NO27G01580.1, NO27G01580.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01580.1
Unique Name	NO27G01580.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2238
Alignment location	chr27:525310..528041 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:525310..528041 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G01580.1 vs.
Match: XP_005854957.1 (zinc metalloendopeptidase, partial [Nannochloropsis gaditana CCMP526]; EKU21397.1 zinc metalloendopeptidase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 287.3 bits (734), Expect = 9.600e-74
Identity = 161/334 (48.20%), Postives = 199/334 (59.58%), Query Frame = 0

Query:  214 PSLSPSTLPSSIPSLSPSTLPSSAPASTFNITLINVNPAQTGLDAFMSSAQARWQRIITAEAEDINLGASVDLTAGRF-PSFS-YSGPVDDIIIFYALTTLPPLVLGSAGPTYLRGDNAQPIAGTMRFSIDYFNDGDITEDVILHEMAHVLGFGTTWRSKGCLSKECDENTPAPVTYTCANGLAQYAMIETCTTLFPDLTIETSTGRPGSDCGHWAEAFYKTELMTPTTAASLESSLLSRFTIGAMADIWGSVNYAEADTFAC----TAGISSSPQAQSDNAPISEMLYPVNGGEVILTMAQAGQTIYDYQLTGLSEEERQAVLDALANLGKTI 542
            P+ +  T  +  P+ SP+  P+  P S FNITLIN  P  T +D+ M SA+ARW  II A    +    + DLT GRF P F  Y   VDDIIIFY L TL P VLGSAGPT++R  + QP A TM FS  +F+  ++TED ILHEMAH LGFG  W   GC S  C   + A V+Y C  G+AQY          PDL IETS+G  GSDCGHW EA Y  ELMTP +        LSRFTIGAM+DIWG VN  EA+ F C     A + S PQ        S +L PVN  + ++  A  G+T+Y++QL  L+  ERQ V+DALA +GKT+
Sbjct:    1 PTTAAPTGATPAPTPSPTIAPTPQPTSLFNITLINAQPNDTRMDSMMISAKARWTGIILATPSSVPFSGTDDLTGGRFLPEFGPYYSAVDDIIIFYRLATLSPGVLGSAGPTFVRTPSFQPYAATMEFSTTFFDASEVTEDTILHEMAHALGFGLVWDELGCYSTTCTVGSNANVSYICDQGVAQYNQTNCPDVGLPDLLIETSSGSAGSDCGHWTEADYDNELMTPISEIPEVDQPLSRFTIGAMSDIWGPVNVLEANNFTCPGVGAASVMSGPQ------HTSILLRPVNIKDALIQGAAMGETVYEHQLVNLTPAERQEVVDALAAMGKTV 328

The following BLAST results are available for this feature:

BLAST of NO27G01580.1 vs.

BLAST of NO27G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854957.1	9.600e-74	48.20	zinc metalloendopeptidase, partial [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G01580	NO27G01580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01580.1	NO27G01580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01580.1.cds1	NO27G01580.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01580.1.cds2	NO27G01580.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01580.1.cds3	NO27G01580.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01580.1.cds4	NO27G01580.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01580.1.cds5	NO27G01580.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:525310..528041+
coding sequence from alignment at chr27:525310..528041+

