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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr28 | genome | chr28:65606..69889 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00160.1 vs.
Match: WP_006298283.1 (NAD(P)/FAD-dependent oxidoreductase [Hylemonella gracilis]; EGI76473.1 FAD dependent oxidoreductase [Hylemonella gracilis ATCC 19624]) HSP 1 Score: 372.5 bits (955), Expect = 2.000e-99 Identity = 204/397 (51.39%), Postives = 262/397 (65.99%), Query Frame = 0
Query: 95 VDVLVCGAGVVGLAIARAFARAGREVLVVEAEKSFGTQTSARNSEVIHAGIYYPPGSLKASLCVRGRQMLYTFCEEHGVPFRRCGKLIVATSDKGDDGQRLEALYHQAHSNGVIDLQRLSSRDVARMEPHVHCMQALFSPSTGILDSHQFMLALLGDAEDHGASIAYRSRVQIKEVSPAGFVSLTTVEGEGKEPSTDLRPRLFINTTGLSALPLARQIGRRPAGLPP--FPPPSYAKGNYFRLGPPPLPSSPPTLPPSLPPFNCLVYPLPETAGLGIHATIDLGGQVRFGPDVEWVS----DPDDLSVNPSRAESFYASIRRYFPSLQDGQLVADYAGIRPKIQSPHDKTASDFILEGGPSSSGGGREGGMEGIINCVGIESPGLTASLAIAEWVKQ 486
VDV+V GAGV+GLA+ARA A +GREVLV+EA + GT TS+RNSEVIHAG+YYP G+LKA LCV+GR MLY +C E GV RRCGKL+VATS+ +L+A+ QA +NGV DLQ LS + +EP + C+ AL SPSTGI+DSH MLAL GD E+ G + + + V V P G + + V+ ST LR R F+N GLSA LARQI GL P P YAKG+YF L PF+ L+YP+PE GLG+H T+DLGGQ RFGPD EW+S D D +V+P+R ESFYA +RRY+P LQDG L Y+G+RPKI +P D+ A+DF+++ G + G+ G++N +GIESPGLT+ LA+ EWV+Q
Sbjct: 16 VDVVVAGAGVIGLAVARALALSGREVLVLEAASAIGTGTSSRNSEVIHAGLYYPTGTLKARLCVQGRDMLYAYCAERGVSHRRCGKLLVATSEA--QLPKLQAIAAQAAANGVHDLQWLSRDEAQALEPALQCVAALHSPSTGIIDSHGLMLALQGDLENAGGQVVFNTPVTRATVMPDG-IEIEAVD-RASGSSTRLRARTFVNAAGLSAPALARQI----QGLNPRHVPTAHYAKGSYFSLA-------------GRAPFSRLIYPMPEGGGLGVHLTLDLGGQARFGPDAEWLSVDTADQIDYTVDPARGESFYAEVRRYWPGLQDGALQPAYSGVRPKISAP-DEAAADFVIQ-------GPADHGVPGLVNLLGIESPGLTSCLAMGEWVRQ 383
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00160.1 ID=NO28G00160.1|Name=NO28G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp GGGGGGCAAGGCATGAAGGTCCAAGCCGGTGGATTTTCGTGTGCAGCCAC CAACGGCCAGCAGTAACAACAACAACTGACACGTGGGACGCCATCCAGGC GGCGACAAAGAGAGGCGAACGCACCTTTTATAGACTGTATGTCGCACGTA CGTGATGAATGATGATTTGGAGGATAAGTCCCGGGAATGACTGTGTGCGT GTGCATCTATTCCGAGTCGCTGGTGCTTTGTTCCATCAAGGCGAGTTGCA GCAGCAGCAGCAGTAGCAGCTGTAACAGCAGCAAGTTCCTTCTTCGTCAG TCTCAATCTCTCTGCAATCTTCACACTCAACGACAGCCAGAAAAGGGAAG GCGGGGAGGAGGTGTTAGACGAAAAATGCTCCCCAAAATAGCTCCTCGAG CCCTCATCAATTGCAGCAGTCACAATCGTCGTCGGCGCTGGCTGTCCACC