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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr27 | genome | chr27:591179..594897 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G01760.1 vs.
Match: EWM20318.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana]) HSP 1 Score: 458.0 bits (1177), Expect = 3.000e-125 Identity = 243/392 (61.99%), Postives = 290/392 (73.98%), Query Frame = 0
Query: 1 MGPSNSGSNDSSGSMSKFRNEVRMQKLLHAFRRGDRVAMEEHISSRAENSKLHRKLRGKDAVWEGLKEGVVYKVVTEGEAVVAKFFDDYPFHEICGNVVGTSLLGQGGGGPFYVRTLDIGKSVDNKQFIIVMEFIEADAEAIDLDEPINLYNLLYQVAFGVEQLRRTAGLQHFDLRYDNIMVKVLPEPKDLFKNGILSSFVIKIGDFGQCEFDFPPHPTSSSASSSSSSAAKAIAVPPPTPPPPAAAAVAAVGSKRKQRWGEEEDREGQEKREGNGGRKKEEEGEGEGEEEEREEETRRPRNVDIPREDEYTRKWGSYPRTYSGYDIQYFLGTLTPVLTSLHGLAFYYIYGLTLAFLQPCAFTSAQDRPTQITTRMPVDVLRFLKDEVAPTL 393
+G + + S+ SMSKFRN+ RMQ L A +RGDR M+E IS+R+ENSK+HR LRGKDA+W+ LKE VVYKV +GE + K FD +PFHE CGN++ TSLLG GGGGPFYVRTLDIG+SVD K +II+ME++E DAE IDLDEP NL+ LLYQVA+GVEQLRR A LQHFDLR+DNIMVK+LPEPKD+F+NG+LSSF++KIGDFGQCEFDF P P+SSS+SSSSSS++ + + + P V A G+ + GNG RP N DIPRE E+TRKWG+YPRTY+GYDIQYFLGTLTPVL SLHGL FYYIY LTLAFLQPC+FTSAQDRP IT+RMPVDVLRFLK+E+ PTL
Sbjct: 4 LGRNRADLTGSTNSMSKFRNDARMQALAKAVQRGDRAGMKEIISNRSENSKMHRNLRGKDAIWDELKEDVVYKVTAQGETLAVKIFDCFPFHEACGNIIATSLLGPGGGGPFYVRTLDIGRSVDEKHYIILMEYLEHDAEEIDLDEPSNLFTLLYQVAYGVEQLRRAAHLQHFDLRFDNIMVKLLPEPKDIFQNGVLSSFIVKIGDFGQCEFDF-PFPSSSSSSSSSSSSSTSTSTSSTSCCPQYLPQVEA----------------GKAQCNGNG-------------NAAAVTAPHRPINTDIPREPEFTRKWGAYPRTYTGYDIQYFLGTLTPVLGSLHGLDFYYIYKLTLAFLQPCSFTSAQDRPVHITSRMPVDVLRFLKEEIMPTL 365
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G01760.1 ID=NO27G01760.1|Name=NO27G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp
CAGCAACAGGGCCATAGCGTCGCAGAATGGGCCCTTCAAACTCGGGGAGC
AACGACAGTAGTGGCAGCATGTCCAAGTTCAGAAATGAGGTCCGAATGCA
AAAACTCTTGCACGCATTTCGAAGGGGGGACAGGGTTGCAATGGAGGAGC
ACATAAGCAGCCGCGCGGAGAATAGCAAGCTCCACCGGAAGCTTCGAGGA
AAGGATGCCGTATGGGAGGGATTGAAGGAGGGCGTGGTCTACAAAGTGGT
GACGGAGGGCGAGGCTGTAGTGGCTAAATTCTTCGACGACTACCCCTTCC
ATGAGATATGCGGAAATGTGGTAGGGACGAGCCTCCTGGGGCAGGGCGGC
GGTGGTCCCTTCTACGTTCGCACTCTCGACATTGGCAAGAGCGTGGATAA
CAAGCAGTTCATCATTGTCATGGAGTTCATAGAGGCCGATGCTGAGGCCA
TTGACCTCGATGAGCCCATTAATCTGTACAACCTTCTCTATCAGGTAGCC
TTTGGAGTAGAGCAGCTCCGACGCACCGCCGGCCTCCAACATTTCGATCT
CCGCTACGACAACATCATGGTCAAAGTCCTCCCTGAGCCCAAGGACTTGT
TTAAGAATGGCATCCTCTCCTCCTTCGTCATCAAAATCGGCGATTTCGGA
