NO27G01670.1, NO27G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01670.1
Unique NameNO27G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1260
Alignment locationchr27:554295..556914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:554295..556914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01670.1 vs.
Match: OQR82296.1 (vesicle-trafficking protein SEC22b [Achlya hypogyna])

HSP 1 Score: 263.5 bits (672), Expect = 6.200e-67
Identity = 127/223 (56.95%), Postives = 164/223 (73.54%), Query Frame = 0 
Query:    1 MIFLTMAARVQDGLLLVASTDAAHEMSEQMDVYKSQAKQLLRKLNARSPAKQIIESGPCSFFYLLDQNICYLTLADKGYPRKLLFSYLEEIKDGFIQELSRDFGPEWKRQVETAARPYAFIKFDKFIQSKRRDYLDPTSRRNTSKLTEDLADISSIMKKNIQEVLNRGERLDNISQTSSKLVNDSKKYKWGAKKLSMMALYQQYAPFLVLGGIALVVIYLKFF 224
            M  LT  ARV DG++LVAS ++A + ++ +D YK Q KQ+++KLN RSP K  IESGP  F YL++   CYLT +DK YP++L F YLEEI  GF+ EL RD G  W+  V T ARPYAFIKFDKFIQ KR++Y DP+S +N SKL  DLADI ++M+KNIQEVLNRGE +D +SQ SS L + SK +KWGAKKLS+ A+YQ+Y P + +G   ++V+Y KFF
Sbjct:    1 MPILTFIARVSDGMILVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPTKCSIESGPYCFHYLIEDGNCYLTFSDKNYPKRLAFLYLEEIHVGFVDELQRDHGDNWRNTVTTVARPYAFIKFDKFIQRKRKEYTDPSSSQNMSKLNNDLADIHNVMRKNIQEVLNRGEAIDRVSQMSSNLADRSKDFKWGAKKLSLQAMYQKYGPLVAIGLFVVLVLYFKFF 223
The following BLAST results are available for this feature:
BLAST of NO27G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900100011001200Expect = 6.20e-67 / Id = 56.95SequenceOQR82296.1
Match NameE-valueIdentityDescription
OQR82296.16.200e-6756.95vesicle-trafficking protein SEC22b [Achlya hypogyn... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01670NO27G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01670.1NO27G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01670.1.cds1NO27G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds2NO27G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds3NO27G01670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds4NO27G01670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds5NO27G01670.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds6NO27G01670.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds7NO27G01670.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01670.1.cds8NO27G01670.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01670.1 ID=NO27G01670.1|Name=NO27G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
CAGCTACAGGTAGCCGGTACCAAGTCTCAACTCCAGGGCAACGGGCCGCG
TGCTTCTCTTCGTCTTCCCCACGCGCCGCCTGATCAGGCATCAGGGACCA
GCCCTTTGAGGAGATGATCTTCCTTACCATGGCTGCGCGGGTGCAGGACG
GCCTCTTGCTGGTGGCCTCCACAGACGCCGCTCACGAGATGTCCGAGCAA
ATGGACGTGTACAAAAGTCAGGCCAAACAGCTGCTACGAAAACTCAACGC
ACGCTCACCTGCAAAACAAATTATTGAGAGTGGCCCTTGCTCCTTCTTTT
ACTTGCTCGACCAGAACATCTGTTACCTGACCCTAGCCGACAAGGGCTAC