CTCCCTTCCTCATTTAATGTGGACGTGTTGGTCTGCGGGGCAGGCGTTGT GGGTTTGGCTATTGCCAGGGCGTTTGCTAGGGCAGGGCGGGAAGTGCTAG TGGTGGAGGCCGAGAAAAGCTTTGGCACCCAAACGTCGGCACGCAACAGC GAGGTCATTCACGCAGGCATCTACTACCCTCCTGGCTCTCTTAAAGCCTC TCTGTGTGTGCGAGGTCGGCAGATGCTCTATACTTTTTGCGAGGAACACG GCGTGCCCTTTCGGAGATGCGGCAAGCTCATCGTGGCCACCAGTGACAAG GGAGACGACGGCCAACGATTAGAGGCCCTGTACCACCAAGCTCACTCTAA CGGCGTCATCGACCTTCAACGGCTTTCTTCCCGTGACGTCGCTCGCATGG AGCCTCACGTCCACTGCATGCAGGCCCTCTTCTCCCCATCGACCGGTATC TTAGACAGTCACCAATTTATGCTTGCACTCCTGGGAGATGCTGAGGATCA TGGTGCCTCTATCGCTTACCGTAGCCGTGTGCAGATTAAGGAGGTCTCAC CCGCCGGATTCGTGAGCCTCACGACGGTCGAGGGAGAGGGGAAGGAGCCC TCCACGGACCTTCGCCCGCGCCTCTTCATCAACACCACGGGCCTCTCCGC CCTCCCTCTCGCCCGTCAAATCGGACGCCGACCAGCGGGCCTTCCTCCCT TCCCCCCACCCTCCTATGCCAAAGGCAACTACTTCCGCCTCGGTCCCCCC CCCCTCCCTTCCTCCCCTCCCACCCTCCCTCCCTCCCTCCCTCCATTTAA CTGCCTCGTCTATCCGTTACCGGAAACGGCTGGGCTAGGCATTCATGCCA CCATCGACCTCGGGGGGCAAGTCCGTTTCGGTCCTGACGTGGAGTGGGTG TCAGACCCAGACGACCTCTCCGTAAACCCTTCTCGCGCCGAGTCCTTCTA CGCCTCCATCCGGCGTTACTTTCCTTCCTTGCAAGACGGACAACTCGTCG CCGACTACGCAGGAATCAGACCCAAGATCCAGAGTCCCCACGATAAGACA GCCAGCGATTTTATTTTGGAGGGCGGTCCCTCTTCTTCCGGAGGAGGGAG AGAGGGAGGGATGGAGGGTATCATCAATTGTGTGGGAATTGAGAGTCCTG GCTTGACGGCGTCGCTGGCTATTGCGGAGTGGGTGAAACAAAGAGCGATG GGGTGAGGAGGAGTAGAAGGCGGGTGGGGGGTATAATCTTGTTCTGACTC TAATACATTGATCATATTTATTAAGTAGAAAAGTGCATAGATGCAAGCCA TCAAGTGGATTATCAAAGCCTGTGAATACAAGAGAGATTGAAACGAAATA TGTCAGATGGTTTGGGGCCCTTCTCCCCTTCTCTGTTAAATTTAGGGTAG GTCTGCGTGCACGCGTGTCGCTCTCTATGCTTTCTCTAGTACGAATGCTT TCTTGTGTACGAGGGCATTTGGATGTGCTGCTTTGACACAACACAGCCTC CCTTTTTCGGATTTCTAGCCCCCTTTATTTCATTCAAAGATGCCATTTGT TGCCCCCTAGAAAGCATCTAAAAAATTCAAGTATCTCTCGAAAGAGTGCA TGTGTTTTGTCCGTGGCTGGAAGTGATATGTGGGTGTATGCTTGGGAGCA CTGGAGGCAAAGAAGCAACGCAATAGTTGAAGTTGCTGGAGCGACACTGG ATAAGGAGGAAAGGAG back to topprotein sequence of NO28G00160.1 >NO28G00160.1-protein ID=NO28G00160.1-protein|Name=NO28G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp MTVCVCIYSESLVLCSIKASCSSSSSSSCNSSKFLLRQSQSLCNLHTQRQ PEKGRRGGGVRRKMLPKIAPRALINCSSHNRRRRWLSTLPSSFNVDVLVC GAGVVGLAIARAFARAGREVLVVEAEKSFGTQTSARNSEVIHAGIYYPPG SLKASLCVRGRQMLYTFCEEHGVPFRRCGKLIVATSDKGDDGQRLEALYH QAHSNGVIDLQRLSSRDVARMEPHVHCMQALFSPSTGILDSHQFMLALLG DAEDHGASIAYRSRVQIKEVSPAGFVSLTTVEGEGKEPSTDLRPRLFINT TGLSALPLARQIGRRPAGLPPFPPPSYAKGNYFRLGPPPLPSSPPTLPPS