CAATGCGAGTTTGACTTCCCTCCCCATCCAACCTCCTCCTCCGCCTCCTC
CTCCTCCTCATCCGCAGCTAAAGCAATAGCAGTGCCACCCCCAACACCCC
CACCACCAGCGGCAGCAGCAGTAGCAGCTGTAGGAAGCAAAAGAAAACAG
AGGTGGGGCGAGGAGGAGGACAGAGAAGGTCAGGAGAAAAGAGAGGGCAA
TGGCGGCAGGAAGAAGGAGGAGGAGGGGGAGGGGGAGGGGGAGGAGGAAG
AGAGGGAGGAGGAGACACGTCGGCCACGAAACGTCGACATTCCACGGGAA
GACGAATACACTCGGAAATGGGGCTCTTACCCACGCACCTACTCAGGCTA
CGACATCCAATATTTCCTCGGTACCCTCACGCCCGTGTTGACCTCTCTGC
ATGGGCTGGCTTTCTACTACATTTATGGCCTGACCCTCGCATTCCTCCAG
CCCTGCGCGTTCACCAGCGCCCAAGACCGACCGACGCAAATCACTACCCG
GATGCCTGTTGATGTCCTTCGCTTCCTCAAGGACGAAGTTGCTCCCACGC
TTTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGGAGTCCTTCGC
CAGCCTGCCTGCATCTTGAGAACTCGTGAAGATGAGAGTATACTCAAGAC
GCTGGTCATGTGTCATCACCCCGATATGGCATTTACGGATGTATACATCC
ATCTCTGTGACGATTCGGTATTTGCCCTATTTGTCGTGCACCAAAAGAAA
TCCGTGAGCCGGTCGGATCCTTCCCAAACCCGCGAGGATAATGGCATCAT
AAAGACGTCGGTGATATGATAGCCCCTGTATGGCATGCACGGGCAGGAGT
GATAGTCATTAGGTTTCCCTTTCAGTGTAATCAAGAAGCGCGGGGTCTAA
CCCTAAAAATAAATTAATTACAAAGTACAAGACAAGGA back to topprotein sequence of NO27G01760.1 >NO27G01760.1-protein ID=NO27G01760.1-protein|Name=NO27G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MGPSNSGSNDSSGSMSKFRNEVRMQKLLHAFRRGDRVAMEEHISSRAENS
KLHRKLRGKDAVWEGLKEGVVYKVVTEGEAVVAKFFDDYPFHEICGNVVG
TSLLGQGGGGPFYVRTLDIGKSVDNKQFIIVMEFIEADAEAIDLDEPINL
YNLLYQVAFGVEQLRRTAGLQHFDLRYDNIMVKVLPEPKDLFKNGILSSF
VIKIGDFGQCEFDFPPHPTSSSASSSSSSAAKAIAVPPPTPPPPAAAAVA
AVGSKRKQRWGEEEDREGQEKREGNGGRKKEEEGEGEGEEEEREEETRRP
RNVDIPREDEYTRKWGSYPRTYSGYDIQYFLGTLTPVLTSLHGLAFYYIY
GLTLAFLQPCAFTSAQDRPTQITTRMPVDVLRFLKDEVAPTL* back to topmRNA from alignment at chr27:591179..594897- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G01760.1 ID=NO27G01760.1|Name=NO27G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3719bp|location=Sequence derived from alignment at chr27:591179..594897- (Nannochloropsis oceanica)
CAGCAACAGGGCCATAGCGTCGCAGAATGGGCCCTTCAAACTCGGGGAGC
AACGACAGTAGTGGCAGCATGTCCAAGTTCAGGTAGCTAGGAGTGAAACG
CTGGAGGAGTATGGGAAGGAGGAGGGAAAGACGGGTAGCGAGGGGAGGAG
GTAGCATTGTGCCACCCCAAGGGTGGGACTAGAGTAGCCAACATCGTTAC
TTTCACTCGAATGCATGGACGAATGCTCTCGTGTATTTCCCCTCTCATTT
TGAATGACATTACATGAGAAAAGCGAACAAGGGAGTGATGAGCTGGGAAG
AAGAAAGCTCCAAAGACTCACGTCTCCCTCCCCACACAAATGCATTTTGC
CCTGTATAGAAATGAGGTCCGAATGCAAAAACTCTTGCACGCATTTCGAA
GGGGGGACAGGGTTGCAATGGAGGAGGTAAAAAGAATGATAGGGGTACCA
AGAATCTGCACCAGGAAATTACAATCATCATTCTTCCTTCCCTCCTTCCT
TCCCTTCTTCCTTCCGTTCCTCCCTCCTGTCCCCCCCTTCCGTACTACCA