mRNA sequence

>NO27G01580.1 ID=NO27G01580.1|Name=NO27G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp
AACAAGCTTTCTCCTTGAGAAATCATGCGTCGCGCTCTTTCTCTGCTTGT
CCTCGGCATCACCCTTGCCCTCACTGCGGCTCAACCGACGTTGACCCTCA
CCTCCATCAAGGCTGTCGATGTGGCTAGGGCAAACAACGACCGATGGAGT
CTCAAGGGCTACCTTAGTGACCCTGACAAGAATTATGTCCCGGCCATTGG
TGAAGTTGGCATGACTGCTGCCCTTCAAAACTCGAACGATGTCTCCCTGA
ATGACGTGGTTTTCAACCCCGCTGATTGTACATTGCTCAAAAACGATAAG
GGAATCATTTGTAAAGCAAGAGGTATCCATTTGTCGCTCAAGAGGACCAA
GAGGGTACCCAAAGATGCTACGATTAAGGCGCAGAAGAACCACAACACGA
CCAGCAGCGCATCTTCCTATTACAGGGTTTCGGGTGTCTTCCGCCGTCAG
GTGTTCAACACCATTATCTCGACGCCTCTGACCGCTATCTTCGCAATAGA
TGGTTTTCCCAATCTTTCTACTACTAGTTCAAAATGCACTGAGAAGGATG
GGATCAGGGCTAGCAAGTACCTCTGCAAGACGGCGCAGTCGCATGGCCCC
GCGCCCGCACCAGCACCAACCCAATCTCCCTCACTTTCACCCAGCTCGCT
GCCTACCTCTGTTCCCTCCCTGTCGCCATCTACGCTGCCCTCCTCTATTC
CATCGCTGTCCCCCTCTACACTGCCCTCCTCTGCACCCGCCTCAACATTT
AATATTACGTTGATTAATGTAAACCCAGCTCAAACCGGATTAGACGCTTT
TATGTCATCTGCGCAGGCCCGCTGGCAGAGAATCATCACTGCTGAAGCAG
AAGACATCAACTTAGGTGCCAGCGTGGACCTCACGGCTGGGAGGTTTCCA
TCATTTTCTTATTCCGGGCCTGTTGACGATATTATCATCTTTTACGCGCT
CACAACGTTGCCTCCATTGGTGCTGGGGTCGGCCGGACCGACATACCTTC
GAGGAGATAATGCTCAACCTATAGCAGGGACGATGCGATTTAGCATTGAT
TATTTCAATGATGGTGATATAACGGAAGATGTAATTTTACATGAAATGGC
ACATGTCCTAGGCTTCGGCACTACCTGGAGATCTAAAGGCTGCCTTTCGA
AAGAATGCGACGAGAACACCCCCGCGCCCGTCACCTACACCTGTGCAAAT
GGTCTCGCTCAATATGCCATGATTGAGACCTGTACGACTCTTTTTCCCGA
CCTAACCATCGAGACAAGCACCGGTCGTCCCGGCTCCGATTGTGGACATT
GGGCAGAGGCCTTTTATAAGACGGAACTCATGACACCAACGACTGCAGCC
AGTCTTGAATCGAGCCTGCTCTCTCGCTTTACCATCGGAGCAATGGCAGA
TATTTGGGGCTCGGTAAACTACGCCGAGGCTGATACGTTCGCATGCACGG
CAGGCATTTCATCGAGCCCACAAGCTCAGTCGGATAACGCGCCAATTTCG
GAGATGTTATATCCTGTAAATGGCGGTGAAGTCATTCTCACAATGGCACA
GGCGGGTCAGACCATATACGACTACCAGCTTACAGGGCTGTCAGAAGAGG
AGAGACAAGCCGTATTGGATGCCTTGGCGAACTTAGGCAAGACCATCATC
ATGACCTGACCGACGCCGAAAGTAAGTTTGTCTAGATATGGAGAGATGGA
CATGGCACTATATTCATCATATCAATATACCATTGCAAACTTTAAGTGGT
TCAAAATTATTGAAAAATGACGGCATTAATTGTGGATAAAGAGTGGAGCA
GGAAATATTTCACACCCACGATCCGACCAATGACAATGTTCCATGGCCAT
GAAGACTACGATAATGTTCTCGTCTGCTTTCTAGTGTTCTGAATGTGTGT
CTTTCCTTGGTTGAGCACTTCTTGTTTTGTGTGCTTATATTCCCTGGACC
CTCCCGAAGAGACCAGTCATGGAGTTTAATCTTCTGACCCCGATTTCCTA
CATTATCCATCTTTCTGAAGAAGAGAAGGTATTACTTGTGAAAGAAGCCG
TACTAATATTGTAAGATCACTCCATTTCTTTCGATTGACATGTTGGCATG
TGTGAGTGTGTCGTACAGGTAATTTGGCCGATTGGACACCCAATGGAGTG
GTGTGGTGGGTTGCCCGATAGACAGGCTTCAAACAGCTGCATCAGCAGTA
AGAAGAAAAAGAAGGAAAAGAGAAGAAGGAGGGAGAGG