LPPFNCLVYPLPETAGLGIHATIDLGGQVRFGPDVEWVSDPDDLSVNPSR AESFYASIRRYFPSLQDGQLVADYAGIRPKIQSPHDKTASDFILEGGPSS SGGGREGGMEGIINCVGIESPGLTASLAIAEWVKQRAMG* back to topmRNA from alignment at chr28:65606..69889- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00160.1 ID=NO28G00160.1|Name=NO28G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4284bp|location=Sequence derived from alignment at chr28:65606..69889- (Nannochloropsis oceanica) GGGGGGCAAGGCATGAAGGTCCAAGCCGGTGGATTTTCGTGTGCAGCCAC
CAACGGCCAGCAGTAACAACAACAACTGACACGTGGGACGCCATCCAGGC
GGCGACAAAGAGAGGCGAACGCACCTTTTATAGACTGTATGTCGCACGTA
CGTGATGAATGATGATTTGGAGGATAAGTCCCGGGAATGACTGTGTGCGT
GTGCATCTATTCCGAGTCGCTGGTGCTTTGTTCCATCAAGGCGAGTTGCA
GCAGCAGCAGCAGTAGCAGCTGTAACAGCAGCAAGTTCCTTCTTCGTCAG
TCTCAATCTCTCTGCAATCTTCACACTCAACGACAGCCAGAAAAGGGAAG
GCGGGGAGGAGGTGTTAGACGAAAAATGCTCCCCAAAATAGCTCCTCGAG
CCCTCATCAATTGCAGCAGTCACAATCGTCGTCGGCGCTGGCTGTCCACC
CTCCCTTCCTCATTTAATGTGGACGTGTTGGTCTGCGGGGCAGGCGTTGT
GGGTTTGGCTATTGCCAGGGCGTTTGCTAGGTAAGGAAAGATGGCATTTG
TCGGGGGGCGAAAGGTCGGAAAAGAATTGAGGGAAAAGAGGGTGCATGAA
GGGAAGGGGGGGGAGGTCGAGCAGGGAGGAAGGGGTACACATGAGAGCGT
CAGTGCACTGTGAACGTTTACGTGTCACACAAGTCAGGACATATGAAGAG
AGGTAGAATGTTGGAGGAGAGGAGTTGGGGAAGCAGAGAATGACCCTTAA
CCTTTGCACGTAAATTTCTATGTACACTACGCAGGGCAGGGCGGGAAGTG
CTAGTGGTGGAGGCCGAGAAAAGCTTTGGCACCCAAACGTCGGCACGCAA
CAGCGAGGTAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGATGAAGAAG
GTAGGGTAGAACCGAAGTGTCACCGTCCCTCCCTCTCTCCCTCCCTCCCT
CCCTCTGAAGGTCATTCACGCAGGCATCTACTACCCTCCTGGCTCTCTTA
AAGCCTCTCTGTGTGTGCGAGGTCGGCAGATGCTCTATACTTTTTGCGAG
GAACACGGCGTGCCCTTTCGGAGGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGCGAGGAAAGGTTTGAGTCAGTAGGGTGCACACATCTTCGTACC
TTTATCTGTAGATGCGGCAAGCTCATCGTGGCCACCAGTGACAAGGGAGA
CGACGGCCAACGATTAGAGGTACGTTTCCATCCTCCCTCTCTCCTTTCCT
TCCTCCCTTCCTCCTTCCCTCCCTCCCTCAGCCCCTCCCTTCCTCCCTCC
CTTGCTATCTCCCGCGCTCACTTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCTTGTCTACCGTCCTCAGGCCCTGTACCACCAAGCTCACTCTAA
CGGCGTCATCGACCTTCAACGGCTTTCTTCCCGTGACGTCGCTCGCATGG
AGCCTCACGTCCACTGCATGCAGGTACTCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCTTTCCTCCCCTCTCTCCCTCCCTCCCTCTTCATGGCCGTGAT
GCCGGCCTCGTCAAGCTTGTCAGAATGACTTTCATATCTCCCCTCATTTC
CTCCCTGTTAAATTAAGTCATGATCGTGCCTTCTTCTTTCCCCCCCGCCT
CCTTCTCACTTTCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCCCAGGCCCTCTTCTCCCCATCGACCGGTATCTT
