NO27G01760.4, NO27G01760.4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01760.4
Unique Name	NO27G01760.4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1955
Alignment location	chr27:591179..594897 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:591179..594897 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G01760.4 vs.
Match: EWM20318.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 242.3 bits (617), Expect = 2.000e-60
Identity = 116/177 (65.54%), Postives = 141/177 (79.66%), Query Frame = 0

Query:    1 MGPSNSGSNDSSGSMSKFRNEVRMQKLLHAFRRGDRVAMEEHISSRAENSKLHRKLRGKDAVWEGLKEGVVYKVVTEGEAVVAKFFDDYPFHEICGNVVGTSLLGQGGGGPFYVRTLDIGKSVDNKQFIIVMEFIEADAEAIDLDEPINLYNLLYQVAFGVEQLRRTAGLQHFDLRY 178
            +G + +    S+ SMSKFRN+ RMQ L  A +RGDR  M+E IS+R+ENSK+HR LRGKDA+W+ LKE VVYKV  +GE +  K FD +PFHE CGN++ TSLLG GGGGPFYVRTLDIG+SVD K +II+ME++E DAE IDLDEP NL+ LLYQVA+GVEQLRR A LQHFDLR+
Sbjct:    4 LGRNRADLTGSTNSMSKFRNDARMQALAKAVQRGDRAGMKEIISNRSENSKMHRNLRGKDAIWDELKEDVVYKVTAQGETLAVKIFDCFPFHEACGNIIATSLLGPGGGGPFYVRTLDIGRSVDEKHYIILMEYLEHDAEEIDLDEPSNLFTLLYQVAYGVEQLRRAAHLQHFDLRF 180

The following BLAST results are available for this feature:

BLAST of NO27G01760.4 vs.

BLAST of NO27G01760.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20318.1	2.000e-60	65.54	Protein kinase, catalytic domain protein [Nannochl...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G01760	NO27G01760	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01760.4	NO27G01760.4-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01760.4.cds1	NO27G01760.4.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01760.4.cds2	NO27G01760.4.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01760.4.cds3	NO27G01760.4.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01760.4.cds4	NO27G01760.4.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01760.4.cds5	NO27G01760.4.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01760.4.cds6	NO27G01760.4.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01760.4.cds7	NO27G01760.4.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:591179..594897-
coding sequence from alignment at chr27:591179..594897-