protein sequence of NO27G01580.1

>NO27G01580.1-protein ID=NO27G01580.1-protein|Name=NO27G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MRRALSLLVLGITLALTAAQPTLTLTSIKAVDVARANNDRWSLKGYLSDP
DKNYVPAIGEVGMTAALQNSNDVSLNDVVFNPADCTLLKNDKGIICKARG
IHLSLKRTKRVPKDATIKAQKNHNTTSSASSYYRVSGVFRRQVFNTIIST
PLTAIFAIDGFPNLSTTSSKCTEKDGIRASKYLCKTAQSHGPAPAPAPTQ
SPSLSPSSLPTSVPSLSPSTLPSSIPSLSPSTLPSSAPASTFNITLINVN
PAQTGLDAFMSSAQARWQRIITAEAEDINLGASVDLTAGRFPSFSYSGPV
DDIIIFYALTTLPPLVLGSAGPTYLRGDNAQPIAGTMRFSIDYFNDGDIT
EDVILHEMAHVLGFGTTWRSKGCLSKECDENTPAPVTYTCANGLAQYAMI
ETCTTLFPDLTIETSTGRPGSDCGHWAEAFYKTELMTPTTAASLESSLLS
RFTIGAMADIWGSVNYAEADTFACTAGISSSPQAQSDNAPISEMLYPVNG
GEVILTMAQAGQTIYDYQLTGLSEEERQAVLDALANLGKTIIMT*

