NO27G01310.1, NO27G01310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01310.1
Unique Name	NO27G01310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2176
Alignment location	chr27:421150..424231 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:421150..424231 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G01310.1 vs.
Match: WP_029637908.1 (coproporphyrinogen III oxidase family protein [[Scytonema hofmanni] UTEX B 1581])

HSP 1 Score: 282.0 bits (720), Expect = 4.600e-72
Identity = 167/391 (42.71%), Postives = 219/391 (56.01%), Query Frame = 0

Query:  200 LTSIFFGGGTPSLTPPHLLRLLLKEIEDLFGVSDGAEVSMEMDPGTFDEERLEAFLACGINRVSVGVQSFNQTLLSAAGRAHNRDEVRAALDLLRKPRKRARLNFSLDLISGLPFQSLEQWEESLREAIAVCPPHISLYDLQVEPGTAFGRWYGKGEGEGNSTHEASSSFSSTSTSSSSSSSLPPSLSSPSPLPPEESTASMYVRASALLQEAGYDHYEVSNYAKPGFQCRHNRVYWEGVPFLALGMGAASYLDWHRFSRPRSLFNYTMWVHELEQEGWRKASGLEEAQKEMSKLQWQLDRLEDLLMVGLRLKEGVELYTLAQQTGMEGGWERGRAAQVVLACEQAVERFISMGAVVLEKGGGGGGSRRTRVVLTDPMGFLLSNEIIAEIF 591
            L +IFFGGGTPSL     LR +L+ +E  FG+S GAE+SMEMDPGTFD E L+ +   G+NRVS+GVQ+F   LL  AGR+HN  ++ AA+DL+R+ R      FS+DLISGLP Q+L++W+ SL +A+A+ P HIS+YDL +EPGTAFGR+Y  G+                                P P      T  MY  A  +L  AGY+HYE+SNYA+PG QCRHNRVYWE  P+   GMGAASYL+  RF+RPR    Y  WV         +  GL +      +     + L D LM+GLRL EGV L  L  Q G E           V    + ++ +     V + +G         R+ L+DP GFL SN ++AE+F
Sbjct:   68 LKTIFFGGGTPSLLSIEQLRRILEALEQRFGISPGAEISMEMDPGTFDLEHLQGYCRVGVNRVSLGVQAFESELLQVAGRSHNITDIFAAVDLIRQVRVP---EFSIDLISGLPHQTLDRWQYSLEKAVAIAPTHISIYDLTIEPGTAFGRFYKPGD-------------------------------QPLPTDET--TVQMYRLAQQILTMAGYEHYEISNYAQPGHQCRHNRVYWENRPYYGFGMGAASYLEGKRFTRPRKTKEYYSWV---------ETGGLIDCDVTPRE-----EILLDTLMLGLRLAEGVSLDALTAQFGEE----------KVKEIYKCLQPYFEKHWVEVVEG---------RLKLSDPDGFLFSNVVLAELF 389

The following BLAST results are available for this feature:

BLAST of NO27G01310.1 vs.

BLAST of NO27G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
WP_029637908.1	4.600e-72	42.71	coproporphyrinogen III oxidase family protein [[Sc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G01310	NO27G01310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01310.1	NO27G01310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01310.1.cds1	NO27G01310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds2	NO27G01310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds3	NO27G01310.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds4	NO27G01310.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds5	NO27G01310.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds6	NO27G01310.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds7	NO27G01310.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01310.1.cds8	NO27G01310.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:421150..424231+
coding sequence from alignment at chr27:421150..424231+