mRNA sequence

>NO27G01760.4 ID=NO27G01760.4|Name=NO27G01760.4|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp
CAGCAACAGGGCCATAGCGTCGCAGAATGGGCCCTTCAAACTCGGGGAGC
AACGACAGTAGTGGCAGCATGTCCAAGTTCAGAAATGAGGTCCGAATGCA
AAAACTCTTGCACGCATTTCGAAGGGGGGACAGGGTTGCAATGGAGGAGC
ACATAAGCAGCCGCGCGGAGAATAGCAAGCTCCACCGGAAGCTTCGAGGA
AAGGATGCCGTATGGGAGGGATTGAAGGAGGGCGTGGTCTACAAAGTGGT
GACGGAGGGCGAGGCTGTAGTGGCTAAATTCTTCGACGACTACCCCTTCC
ATGAGATATGCGGAAATGTGGTAGGGACGAGCCTCCTGGGGCAGGGCGGC
GGTGGTCCCTTCTACGTTCGCACTCTCGACATTGGCAAGAGCGTGGATAA
CAAGCAGTTCATCATTGTCATGGAGTTCATAGAGGCCGATGCTGAGGCCA
TTGACCTCGATGAGCCCATTAATCTGTACAACCTTCTCTATCAGGTAGCC
TTTGGAGTAGAGCAGCTCCGACGCACCGCCGGCCTCCAACATTTCGATCT
CCGGTACCTCTTCCATCACTACCCCTCCGCCCATCCCTCCGTCCAACCCT
CCATCCATCCCTCCTTCCCTCTCTCCTTCCTCCCCCTCATGTCCATCTGC
TCGAGTCCTACTTCCTCCCTCACCGACGACCTCCACCTCCCTCCGTCCCT
CCCTCCCTCCCTCCCTCCCTCCGTAGCTACGACAACATCATGGTCAAAGT
CCTCCCTGAGCCCAAGGACTTGTTTAAGAATGGCATCCTCTCCTCCTTCG
TCATCAAAATCGGCGATTTCGGACAAGTACATGTCTCCTCCTTCCCTCCC
TTCCTCCCTCTCTCCCTTCTTTCCTTTTCCCCTCCCTCTCTTCCTTTCTC
CCTCCCGAACGGGTCCACTTGAATGAGCCTTGAGTGAAACACAACGGTGA
GAAAGGCACATTTCATCCGACCGACATATCCCTCCCTCCTCTCCTCCCTC
CCTCCCTTCCTCCTTTCTAGTGCGAGTTTGACTTCCCTCCCCATCCAACC
TCCTCCTCCGCCTCCTCCTCCTCCTCATCCGCAGCTAAAGCAATAGCAGT
GCCACCCCCAACACCCCCACCACCAGCGGCAGCAGCAGTAGCAGCTGTAG
GAAGCAAAAGAAAACAGAGGTGGGGCGAGGAGGAGGACAGAGAAGGTCAG
GAGAAAAGAGAGGGCAATGGCGGCAGGAAGAAGGAGGAGGAGGGGGAGGG
GGAGGGGGAGGAGGAAGAGAGGGAGGAGGAGACACGTCGGCCACGAAACG
TCGACATTCCACGGGAAGACGAATACACTCGGAAATGGGGCTCTTACCCA
CGCACCTACTCAGGCTACGACATCCAATATTTCCTCGGTACCCTCACGCC
CGTGTTGACCTCTCTGCATGGGCTGGCTTTCTACTACATTTATGGCCTGA
CCCTCGCATTCCTCCAGCCCTGCGCGTTCACCAGCGCCCAAGACCGACCG
ACGCAAATCACTACCCGGATGCCTGTTGATGTCCTTCGCTTCCTCAAGGA
CGAAGTTGCTCCCACGCTTTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAAGAGGAGTCCTTCGCCAGCCTGCCTGCATCTTGAGAACTCGTGAAGAT
GAGAGTATACTCAAGACGCTGGTCATGTGTCATCACCCCGATATGGCATT
TACGGATGTATACATCCATCTCTGTGACGATTCGGTATTTGCCCTATTTG
TCGTGCACCAAAAGAAATCCGTGAGCCGGTCGGATCCTTCCCAAACCCGC
GAGGATAATGGCATCATAAAGACGTCGGTGATATGATAGCCCCTGTATGG
CATGCACGGGCAGGAGTGATAGTCATTAGGTTTCCCTTTCAGTGTAATCA
AGAAGCGCGGGGTCTAACCCTAAAAATAAATTAATTACAAAGTACAAGAC
AAGGA

protein sequence of NO27G01760.4

>NO27G01760.4-protein ID=NO27G01760.4-protein|Name=NO27G01760.4|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MGPSNSGSNDSSGSMSKFRNEVRMQKLLHAFRRGDRVAMEEHISSRAENS
KLHRKLRGKDAVWEGLKEGVVYKVVTEGEAVVAKFFDDYPFHEICGNVVG
TSLLGQGGGGPFYVRTLDIGKSVDNKQFIIVMEFIEADAEAIDLDEPINL
YNLLYQVAFGVEQLRRTAGLQHFDLRYLFHHYPSAHPSVQPSIHPSFPLS
FLPLMSICSSPTSSLTDDLHLPPSLPPSLPPSVATTTSWSKSSLSPRTCL
RMASSPPSSSKSAISDKYMSPPSLPSSLSPFFPFPLPLFLSPSRTGPLE*