mRNA from alignment at chr27:525310..528041+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G01580.1 ID=NO27G01580.1|Name=NO27G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2732bp|location=Sequence derived from alignment at chr27:525310..528041+ (Nannochloropsis oceanica)
AACAAGCTTTCTCCTTGAGAAATCATGCGTCGCGCTCTTTCTCTGCTTGT
CCTCGGCATCACCCTTGCCCTCACTGCGGCTCAACCGACGTTGACCCTCA
CCTCCATCAAGGCTGTCGATGTGGCTAGGGCAAACAACGACCGATGGAGT
CTCAAGGGCTACCTTAGTGACCCTGACAAGAATTATGTCCCGGCCATTGG
TGAAGTTGGCATGACTGCTGCCCTTCAAAACTCGAACGATGTCTCCCTGA
ATGACGTGGTTTTCAACCCCGCTGATTGTACATTGCTCAAAAACGATAAG
GGAATCATTTGTAAAGCAAGAGGTATCCATTTGTCGCTCAAGAGGACCAA
GAGGGTACCCAAAGATGCTACGATTAAGGCGCAGAAGAACCACAACACGA
CCAGCAGCGCATCTTCCTATTACAGGGTTTCGGGTGTCTTCCGCCGTCAG
GTGTTCAACACCATTATCTCGACGCCTCTGACCGCTATCTTCGCAATAGA
TGGTTTTCCCAATCTTTCTACTACTAGTTCAAAATGCACTGAGAAGGATG
GGATCAGGGCTAGCAAGTACCTCTGCAAGACGGCGCAGTCGCATGGCCCC
GCGCCCGCACCAGCACCAACCCAATCTCCCTCACTTTCACCCAGCTCGCT
GCCTACCTCTGTTCCCTCCCTGTCGCCATCTACGCTGCCCTCCTCTATTC
CATCGCTGTCCCCCTCTACACTGCCCTCCTCTGCACCCGCCTCAGTGAGT
TTAACAAGATAATTCAAGCTAATGGCTCTTAACTGAAAAATGTCTATGAC
CACCTCACATATAACACAGACATTTAATATTACGTTGATTAATGTAAACC
CAGCTCAAACCGGATTAGACGCTTTTATGTCAGTAAGTCAGACCTTTTAT
TAAATATTATGTCAATGACGGACACCTGGATGATACCAACCGACCTACAT
ACTTATCCTATTCCTTTCTATGCATTGACCCATTCAGTCTGCGCAGGCCC
GCTGGCAGAGAATCATCACTGCTGAAGCAGAAGACATCAACTTAGGTGCC
AGCGTGGACCTCACGGCTGGGAGGTTTCCATCATTTTCTTATTCCGGGCC
TGTTGACGATATTATCATCTTTTACGCGCTCACAACGTTGCCTCCATTGG
TGCTGGGGTCGGCCGGACCGACATACCTTCGAGGAGATAATGCTCAACCT
ATAGCAGGGACGATGCGATTTAGCATTGATTATTTCAATGATGGTGATAT
AACGGAAGATGTAATTTTACATGAAATGGCACATGTCCTAGGCTTCGGCA
CTGTAAGTGCGGGGGAAAAGGGCAAAGCAGAGACTGGAGCCGCGATAACG
CTCTTGAACACTGGTGCTTATGTGTGTTATGGTGTAATTTACCTAGGTCG
GGAGGTGGCCTCCGTTCGAATTACTGCAGGTCATTTGACGCACGATATGA
GAAAATAAGGAAAGCCCACTATCCGTTCCCTCCCATTTATTTTAGTGCCC
TAAATTGTCATTATCATCTTTTAATACCATTCACCCAACATGACAGACCT
GGAGATCTAAAGGCTGCCTTTCGAAAGAATGCGACGAGAACACCCCCGCG
CCCGTCACCTACACCTGTGCAAATGGTCTCGCTCAATATGCCATGATTGA
GACCTGTACGACTCTTTTTCCCGACCTAACCATCGAGACAAGCACCGGTC
GTCCCGGCTCCGATTGTGGACATTGGGCAGAGGCCTTTTATAAGACGGAA
CTCATGACACCAACGGTACGACTTGTGCTCCTCATTGCCTCTTGTTTTCG
ACCTAATTGATTACCCCTCACGACTCACGCAACAGACTGCAGCCAGTCTT
GAATCGAGCCTGCTCTCTCGCTTTACCATCGGAGCAATGGCAGATATTTG
GGGCTCGGTAAACTACGCCGAGGCTGATACGTTCGCATGCACGGCAGGCA
TTTCATCGAGCCCACAAGCTCAGTCGGATAACGCGCCAATTTCGGAGATG
TTATATCCTGTAAATGGCGGTGAAGTCATTCTCACAATGGCACAGGCGGG
TCAGACCATATACGACTACCAGCTTACAGGGCTGTCAGAAGAGGAGAGAC
AAGCCGTATTGGATGCCTTGGCGAACTTAGGCAAGACCATCATCATGACC
TGACCGACGCCGAAAGTAAGTTTGTCTAGATATGGAGAGATGGACATGGC
ACTATATTCATCATATCAATATACCATTGCAAACTTTAAGTGGTTCAAAA
TTATTGAAAAATGACGGCATTAATTGTGGATAAAGAGTGGAGCAGGAAAT
ATTTCACACCCACGATCCGACCAATGACAATGTTCCATGGCCATGAAGAC
TACGATAATGTTCTCGTCTGCTTTCTAGTGTTCTGAATGTGTGTCTTTCC
TTGGTTGAGCACTTCTTGTTTTGTGTGCTTATATTCCCTGGACCCTCCCG
AAGAGACCAGTCATGGAGTTTAATCTTCTGACCCCGATTTCCTACATTAT
CCATCTTTCTGAAGAAGAGAAGGTATTACTTGTGAAAGAAGCCGTACTAA
TATTGTAAGATCACTCCATTTCTTTCGATTGACATGTTGGCATGTGTGAG
TGTGTCGTACAGGTAATTTGGCCGATTGGACACCCAATGGAGTGGTGTGG
TGGGTTGCCCGATAGACAGGCTTCAAACAGCTGCATCAGCAGTAAGAAGA
AAAAGAAGGAAAAGAGAAGAAGGAGGGAGAGG