CCACGCAAGCTCCTCTTCTCCTACCTCGAGGAAATCAAGGACGGCTTCAT
TCAAGAATTGTCGCGAGATTTCGGCCCTGAGTGGAAGAGGCAGGTCGAGA
CAGCCGCCCGACCCTACGCCTTCATCAAGTTCGACAAGTTCATTCAAAGC
AAACGCCGCGATTACCTCGACCCAACATCACGCCGGAACACCTCCAAGCT
CACAGAAGACCTGGCAGACATCAGCTCGATCATGAAGAAAAACATCCAAG
AAGTCCTCAACCGTGGCGAACGGCTTGACAACATCTCCCAGACCTCTTCC
AAGCTCGTGAATGACTCCAAGAAATACAAATGGGGCGCGAAGAAACTTTC
CATGATGGCCCTCTATCAACAGTACGCGCCTTTCCTCGTCCTGGGCGGTA
TCGCCCTCGTCGTTATTTACCTTAAATTCTTTTGGTGAGAAGAAGGGGGA
AATTAACACTTTCCCTCCCTCCCTTTCTGTCTTCCTGTCTGTCTCTCCCT
CTAACCGACCATCAGTAGAATGACCCGCATTCTAGAAGGAGGGAAAGGAA
ACAAAGAAACACTCAAACGGAGCATGCCTCTGAGGACGAGGAGCCGGTTG
AGGTGTGTCTCGGTGTTGGCCTTTTTTCTCTTTCTGTCTTCTTTTTCCTT
TTCTTTCTTTTCCCTTCTTTTATGATTTCTCCGTCTGTGAGCCAAGAAAG
ACGCATGGCTCGAGAAGGGAAAGGAGAAGGAAGCAGGAGGGAGAGTGAAA
GAGAAGGGCAAGGATGGGAGATGAAGAATGAAAGAGAAGAGTCTGCAGTC
AACGTATTCTTAAAGCGAAATCATCGACCTAATACCGTTAAAAGAGATCA
AGGCTTGTGACGTCCCGCCAAAATGATTTTAGTGATTTTACATCCGCCCA
ACAAAAAGGT
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protein sequence of NO27G01670.1

>NO27G01670.1-protein ID=NO27G01670.1-protein|Name=NO27G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MIFLTMAARVQDGLLLVASTDAAHEMSEQMDVYKSQAKQLLRKLNARSPA
KQIIESGPCSFFYLLDQNICYLTLADKGYPRKLLFSYLEEIKDGFIQELS
RDFGPEWKRQVETAARPYAFIKFDKFIQSKRRDYLDPTSRRNTSKLTEDL
ADISSIMKKNIQEVLNRGERLDNISQTSSKLVNDSKKYKWGAKKLSMMAL
YQQYAPFLVLGGIALVVIYLKFFW*
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mRNA from alignment at chr27:554295..556914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01670.1 ID=NO27G01670.1|Name=NO27G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2620bp|location=Sequence derived from alignment at chr27:554295..556914- (Nannochloropsis oceanica)
CAGCTACAGGTAGCCGGTACCAAGTCTCAACTCCAGGGCAACGGGCCGCG
TGCTTCTCTTCGTCTTCCCCACGCGCCGCCTGATCAGGTAGGCAACCACC
CTCCATCCCTCCATTCCTGGCGTCATTCTTGAATTTGTCCTCCTTCCTCC
TGATCCCCACTACACTCCATAGGCATCAGGGACCAGCCCTTTGAGGAGAT
GATCTTCCTTACCATGGCTGCGCGGGTGCAGGACGGCCTCTTGCTGGTAC
GTTTATCATCACGCACGGAACTTGCGTACTCCTCCTTCCCTCGCTTCTTA
CCCTCCACCCCTCCCTCCCTCCCTCCCTCGCTCCCCTCGCCCCCAGGTGG
CCTCCACAGACGCCGCTCACGAGATGTCCGAGCAAATGGACGTGTACAAA
AGTCAGGCCAAACAGCTGCTACGAAAACTCAACGCACGCTCACCTGCAAA
ACAAATTATTGAGAGTGGCCCTTGCTCCTTCTTGTACGTAAATGAAGAGG
CGGAAAGGAAGGGAAAAAGCTAACTACTAATAGATTCAGTAGATATGGCC
TATTGTATGATAGTTAGGACAGATAGATATGGAAGATATGCTAGACGTCT
CCGCCGTTCTAAACTTTGAACTCTTGAGCGTTATTTCTCGTCATCGCCTC
CTCTCCTCTCCCTCCCTCCCTCCCTCCCCCCCTTCCCCCCTCCCCACAGT
TACTTGCTCGACCAGAACATCTGTTACCTGACCCTAGCCGACAAGGGCTA
CCCACGCAAGCTCCTCTTCTCCTACCTCGAGGAAATCAAGGACGGCTTCA
TTCAAGAATTGTCGCGAGATTTCGGCCCTGAGTAAGTCCCTTCCTTCTTC
CCTACCTACCTCCCTCCGTTCCCTCCTCCTTTCATTCATCCTTCCTCGTC
GCCTAATAAGGATATATTAGCATGTATGGTTGTTACTCATGTATATTACC
TACATATATTAATATATGTCCAGGTGGAAGAGGCAGGTCGAGACAGCCGC