mRNA from alignment at chr27:591179..594897-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G01760.4 ID=NO27G01760.4|Name=NO27G01760.4|organism=Nannochloropsis oceanica|type=mRNA|length=3719bp|location=Sequence derived from alignment at chr27:591179..594897- (Nannochloropsis oceanica)
CAGCAACAGGGCCATAGCGTCGCAGAATGGGCCCTTCAAACTCGGGGAGC
AACGACAGTAGTGGCAGCATGTCCAAGTTCAGGTAGCTAGGAGTGAAACG
CTGGAGGAGTATGGGAAGGAGGAGGGAAAGACGGGTAGCGAGGGGAGGAG
GTAGCATTGTGCCACCCCAAGGGTGGGACTAGAGTAGCCAACATCGTTAC
TTTCACTCGAATGCATGGACGAATGCTCTCGTGTATTTCCCCTCTCATTT
TGAATGACATTACATGAGAAAAGCGAACAAGGGAGTGATGAGCTGGGAAG
AAGAAAGCTCCAAAGACTCACGTCTCCCTCCCCACACAAATGCATTTTGC
CCTGTATAGAAATGAGGTCCGAATGCAAAAACTCTTGCACGCATTTCGAA
GGGGGGACAGGGTTGCAATGGAGGAGGTAAAAAGAATGATAGGGGTACCA
AGAATCTGCACCAGGAAATTACAATCATCATTCTTCCTTCCCTCCTTCCT
TCCCTTCTTCCTTCCGTTCCTCCCTCCTGTCCCCCCCTTCCGTACTACCA
AAGCACATAAGCAGCCGCGCGGAGAATAGCAAGCTCCACCGGAAGCTTCG
AGGAAAGGATGCCGTATGGGAGGGATTGAAGGAGGGCGTGGTCTACAAAG
TACCGAGGGCGGGAGGGAGGGAGGACGGGAAGGTGGGAGATGAAGGTGGA
TGCCTCCTCGACCCCGCATTTTCTACCCATCCCGTGATTCAATTGCCTCT
ATGCAAATCAACCCTCTATCCATCCCCTCCCTCCTCCCCGTGCACAAGGT
GGTGACGGAGGGCGAGGCTGTAGTGGCTAAATTCTTCGACGACTACCCCT
TCCATGAGATATGCGGAAATGTGGTAGGGACGAGCCTCCTGGGGCAGGTG
CGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCC
CCTCCCTCCCTCCCTCCCTCCCCCCCCCCTCCCCCCCTCCCTCCCTCCCT
CCTTCCTTCCCTCCCTCCCTCCTTCGCTAGTAATAAAATCTGAAATCTGT
GGGTGGATGGAGGGGCCCTACCTCTGAGCGCCCCTGTTTCCTTTTGATGC
CTTATCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTCC
CTCCTTCCCTCTCAAGTCATCATTTCAACCCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTTTCTTAGGGCGG
CGGTGGTCCCTTCTACGTTCGCACTCTCGACATTGGCAAGAGCGTGGATA
ACAAGCAGTTCATCATTGTCATGGAGTTCATAGAGGCCGATGCTGAGGTC
CGTTTTGCCCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CGCTTACCCTCCCGGACAGTTTCTGAACTATCCTCATCCCTTCATTTACA
CCCTCCCTCCCTCCCTCCCTCCCTCAGGCCATTGACCTCGATGAGCCCAT
TAATCTGTACAACCTTCTCTATCAGGTAAGTTCCCCCCTTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTGCCCTCTGCCCTACCTCCTTTCCTTCCTCCCT
CCCTCCCACTGAGTTCATACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CCCCTCCCTCCCTCAGGTAGCCTTTGGAGTAGAGCAGCTCCGACGCACCG
CCGGCCTCCAACATTTCGATCTCCGGTACCTCTTCCATCACTACCCCTCC
GCCCATCCCTCCGTCCAACCCTCCATCCATCCCTCCTTCCCTCTCTCCTT
CCTCCCCCTCATGTCCATCTGCTCGAGTCCTACTTCCTCCCTCACCGACG
ACCTCCACCTCCCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCGTAGCT
ACGACAACATCATGGTCAAAGTCCTCCCTGAGCCCAAGGACTTGTTTAAG
AATGGCATCCTCTCCTCCTTCGTCATCAAAATCGGCGATTTCGGACAAGT
ACATGTCTCCTCCTTCCCTCCCTTCCTCCCTCTCTCCCTTCTTTCCTTTT
CCCCTCCCTCTCTTCCTTTCTCCCTCCCGAACGGGTCCACTTGAATGAGC
CTTGAGTGAAACACAACGGTGAGAAAGGCACATTTCATCCGACCGACATA
TCCCTCCCTCCTCTCCTCCCTCCCTCCCTTCCTCCTTTCTAGTGCGAGTT
TGACTTCCCTCCCCATCCAACCTCCTCCTCCGCCTCCTCCTCCTCCTCAT
CCGCAGCTAAAGCAATAGCAGTGCCACCCCCAACACCCCCACCACCAGCG
GCAGCAGCAGTAGCAGCTGTAGGAAGCAAAAGAAAACAGAGGTGGGGCGA
GGAGGAGGACAGAGAAGGTCAGGAGAAAAGAGAGGGCAATGGCGGCAGGA
AGAAGGAGGAGGAGGGGGAGGGGGAGGGGGAGGAGGAAGAGAGGGAGGAG
GAGACACGTCGGCCACGAAACGTCGACATTCCACGGGAAGACGAATACAC
TCGGAAATGGGGCTCTTACCCACGCACCTACTCAGGTATTTATCTATCCT
TCCCTCCTGCCCTCCTCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCGTC
ATGGCAGGCCTCCCTCTCTTTCCTAGTCTTACCCTTCCTCTCTATCCAGC
TCCCTCCCTCCCTTCCTCCCTCCCTCCTCCCCCTCCTCGAAAGGTTACGA
CATATAGTATTTTCTCGAAATCCTTACTCCCGTGCTATCCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCAGGCTACG
ACATCCAATATTTCCTCGGTACCCTCACGCCCGTGTTGACCTCTCTGCAT
GGGCTGGCTTTCTACTACATTTATGGCCTGACCCTCGCATTCCTCCAGCC
CTGCGCGTTCACCAGCGCCCAAGACCGGTATGCCCCTCCCCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCCTTCTCCCTCATCTTCCCTCCCTCATCTCCT
ATTCCTCGAAAATTTGAGCGCTGCCCTGGAGCTGTTCTGTGATGTCTCAT
CCCTCTTTCCCTCCCTCCTTCCCGCCCTCCCTCCCTTCCTCCCTCCTGCC
CTCCCTCTAGACCGACGCAAATCACTACCCGGATGCCTGTTGATGTCCTT
CGCTTCCTCAAGGACGAAGTTGCTCCCACGCTTTAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGAAGAGGAGTCCTTCGCCAGCCTGCCTGCATCTTGA
GAACTCGTGAAGATGAGAGTATACTCAAGACGCTGGTCATGTGTCATCAC
CCCGATATGGCATTTACGGATGTATACATCCATCTCTGTGACGATTCGGT
ATTTGCCCTATTTGTCGTGCACCAAAAGAAATCCGTGAGCCGGTCGGATC
CTTCCCAAACCCGCGAGGATAATGGCATCATAAAGACGTCGGTGATATGA
TAGCCCCTGTATGGCATGCACGGGCAGGAGTGATAGTCATTAGGTTTCCC
TTTCAGTGTAATCAAGAAGCGCGGGGTCTAACCCTAAAAATAAATTAATT
ACAAAGTACAAGACAAGGA