AAGCACATAAGCAGCCGCGCGGAGAATAGCAAGCTCCACCGGAAGCTTCG
AGGAAAGGATGCCGTATGGGAGGGATTGAAGGAGGGCGTGGTCTACAAAG
TACCGAGGGCGGGAGGGAGGGAGGACGGGAAGGTGGGAGATGAAGGTGGA
TGCCTCCTCGACCCCGCATTTTCTACCCATCCCGTGATTCAATTGCCTCT
ATGCAAATCAACCCTCTATCCATCCCCTCCCTCCTCCCCGTGCACAAGGT
GGTGACGGAGGGCGAGGCTGTAGTGGCTAAATTCTTCGACGACTACCCCT
TCCATGAGATATGCGGAAATGTGGTAGGGACGAGCCTCCTGGGGCAGGTG
CGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCC
CCTCCCTCCCTCCCTCCCTCCCCCCCCCCTCCCCCCCTCCCTCCCTCCCT
CCTTCCTTCCCTCCCTCCCTCCTTCGCTAGTAATAAAATCTGAAATCTGT
GGGTGGATGGAGGGGCCCTACCTCTGAGCGCCCCTGTTTCCTTTTGATGC
CTTATCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTCC
CTCCTTCCCTCTCAAGTCATCATTTCAACCCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTTTCTTAGGGCGG
CGGTGGTCCCTTCTACGTTCGCACTCTCGACATTGGCAAGAGCGTGGATA
ACAAGCAGTTCATCATTGTCATGGAGTTCATAGAGGCCGATGCTGAGGTC
CGTTTTGCCCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CGCTTACCCTCCCGGACAGTTTCTGAACTATCCTCATCCCTTCATTTACA
CCCTCCCTCCCTCCCTCCCTCCCTCAGGCCATTGACCTCGATGAGCCCAT
TAATCTGTACAACCTTCTCTATCAGGTAAGTTCCCCCCTTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTGCCCTCTGCCCTACCTCCTTTCCTTCCTCCCT
CCCTCCCACTGAGTTCATACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CCCCTCCCTCCCTCAGGTAGCCTTTGGAGTAGAGCAGCTCCGACGCACCG
CCGGCCTCCAACATTTCGATCTCCGGTACCTCTTCCATCACTACCCCTCC
GCCCATCCCTCCGTCCAACCCTCCATCCATCCCTCCTTCCCTCTCTCCTT
CCTCCCCCTCATGTCCATCTGCTCGAGTCCTACTTCCTCCCTCACCGACG
ACCTCCACCTCCCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCGTAGCT
ACGACAACATCATGGTCAAAGTCCTCCCTGAGCCCAAGGACTTGTTTAAG
AATGGCATCCTCTCCTCCTTCGTCATCAAAATCGGCGATTTCGGACAAGT
ACATGTCTCCTCCTTCCCTCCCTTCCTCCCTCTCTCCCTTCTTTCCTTTT
CCCCTCCCTCTCTTCCTTTCTCCCTCCCGAACGGGTCCACTTGAATGAGC
CTTGAGTGAAACACAACGGTGAGAAAGGCACATTTCATCCGACCGACATA
TCCCTCCCTCCTCTCCTCCCTCCCTCCCTTCCTCCTTTCTAGTGCGAGTT
TGACTTCCCTCCCCATCCAACCTCCTCCTCCGCCTCCTCCTCCTCCTCAT
CCGCAGCTAAAGCAATAGCAGTGCCACCCCCAACACCCCCACCACCAGCG
GCAGCAGCAGTAGCAGCTGTAGGAAGCAAAAGAAAACAGAGGTGGGGCGA
GGAGGAGGACAGAGAAGGTCAGGAGAAAAGAGAGGGCAATGGCGGCAGGA
AGAAGGAGGAGGAGGGGGAGGGGGAGGGGGAGGAGGAAGAGAGGGAGGAG
GAGACACGTCGGCCACGAAACGTCGACATTCCACGGGAAGACGAATACAC
TCGGAAATGGGGCTCTTACCCACGCACCTACTCAGGTATTTATCTATCCT
TCCCTCCTGCCCTCCTCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCGTC
ATGGCAGGCCTCCCTCTCTTTCCTAGTCTTACCCTTCCTCTCTATCCAGC
TCCCTCCCTCCCTTCCTCCCTCCCTCCTCCCCCTCCTCGAAAGGTTACGA