Coding sequence (CDS) from alignment at chr27:525310..528041+

>NO27G01580.1 ID=NO27G01580.1|Name=NO27G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at chr27:525310..528041+ (Nannochloropsis oceanica)
ATGCGTCGCGCTCTTTCTCTGCTTGTCCTCGGCATCACCCTTGCCCTCAC
TGCGGCTCAACCGACGTTGACCCTCACCTCCATCAAGGCTGTCGATGTGG
CTAGGGCAAACAACGACCGATGGAGTCTCAAGGGCTACCTTAGTGACCCT
GACAAGAATTATGTCCCGGCCATTGGTGAAGTTGGCATGACTGCTGCCCT
TCAAAACTCGAACGATGTCTCCCTGAATGACGTGGTTTTCAACCCCGCTG
ATTGTACATTGCTCAAAAACGATAAGGGAATCATTTGTAAAGCAAGAGGT
ATCCATTTGTCGCTCAAGAGGACCAAGAGGGTACCCAAAGATGCTACGAT
TAAGGCGCAGAAGAACCACAACACGACCAGCAGCGCATCTTCCTATTACA
GGGTTTCGGGTGTCTTCCGCCGTCAGGTGTTCAACACCATTATCTCGACG
CCTCTGACCGCTATCTTCGCAATAGATGGTTTTCCCAATCTTTCTACTAC
TAGTTCAAAATGCACTGAGAAGGATGGGATCAGGGCTAGCAAGTACCTCT
GCAAGACGGCGCAGTCGCATGGCCCCGCGCCCGCACCAGCACCAACCCAA
TCTCCCTCACTTTCACCCAGCTCGCTGCCTACCTCTGTTCCCTCCCTGTC
GCCATCTACGCTGCCCTCCTCTATTCCATCGCTGTCCCCCTCTACACTGC
CCTCCTCTGCACCCGCCTCAACATTTAATATTACGTTGATTAATGTAAAC
CCAGCTCAAACCGGATTAGACGCTTTTATGTCATCTGCGCAGGCCCGCTG
GCAGAGAATCATCACTGCTGAAGCAGAAGACATCAACTTAGGTGCCAGCG
TGGACCTCACGGCTGGGAGGTTTCCATCATTTTCTTATTCCGGGCCTGTT
GACGATATTATCATCTTTTACGCGCTCACAACGTTGCCTCCATTGGTGCT
GGGGTCGGCCGGACCGACATACCTTCGAGGAGATAATGCTCAACCTATAG
CAGGGACGATGCGATTTAGCATTGATTATTTCAATGATGGTGATATAACG
GAAGATGTAATTTTACATGAAATGGCACATGTCCTAGGCTTCGGCACTAC
CTGGAGATCTAAAGGCTGCCTTTCGAAAGAATGCGACGAGAACACCCCCG
CGCCCGTCACCTACACCTGTGCAAATGGTCTCGCTCAATATGCCATGATT
GAGACCTGTACGACTCTTTTTCCCGACCTAACCATCGAGACAAGCACCGG
TCGTCCCGGCTCCGATTGTGGACATTGGGCAGAGGCCTTTTATAAGACGG
AACTCATGACACCAACGACTGCAGCCAGTCTTGAATCGAGCCTGCTCTCT
CGCTTTACCATCGGAGCAATGGCAGATATTTGGGGCTCGGTAAACTACGC
CGAGGCTGATACGTTCGCATGCACGGCAGGCATTTCATCGAGCCCACAAG
CTCAGTCGGATAACGCGCCAATTTCGGAGATGTTATATCCTGTAAATGGC
GGTGAAGTCATTCTCACAATGGCACAGGCGGGTCAGACCATATACGACTA
CCAGCTTACAGGGCTGTCAGAAGAGGAGAGACAAGCCGTATTGGATGCCT
TGGCGAACTTAGGCAAGACCATCATCATGACCTGA

Synonyms

Publications