Coding sequence (CDS) from alignment at chr27:591179..594897-

>NO27G01760.4 ID=NO27G01760.4|Name=NO27G01760.4|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr27:591179..594897- (Nannochloropsis oceanica)
ATGGGCCCTTCAAACTCGGGGAGCAACGACAGTAGTGGCAGCATGTCCAA
GTTCAGAAATGAGGTCCGAATGCAAAAACTCTTGCACGCATTTCGAAGGG
GGGACAGGGTTGCAATGGAGGAGCACATAAGCAGCCGCGCGGAGAATAGC
AAGCTCCACCGGAAGCTTCGAGGAAAGGATGCCGTATGGGAGGGATTGAA
GGAGGGCGTGGTCTACAAAGTGGTGACGGAGGGCGAGGCTGTAGTGGCTA
AATTCTTCGACGACTACCCCTTCCATGAGATATGCGGAAATGTGGTAGGG
ACGAGCCTCCTGGGGCAGGGCGGCGGTGGTCCCTTCTACGTTCGCACTCT
CGACATTGGCAAGAGCGTGGATAACAAGCAGTTCATCATTGTCATGGAGT
TCATAGAGGCCGATGCTGAGGCCATTGACCTCGATGAGCCCATTAATCTG
TACAACCTTCTCTATCAGGTAGCCTTTGGAGTAGAGCAGCTCCGACGCAC
CGCCGGCCTCCAACATTTCGATCTCCGGTACCTCTTCCATCACTACCCCT
CCGCCCATCCCTCCGTCCAACCCTCCATCCATCCCTCCTTCCCTCTCTCC
TTCCTCCCCCTCATGTCCATCTGCTCGAGTCCTACTTCCTCCCTCACCGA
CGACCTCCACCTCCCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCGTAG
CTACGACAACATCATGGTCAAAGTCCTCCCTGAGCCCAAGGACTTGTTTA
AGAATGGCATCCTCTCCTCCTTCGTCATCAAAATCGGCGATTTCGGACAA
GTACATGTCTCCTCCTTCCCTCCCTTCCTCCCTCTCTCCCTTCTTTCCTT
TTCCCCTCCCTCTCTTCCTTTCTCCCTCCCGAACGGGTCCACTTGAATGA

Synonyms

Publications