AGACAGTCACCAATTTATGCTTGCACTCCTGGGAGATGCTGAGGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGGAGTGGGAAAAATAATAAT
GAATTAAAAGTTACTTCCCTCCCTCCTTCCCTCCCTCCCTCTCTCTCTCT
CTCTCTCCCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCCCTCTCTCT
CTCTCTCTCTCCCTCCCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCC
CTCCCTCCCTCAGGATCATGGTGCCTCTATCGCTTACCGTAGCCGTGTGC
AGATTAAGGAGGTCTCACCCGCCGGATTCGTGAGCCTCACGACGGTCGAG
GGAGAGGGGAAGGAGGTGGGGGAAAGAGGGAGAGAGAGTGAGAGGGAGGG
AGGGAGGGAGAGAGGGAGGGAAGGAAGCAACATTTTAATTCATCGTGATT
GGTTAGGGAAGGATGGAGGGAGGGGGAGAGAAAGGGATGGAGGGGAGGGC
CCAGGGCCGAGTCAATATTCGTTTAAAACGGAAAGGAAATCGGTCCTTTT
TTTGCTGATCCCCCTCTCCCCCTCGTTCTCCCTCCTTCCAGCCCTCCACG
GACCTTCGCCCGCGCCTCTTCATCAACACCACGGGCCTCTCCGCCCTCCC
TCTCGCCCGTCAAATCGGACGCCGACCAGCGGTAAGCAAGCCCTCCCTCC
TTCCCTCTCTGTCTCCCTCCCTCCCTCCCTCCTTATTCTCCGCTCCCTTC
TCCTTTCCCGGTGCTCAATTACTCTTCCCTTCTTTTCCCCCTCCTTTTCT
CCGCTCACAGGGCCTTCCTCCCTTCCCCCCACCCTCCTATGCCAAAGGCA
ACTACTTCCGCCTCGGTCCCCCCCCCCTCCCTTCCTCCCCTCCCACCCTC
CCTCCCTCCCTCCCTCCATTTAACTGCCTCGTCTATCCGTTACCGGAAAC
GGCTGGGCTAGGCATTCATGCCACCATCGACCTCGGGGGGCAAGTCCGTT
TCGGTCCTGACGTGGAGTGGGTGTCAGACCCAGGCACGTACCTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTATGATATTGCTTCGT
ATTGCAATGGGTAGGGAGGGAGGGAGGAAGGGGAGGAGGGAGGGAGGAAG
GGAGAAGAAAGCGAAGAAAGAGAAGATCTAGATTGAGTCGGTGGAAAATC
ACTATGGTGGCAACTTGGATTCTGATCACCCCCCCTTCCTCCCTCCCTCC
CTCCCTCCGTACAGACGACCTCTCCGTAAACCCTTCTCGCGCCGAGGTGA
GTGCTGGATTGTACTTTCTGGTCTCATCTGAACCTCCCCTTCCCTCCTTC
CCTTCCTCCTCCTATCCTTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCT
ATCCCTCCGCCCTCCTCAATATTAACTTTGTCCGGGTCTCTTACCCTTCC
CTTACTCCCTCCTTCCCTCCCTTCCCAGTCCTTCTACGCCTCCATCCGGC
GTTACTTTCCTTCCTTGCAAGACGGACAACTCGTCGCCGACTACGCAGGA
ATCAGACCCAAGATCCAGGCGAGGGAGGGAGGGAGGGAGGGAGAGAGGGA
GGGAAGGGAGGGGTGGTTCAGAAAACGGAAAAGGAAAGAGGGCTGGGAAT
GAAGAGGAAGGGAGGGAGGGAAGAGAGGGAGGGAAGGGAGGGAGGGAAGG
GAGGGAGGGAAGGGAGAGAGAAATGTGCAAATGTTTGAGGTTTTTCACTC
TCCTTTCTATTTCGCGGGTGTGCTCTGTGCCGTGCTTCTTACCTTCTCCC
CTTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCGGTCTTCTCAG
AGTCCCCACGATAAGACAGCCAGCGATTTTATTTTGGAGGGCGGTCCCTC
TTCTTCCGGAGGAGGGAGAGAGGGAGGGATGGAGGGTATCATCAATTGTG
TGGGAATTGAGAGTCCTGGCTTGACGGCGTCGCTGGCTATTGCGGAGTGG
GTGAAACAAAGAGCGATGGGGTGAGGAGGAGTAGAAGGCGGGTGGGGGGT