CATATAGTATTTTCTCGAAATCCTTACTCCCGTGCTATCCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCAGGCTACG
ACATCCAATATTTCCTCGGTACCCTCACGCCCGTGTTGACCTCTCTGCAT
GGGCTGGCTTTCTACTACATTTATGGCCTGACCCTCGCATTCCTCCAGCC
CTGCGCGTTCACCAGCGCCCAAGACCGGTATGCCCCTCCCCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCCTTCTCCCTCATCTTCCCTCCCTCATCTCCT
ATTCCTCGAAAATTTGAGCGCTGCCCTGGAGCTGTTCTGTGATGTCTCAT
CCCTCTTTCCCTCCCTCCTTCCCGCCCTCCCTCCCTTCCTCCCTCCTGCC
CTCCCTCTAGACCGACGCAAATCACTACCCGGATGCCTGTTGATGTCCTT
CGCTTCCTCAAGGACGAAGTTGCTCCCACGCTTTAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGAAGAGGAGTCCTTCGCCAGCCTGCCTGCATCTTGA
GAACTCGTGAAGATGAGAGTATACTCAAGACGCTGGTCATGTGTCATCAC
CCCGATATGGCATTTACGGATGTATACATCCATCTCTGTGACGATTCGGT
ATTTGCCCTATTTGTCGTGCACCAAAAGAAATCCGTGAGCCGGTCGGATC
CTTCCCAAACCCGCGAGGATAATGGCATCATAAAGACGTCGGTGATATGA
TAGCCCCTGTATGGCATGCACGGGCAGGAGTGATAGTCATTAGGTTTCCC
TTTCAGTGTAATCAAGAAGCGCGGGGTCTAACCCTAAAAATAAATTAATT
ACAAAGTACAAGACAAGGA back to topCoding sequence (CDS) from alignment at chr27:591179..594897- >NO27G01760.1 ID=NO27G01760.1|Name=NO27G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr27:591179..594897- (Nannochloropsis oceanica)
ATGGGCCCTTCAAACTCGGGGAGCAACGACAGTAGTGGCAGCATGTCCAA
GTTCAGAAATGAGGTCCGAATGCAAAAACTCTTGCACGCATTTCGAAGGG
GGGACAGGGTTGCAATGGAGGAGCACATAAGCAGCCGCGCGGAGAATAGC
AAGCTCCACCGGAAGCTTCGAGGAAAGGATGCCGTATGGGAGGGATTGAA
GGAGGGCGTGGTCTACAAAGTGGTGACGGAGGGCGAGGCTGTAGTGGCTA
AATTCTTCGACGACTACCCCTTCCATGAGATATGCGGAAATGTGGTAGGG
ACGAGCCTCCTGGGGCAGGGCGGCGGTGGTCCCTTCTACGTTCGCACTCT
CGACATTGGCAAGAGCGTGGATAACAAGCAGTTCATCATTGTCATGGAGT
TCATAGAGGCCGATGCTGAGGCCATTGACCTCGATGAGCCCATTAATCTG
TACAACCTTCTCTATCAGGTAGCCTTTGGAGTAGAGCAGCTCCGACGCAC
CGCCGGCCTCCAACATTTCGATCTCCGCTACGACAACATCATGGTCAAAG
TCCTCCCTGAGCCCAAGGACTTGTTTAAGAATGGCATCCTCTCCTCCTTC
GTCATCAAAATCGGCGATTTCGGACAATGCGAGTTTGACTTCCCTCCCCA
TCCAACCTCCTCCTCCGCCTCCTCCTCCTCCTCATCCGCAGCTAAAGCAA
TAGCAGTGCCACCCCCAACACCCCCACCACCAGCGGCAGCAGCAGTAGCA
GCTGTAGGAAGCAAAAGAAAACAGAGGTGGGGCGAGGAGGAGGACAGAGA
AGGTCAGGAGAAAAGAGAGGGCAATGGCGGCAGGAAGAAGGAGGAGGAGG
GGGAGGGGGAGGGGGAGGAGGAAGAGAGGGAGGAGGAGACACGTCGGCCA
CGAAACGTCGACATTCCACGGGAAGACGAATACACTCGGAAATGGGGCTC
TTACCCACGCACCTACTCAGGCTACGACATCCAATATTTCCTCGGTACCC
TCACGCCCGTGTTGACCTCTCTGCATGGGCTGGCTTTCTACTACATTTAT
GGCCTGACCCTCGCATTCCTCCAGCCCTGCGCGTTCACCAGCGCCCAAGA
CCGACCGACGCAAATCACTACCCGGATGCCTGTTGATGTCCTTCGCTTCC
TCAAGGACGAAGTTGCTCCCACGCTTTAG back to top
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