NO27G01550.1, NO27G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01550.1
Unique NameNO27G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length912
Alignment locationchr27:513421..515021 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:513421..515021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01550NO27G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01550.1NO27G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01550.1.cds1NO27G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01550.1.cds2NO27G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01550.1.cds3NO27G01550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01550.1.cds4NO27G01550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01550.1 ID=NO27G01550.1|Name=NO27G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
ATGTTCACCAGCGGCCTCCTCCCTTCCAAGGGGGTAACAGGAGGAAACGG
TGGAGGAGGAACAGGAGCAGGGCCACTTCTAGCATCACACGGACAAGGAA
AAGCACCGATATCATCATCACCATCCTCGTCATTTTTTAAGGGCGTTGGG
TCCAACAGTATGTCGTCGGCGTTCAGTACCAGCAATCATGATAGAGAAGG
AGGAGGAGGGGGAGCAAGCATGGAAGGGCAGGGAGAGGGAAACCCGCATA
TTGGCGTCTTAATAATGAAGAGTAGGAAAGTAGGAGCTGAGGAGGAACCT
ATCCCCCCCTCCCTTCTCGTACGCTTCTCCACCCTCCTCTCTCTCTTCAC
TGTTCTCACGGGCCTTGCCTCCCTGGGCCTGCATTTGTTACTCCTCTTGT
CGCCAGCCACGAGGGCCATGATGACGTGGTCCGAAATCATTATCCGCTTC
TACGCCTGCTCCCTCACTCCCGTCCTCCTCCTCGCCGAAACCAGCAGCTG
CTCCCTCCTTCCCTCCCTTTCTCCCTCCCTCGGGAGACACGTTACGGATC
GCCTCTTCTCCTTCTTCCCCTCCCTCCATCACGCCCTCCCCCGCTCCCTC
CTCCTCCTCTTCCTCGGGGCGCAGCTCAACCTCCCGTCACTCGCTGCCTC
GGCGCTGTGGCCTGCGGAAGGCGAGGGAGGGAAGGAGCAAGGTGCCTCCC
CTGTTCATGCGGTGGCCGTAGCGATGATGGGAGTTGCGGTAGGGCAGGTG
CTGGTGAGCGTGGTGTGCTGCAGGGGAAGGAATGGAGGGAGGGAGAGGGG
GAGGATGAGGAGGAGGAAGCCCCTCCCCCTGGACGTCCATTCCCTCCAAG
CTCAGAAATTTGAAATCGAGCGCCTGCTGGCAGAAACCGAAGACAGGCTT
ATGCACTTGTGA
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protein sequence of NO27G01550.1

>NO27G01550.1-protein ID=NO27G01550.1-protein|Name=NO27G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MFTSGLLPSKGVTGGNGGGGTGAGPLLASHGQGKAPISSSPSSSFFKGVG
SNSMSSAFSTSNHDREGGGGGASMEGQGEGNPHIGVLIMKSRKVGAEEEP
IPPSLLVRFSTLLSLFTVLTGLASLGLHLLLLLSPATRAMMTWSEIIIRF
YACSLTPVLLLAETSSCSLLPSLSPSLGRHVTDRLFSFFPSLHHALPRSL
LLLFLGAQLNLPSLAASALWPAEGEGGKEQGASPVHAVAVAMMGVAVGQV
LVSVVCCRGRNGGRERGRMRRRKPLPLDVHSLQAQKFEIERLLAETEDRL
MHL*
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mRNA from alignment at chr27:513421..515021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01550.1 ID=NO27G01550.1|Name=NO27G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at chr27:513421..515021+ (Nannochloropsis oceanica)
ATGTTCACCAGCGGCCTCCTCCCTTCCAAGGGGGTAACAGGAGGAAACGG
TGGAGGAGGAACAGGAGCAGGGCCACTTCTAGCATCACACGGACAAGGAA
AAGCACCGATATCATCATCACCATCCTCGTCATTTTTTAAGGGCGTTGGG
TCCAACAGTATGTCGTCGGCGTTCAGTACCAGCAATCATGATAGAGAAGG
