTATGTTCGCCTCTCAAAACCCTGGCCCATATGAGGACTA
GAATAGGTGAGGGAGGAGGGAGGGAGGGAGGGAGAGCGGGTACTACCACT
GGATAATATCATCACCGATCACCTCCCTCCCTCCCTCCCTTCCTTCCTCC
TTCCTCCCTTCCTCCCTTTTTCGTAGGCGTCCCGAGTCCCACCTCCTCCT
CCTCCACCTCGTCCTCCTCCTCCTCCTCCTCCCTCTCCGACAGCCCGAGG
GAGGAAGACAAAGACAAGGACGGGAAGGCGGAGGGGAGAGAAGAGAAAAA
AGAGAACGAAAATAAGAATGAGGAGGAGGAAGAGAAGGAGGAGGAGAAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGCAAGATGAAAACCCCGAGC
ACGAGAGTTCCTCCTCTTCCGTCCTCATCCTGGTGGTGGTGGAAAGGAGG
AGGTGGAAGGGGGGAGGGAGGGAGGGAGGGAGGGATGGCCAAGGGGTGGC
TGACACCTGAGGATGTGTTAGTGCCCAAGGCGAGGCAATGTCGACTGCTG
GCAGAAGGAGGGAGGGAGGGAGGAGGAGGACAGGGAGGGGGAGGAGAAGG
GGGAGGGAAGGTGGTGGCTGCGGCAGGGGTAAGTGAATCTCAGACGGTCG
TCTTACGGCTGCCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTTCCTCCC
TCCTTCCCGCGGAGCTCTGCGTACTCACCCTCCCTCCCTCCTTCCCTCCC
TCCTTCCCTCCCTCAGTCCCTCCTTCACCTCACCCGCCAGGCCATCGACC
TCTCCTCTCCTCCAGTGCGTCTCCTCTTCAAGAAGGGCGTCAGCTGTACC
CATCTGTACATGTCGTACGTCGGGAACCATGTACAGAGATGGTGGGAGGA
CGAGGAAGGGAGCGACAGGGAGGGCGAGGAGGAGGAAGGGGAGGTGGAGG
GGCAGAAGACGAAGGGGAGCGAGGGTATACGGACGGGAATGGATGGGGTG
ATGGAGAGGGAGGAAAGGAGGGAGGGAGGGGTGGTGATGGAGTTGTCGCC
GTATCAGAGGACGAGGGATGTGGTGGGAGGGCAATGAGGGAGGGAGGGAG
GGAGGGAGG
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Coding sequence (CDS) from alignment at chr28:73607..76265-

>NO28G00180.1 ID=NO28G00180.1|Name=NO28G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr28:73607..76265- (Nannochloropsis oceanica)
ATGAGCAGGGGAGGAGAATGGAGGGAGGAGAGGGAGGGAGAGAGGGAAGG
CTGGCGAAGACGAAGACCAGGGGGAGCAGGAGACTTGACGTCATCCTGGT
CATGGCAGTCATCGTCGGTATCACCGAGCACCAGGCTTCTCGGCGTCTTA
TGTTCGCCTCTCAAAACCCTGGCCCATATGAGGACTAGAATAGGCGTCCC
GAGTCCCACCTCCTCCTCCTCCACCTCGTCCTCCTCCTCCTCCTCCTCCC
TCTCCGACAGCCCGAGGGAGGAAGACAAAGACAAGGACGGGAAGGCGGAG
GGGAGAGAAGAGAAAAAAGAGAACGAAAATAAGAATGAGGAGGAGGAAGA
GAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGCA
AGATGAAAACCCCGAGCACGAGAGTTCCTCCTCTTCCGTCCTCATCCTGG
TGGTGGTGGAAAGGAGGAGGTGGAAGGGGGGAGGGAGGGAGGGAGGGAGG
GATGGCCAAGGGGTGGCTGACACCTGAGGATGTGTTAGTGCCCAAGGCGA
GGCAATGTCGACTGCTGGCAGAAGGAGGGAGGGAGGGAGGAGGAGGACAG
GGAGGGGGAGGAGAAGGGGGAGGGAAGGTGGTGGCTGCGGCAGGGTCCCT
CCTTCACCTCACCCGCCAGGCCATCGACCTCTCCTCTCCTCCAGTGCGTC
TCCTCTTCAAGAAGGGCGTCAGCTGTACCCATCTGTACATGTCGTACGTC
GGGAACCATGTACAGAGATGGTGGGAGGACGAGGAAGGGAGCGACAGGGA
GGGCGAGGAGGAGGAAGGGGAGGTGGAGGGGCAGAAGACGAAGGGGAGCG
AGGGTATACGGACGGGAATGGATGGGGTGATGGAGAGGGAGGAAAGGAGG
GAGGGAGGGGTGGTGATGGAGTTGTCGCCGTATCAGAGGACGAGGGATGT
GGTGGGAGGGCAATGA
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Synonyms
Publications