CCGACCCTACGCCTTCATCAAGTTCGGTGGGTGCCCTCCCTCACTTCCTC
CTTTCTTCCTTCCCTCCCTCCTCCTTCGAATCTTCTTCGAATCTCCTTTG
AATCTCCTTCGAATCTCCTTGCCTTTAATCACCTCCACGTCCCATCTCTC
TCTGTCTCCCATCCCCTTGCATTTATGCTTCCTCTTTCCCCCCTCCCTCC
CTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGACAAGTTCAT
TCAAAGCAAACGCCGCGATTACCTCGACCCAACATCACGCCGGAACACCT
CCAAGGTAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGACGAACGGGTGACTGACCAGGGTTTCCAGAAAG
TTCCCTCACCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTAGCT
CACAGAAGACCTGGCAGACATCAGCTCGATCATGAAGAAAAACATCCAAG
AAGTCCTCAACCGTGGCGAACGGCTTGACAGTGCGTCCCCTCCTTCCCTC
CTTTCCCCCATCCCCCCCTCCTTCCCTCGCGGCATCTAACGCTCTCTTTG
ATCACAAATGTATCAACCCGTCATATCATCGCCTCCAGTTTCATCAAACA
TAAATAAGGCCCTAGGGCCGCCCTCCCTTTCCAACCCCTTCTCGATTAAT
TGTTTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCA
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGACATCTCCCAGACCTC
TTCCAAGCTCGTGAATGACTCCAAGAAATACAAATGGGGCGCGAAGAAAC
TTTCCATGATGGTGGGGCAAGAGAAAGGGATGGAGAAAGGGAGGGAAGAT
GAAAGCCACACTCATTTGATTATGTGGGCGCCGTATTCCTCAAGGTTGAT
TGCTCTGCTCACCTTTCTCCCTCTATCCCTCCCTCCATTTCTCCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCATTCCTCCTTCCTTCCCTCCCTCCCTCC
CTCTCTTCCTCCTTCAGGCCCTCTATCAACAGTACGCGCCTTTCCTCGTC
CTGGGCGGTATCGCCCTCGTCGTTATTTACCTTAAATTCTTTTGGTGAGA
AGAAGGGGGAAATTAACACTTTCCCTCCCTCCCTTTCTGTCTTCCTGTCT
GTCTCTCCCTCTAACCGACCATCAGTAGAATGACCCGCATTCTAGAAGGA
GGGAAAGGAAACAAAGAAACACTCAAACGGAGCATGCCTCTGAGGACGAG
GAGCCGGTTGAGGTGTGTCTCGGTGTTGGCCTTTTTTCTCTTTCTGTCTT
CTTTTTCCTTTTCTTTCTTTTCCCTTCTTTTATGATTTCTCCGTCTGTGA
GCCAAGAAAGACGCATGGCTCGAGAAGGGAAAGGAGAAGGAAGCAGGAGG
GAGAGTGAAAGAGAAGGGCAAGGATGGGAGATGAAGAATGAAAGAGAAGA
GTCTGCAGTCAACGTATTCTTAAAGCGAAATCATCGACCTAATACCGTTA
AAAGAGATCAAGGCTTGTGACGTCCCGCCAAAATGATTTTAGTGATTTTA
CATCCGCCCAACAAAAAGGT
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Coding sequence (CDS) from alignment at chr27:554295..556914-

>NO27G01670.1 ID=NO27G01670.1|Name=NO27G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr27:554295..556914- (Nannochloropsis oceanica)
ATGATCTTCCTTACCATGGCTGCGCGGGTGCAGGACGGCCTCTTGCTGGT
GGCCTCCACAGACGCCGCTCACGAGATGTCCGAGCAAATGGACGTGTACA
AAAGTCAGGCCAAACAGCTGCTACGAAAACTCAACGCACGCTCACCTGCA
AAACAAATTATTGAGAGTGGCCCTTGCTCCTTCTTTTACTTGCTCGACCA
GAACATCTGTTACCTGACCCTAGCCGACAAGGGCTACCCACGCAAGCTCC
TCTTCTCCTACCTCGAGGAAATCAAGGACGGCTTCATTCAAGAATTGTCG
CGAGATTTCGGCCCTGAGTGGAAGAGGCAGGTCGAGACAGCCGCCCGACC
CTACGCCTTCATCAAGTTCGACAAGTTCATTCAAAGCAAACGCCGCGATT
ACCTCGACCCAACATCACGCCGGAACACCTCCAAGCTCACAGAAGACCTG
GCAGACATCAGCTCGATCATGAAGAAAAACATCCAAGAAGTCCTCAACCG
TGGCGAACGGCTTGACAACATCTCCCAGACCTCTTCCAAGCTCGTGAATG
ACTCCAAGAAATACAAATGGGGCGCGAAGAAACTTTCCATGATGGCCCTC
TATCAACAGTACGCGCCTTTCCTCGTCCTGGGCGGTATCGCCCTCGTCGT
TATTTACCTTAAATTCTTTTGGTGA
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Synonyms
Publications