AGGAGGAGGGGGAGCAAGCATGGAAGGGCAGGGAGAGGGAAACCCGCATA
TTGGCGTCTTAATAATGAAGAGTAGGAAAGTAGGAGCTGAGGAGGTAAGG
CTCACAAGAAGGAAAGGAAGAAACGCAGGAGGGAGGGAGTGCGGCGTGTC
TGCTTGCCAAATGAGGGATGTACGGACCCCTCCCTAATATATGGCCCTCC
CTCCCTCCCTCTCCTTTATGCCCTCTCCCCCTGTCCCTCTCTCTTCCTCC
TGCCCTCCCTCCCTCTTTCTTTCCCTTACTGACTCTTTACTCTGCCTCTT
CCTCCTCCTGCCCCTCCTCCTCTCCCTTCTTGCTCTTTCGCAGACCTTAC
TGCCTTGACCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCTTTACCCAGGA
ACCTATCCCCCCCTCCCTTCTCGTACGCTTCTCCACCCTCCTCTCTCTCT
TCACTGTTCTCACGGGCCTTGCCTCCCTGGGCCTGCATTTGTTACTCCTC
TTGTCGCCAGCCACGAGGGCCATGATGACGGTAAGAGGGAGGGAGGGAGG
GAGGGTCAGGGAGGGAGGGAGGGAGGGAAGGAGGGGGGGAGGGAGGGAGG
GAGGGCCCCCTTCCTTTCACCCCATCCCTCATTTACCACGTTGACCTCGA
TCATCATTTCTTAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTAGTGG
TCCGAAATCATTATCCGCTTCTACGCCTGCTCCCTCACTCCCGTCCTCCT
CCTCGCCGAAACCAGCAGCTGCTCCCTCCTTCCCTCCCTTTCTCCCTCCC
TCGGGAGACACGTTACGGATCGCCTCTTCTCCTTCTTCCCCTCCCTCCAT
CACGCCCTCCCCCGCTCCCTCCTCCTCCTCTTCCTCGGGGCGCAGCTCAA
CCTCCCGTCACTCGCTGCCTCGGCGCTGTGGCCTGCGGAAGGCGAGGGAG
GGAAGGAGCAAGGTGCCTCCCCTGTTCATGCGGTGGCCGTAGCGATGATG
GGAGTTGCGGTAGGGCAGGTGCTGGTGAGCGTGGTGTGCTGCAGGGGAAG
GAATGGAGGGAGGGAGAGGGGGAGGATGAGGAGGAGGAAGGTACGTCATC
GCGACACGAGGAGAGAAAGGAGGGAGGGAGTGAGGACGGGAGGGAAGGAG
GGAGATGAAGGGAGGGGCCTGATACAGCAACCGAGATAAACGATGTTTAT
GGCGAGCCCACGCTCCACCCGACATGTTCTCACCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCACTCCCCACTCTCTTTCCTCCTCTCCTCCC
TCCCCCAGCCCCTCCCCCTGGACGTCCATTCCCTCCAAGCTCAGAAATTT
GAAATCGAGCGCCTGCTGGCAGAAACCGAAGACAGGCTTATGCACTTGTG
A
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Coding sequence (CDS) from alignment at chr27:513421..515021+

>NO27G01550.1 ID=NO27G01550.1|Name=NO27G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr27:513421..515021+ (Nannochloropsis oceanica)
ATGTTCACCAGCGGCCTCCTCCCTTCCAAGGGGGTAACAGGAGGAAACGG
TGGAGGAGGAACAGGAGCAGGGCCACTTCTAGCATCACACGGACAAGGAA
AAGCACCGATATCATCATCACCATCCTCGTCATTTTTTAAGGGCGTTGGG
TCCAACAGTATGTCGTCGGCGTTCAGTACCAGCAATCATGATAGAGAAGG
AGGAGGAGGGGGAGCAAGCATGGAAGGGCAGGGAGAGGGAAACCCGCATA
TTGGCGTCTTAATAATGAAGAGTAGGAAAGTAGGAGCTGAGGAGGAACCT
ATCCCCCCCTCCCTTCTCGTACGCTTCTCCACCCTCCTCTCTCTCTTCAC
TGTTCTCACGGGCCTTGCCTCCCTGGGCCTGCATTTGTTACTCCTCTTGT
CGCCAGCCACGAGGGCCATGATGACGTGGTCCGAAATCATTATCCGCTTC
TACGCCTGCTCCCTCACTCCCGTCCTCCTCCTCGCCGAAACCAGCAGCTG
CTCCCTCCTTCCCTCCCTTTCTCCCTCCCTCGGGAGACACGTTACGGATC
GCCTCTTCTCCTTCTTCCCCTCCCTCCATCACGCCCTCCCCCGCTCCCTC
CTCCTCCTCTTCCTCGGGGCGCAGCTCAACCTCCCGTCACTCGCTGCCTC
GGCGCTGTGGCCTGCGGAAGGCGAGGGAGGGAAGGAGCAAGGTGCCTCCC
CTGTTCATGCGGTGGCCGTAGCGATGATGGGAGTTGCGGTAGGGCAGGTG
CTGGTGAGCGTGGTGTGCTGCAGGGGAAGGAATGGAGGGAGGGAGAGGGG
GAGGATGAGGAGGAGGAAGCCCCTCCCCCTGGACGTCCATTCCCTCCAAG
CTCAGAAATTTGAAATCGAGCGCCTGCTGGCAGAAACCGAAGACAGGCTT
ATGCACTTGTGA
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Synonyms
Publications