ATAATCTTGTTCTGACTCTAATACATTGATCATATTTATTAAGTAGAAAA
GTGCATAGATGCAAGCCATCAAGTGGATTATCAAAGCCTGTGAATACAAG
AGAGATTGAAACGAAATATGTCAGATGGTTTGGGGCCCTTCTCCCCTTCT
CTGTTAAATTTAGGGTAGGTCTGCGTGCACGCGTGTCGCTCTCTATGCTT
TCTCTAGTACGAATGCTTTCTTGTGTACGAGGGCATTTGGATGTGCTGCT
TTGACACAACACAGCCTCCCTTTTTCGGATTTCTAGCCCCCTTTATTTCA
TTCAAAGATGCCATTTGTTGCCCCCTAGAAAGCATCTAAAAAATTCAAGT
ATCTCTCGAAAGAGTGCATGTGTTTTGTCCGTGGCTGGAAGTGATATGTG
GGTGTATGCTTGGGAGCACTGGAGGCAAAGAAGCAACGCAATAGTTGAAG
TTGCTGGAGCGACACTGGATAAGGAGGAAAGGAG back to topCoding sequence (CDS) from alignment at chr28:65606..69889- >NO28G00160.1 ID=NO28G00160.1|Name=NO28G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr28:65606..69889- (Nannochloropsis oceanica) ATGACTGTGTGCGTGTGCATCTATTCCGAGTCGCTGGTGCTTTGTTCCAT CAAGGCGAGTTGCAGCAGCAGCAGCAGTAGCAGCTGTAACAGCAGCAAGT TCCTTCTTCGTCAGTCTCAATCTCTCTGCAATCTTCACACTCAACGACAG CCAGAAAAGGGAAGGCGGGGAGGAGGTGTTAGACGAAAAATGCTCCCCAA AATAGCTCCTCGAGCCCTCATCAATTGCAGCAGTCACAATCGTCGTCGGC GCTGGCTGTCCACCCTCCCTTCCTCATTTAATGTGGACGTGTTGGTCTGC GGGGCAGGCGTTGTGGGTTTGGCTATTGCCAGGGCGTTTGCTAGGGCAGG GCGGGAAGTGCTAGTGGTGGAGGCCGAGAAAAGCTTTGGCACCCAAACGT CGGCACGCAACAGCGAGGTCATTCACGCAGGCATCTACTACCCTCCTGGC TCTCTTAAAGCCTCTCTGTGTGTGCGAGGTCGGCAGATGCTCTATACTTT TTGCGAGGAACACGGCGTGCCCTTTCGGAGATGCGGCAAGCTCATCGTGG CCACCAGTGACAAGGGAGACGACGGCCAACGATTAGAGGCCCTGTACCAC CAAGCTCACTCTAACGGCGTCATCGACCTTCAACGGCTTTCTTCCCGTGA CGTCGCTCGCATGGAGCCTCACGTCCACTGCATGCAGGCCCTCTTCTCCC CATCGACCGGTATCTTAGACAGTCACCAATTTATGCTTGCACTCCTGGGA GATGCTGAGGATCATGGTGCCTCTATCGCTTACCGTAGCCGTGTGCAGAT TAAGGAGGTCTCACCCGCCGGATTCGTGAGCCTCACGACGGTCGAGGGAG AGGGGAAGGAGCCCTCCACGGACCTTCGCCCGCGCCTCTTCATCAACACC ACGGGCCTCTCCGCCCTCCCTCTCGCCCGTCAAATCGGACGCCGACCAGC GGGCCTTCCTCCCTTCCCCCCACCCTCCTATGCCAAAGGCAACTACTTCC GCCTCGGTCCCCCCCCCCTCCCTTCCTCCCCTCCCACCCTCCCTCCCTCC CTCCCTCCATTTAACTGCCTCGTCTATCCGTTACCGGAAACGGCTGGGCT AGGCATTCATGCCACCATCGACCTCGGGGGGCAAGTCCGTTTCGGTCCTG ACGTGGAGTGGGTGTCAGACCCAGACGACCTCTCCGTAAACCCTTCTCGC GCCGAGTCCTTCTACGCCTCCATCCGGCGTTACTTTCCTTCCTTGCAAGA CGGACAACTCGTCGCCGACTACGCAGGAATCAGACCCAAGATCCAGAGTC CCCACGATAAGACAGCCAGCGATTTTATTTTGGAGGGCGGTCCCTCTTCT TCCGGAGGAGGGAGAGAGGGAGGGATGGAGGGTATCATCAATTGTGTGGG AATTGAGAGTCCTGGCTTGACGGCGTCGCTGGCTATTGCGGAGTGGGTGA AACAAAGAGCGATGGGGTGA back to top
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