mRNA sequence

>NO27G01310.1 ID=NO27G01310.1|Name=NO27G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
GGGGGAGGTCGCCTTCAGATAGCGTGAGGTTTTCGTGGGGCCGACACCAA
GGCGTTTCCAGAGTCGCCCCTGATTGTTAAGTCTTGTCATCTACCTGACT
ACAGGCACTTTTATTCCTGTTTACGCCCAAGGCACCCATGAGAATGGGGA
ACAAGAGAGGGAAATGCGGGTAGCCACCCGGCATGGCCCACGGGCGCGCC
TCGGCTTGGGCCGCCGTTGTGTTGCTTCTTTGCCTTCTCCCCATCGGTGT
CCTCGTTTCACATATCTTCTCCTACGACACACGAAATAAGACATCGTAAT
TACCAATAGCAGGATGACAAGTAGGACAAAACCCAGAAGAAGATCATTCC
TGCTCCTTTTCCTTCCTGTCTTTCTCCTGCTCCTCCGTCCCCTCCTTCCC
CTCGCCTTCCTTCCTTCCCCACCCCCCGTCCAGCACCACCGCGTCGTATC
CCTCAACCTCTACGCTACGCCTTCGGCTCCAACTCCTTCCACGCCCTTGC
TCCCTCGAGCCTTGTACGTGCACCTGCCCTTTTGTCGTCGTCGTTGCTTT
TATTGCGACTTTCCTATCAAAGTCGTAGGGGACGGCGCGACGGCTGCTGA
TAAATACAGCCGTGAGTACGTCCAGCTGGTGCTACGAGAAATGAAGGCCG
CTTTTGGAAGGACGGTGAGGGAGGGAGGGAGAGAGGAGAGGGGGGGACAT
TGGGTAGAAGGCGTGCCATGGTCGTTGTCGGAGCTTGGCGGGTTGACCTC
TTCTGCCTCCTCTTCCACCTCCTCTTCCACGTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCATCATCATCATCATCATCATCATCATCTCCCTCCTCC
TCCTCCTCCTCCTCCTCCCCAAGCACCACCACTGCGGGCGTCATCAAAGC
CAGTGGGGGCCTGACCAGTATCTTCTTCGGTGGCGGCACTCCCTCCCTCA
CCCCGCCCCACCTCCTTCGCCTTCTCCTGAAAGAGATCGAGGACTTGTTC
GGGGTGAGCGATGGGGCGGAAGTGTCCATGGAGATGGACCCGGGCACTTT
CGACGAGGAGAGGCTGGAGGCCTTCCTGGCCTGTGGGATCAACCGGGTGA
GCGTGGGTGTACAATCCTTCAACCAAACTCTCCTCTCCGCCGCTGGGCGC
GCGCACAACCGTGACGAGGTCCGCGCTGCCCTCGATCTCCTGAGAAAGCC
GAGGAAGAGGGCCCGCCTCAACTTCAGCCTCGATCTGATCAGCGGTCTCC
CTTTTCAGTCCCTGGAGCAGTGGGAAGAATCTCTCCGCGAGGCCATCGCT
GTCTGTCCTCCTCACATCTCTCTCTACGACCTCCAAGTCGAGCCAGGAAC
GGCCTTTGGTCGCTGGTACGGGAAGGGAGAAGGCGAGGGCAACAGTACGC
ACGAAGCTTCCTCCTCTTTTTCTTCCACTTCCACTTCTTCCTCCTCCTCT
TCCTCCCTCCCTCCTTCTCTTTCCTCTCCCTCTCCTCTGCCTCCCGAGGA
GTCTACCGCGTCCATGTATGTCCGAGCCTCGGCCTTGCTTCAAGAGGCGG
GCTATGACCATTATGAGGTCTCCAACTACGCCAAGCCCGGCTTTCAATGT
CGTCACAATAGGGTATATTGGGAAGGCGTGCCTTTCCTGGCCCTGGGCAT
GGGAGCGGCGAGCTACCTAGACTGGCACCGCTTCAGCCGCCCTCGGTCTC
TATTCAATTACACCATGTGGGTGCACGAGCTAGAGCAAGAAGGGTGGAGG
AAAGCCAGCGGCCTGGAGGAGGCGCAGAAGGAGATGTCGAAATTGCAATG
GCAGTTGGACAGACTGGAGGACCTGCTTATGGTGGGCCTCCGTCTCAAGG
AAGGAGTGGAGCTTTATACCCTCGCACAGCAGACAGGGATGGAGGGAGGT
TGGGAGAGGGGGAGAGCCGCACAAGTCGTTTTGGCATGCGAACAGGCCGT
GGAACGATTTATCTCCATGGGCGCTGTTGTACTGGAGAAAGGAGGGGGAG
GGGGAGGAAGCAGAAGGACAAGGGTAGTGTTGACGGATCCGATGGGATTT
TTGCTTTCAAACGAGATTATTGCCGAGATCTTCGCAGCGGTTGAGATATT
GTTTGAGGGATGGGAGGAGGGGGATAAAGGAGGAACGGAAGGAGGGAGGA
AAGAAAGTACAACAACCACCAGGTAA

protein sequence of NO27G01310.1

>NO27G01310.1-protein ID=NO27G01310.1-protein|Name=NO27G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MTSRTKPRRRSFLLLFLPVFLLLLRPLLPLAFLPSPPPVQHHRVVSLNLY
ATPSAPTPSTPLLPRALYVHLPFCRRRCFYCDFPIKVVGDGATAADKYSR
EYVQLVLREMKAAFGRTVREGGREERGGHWVEGVPWSLSELGGLTSSASS
STSSSTSSSSSSSSSSSSSSSSSSSSPSSSSSSSSPSTTTAGVIKASGGL
TSIFFGGGTPSLTPPHLLRLLLKEIEDLFGVSDGAEVSMEMDPGTFDEER
LEAFLACGINRVSVGVQSFNQTLLSAAGRAHNRDEVRAALDLLRKPRKRA
RLNFSLDLISGLPFQSLEQWEESLREAIAVCPPHISLYDLQVEPGTAFGR
WYGKGEGEGNSTHEASSSFSSTSTSSSSSSSLPPSLSSPSPLPPEESTAS
MYVRASALLQEAGYDHYEVSNYAKPGFQCRHNRVYWEGVPFLALGMGAAS
YLDWHRFSRPRSLFNYTMWVHELEQEGWRKASGLEEAQKEMSKLQWQLDR
LEDLLMVGLRLKEGVELYTLAQQTGMEGGWERGRAAQVVLACEQAVERFI
SMGAVVLEKGGGGGGSRRTRVVLTDPMGFLLSNEIIAEIFAAVEILFEGW
EEGDKGGTEGGRKESTTTTR*

mRNA from alignment at chr27:421150..424231+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G01310.1 ID=NO27G01310.1|Name=NO27G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3082bp|location=Sequence derived from alignment at chr27:421150..424231+ (Nannochloropsis oceanica)
GGGGGAGGTCGCCTTCAGATAGCGTGAGGTTTTCGTGGGGCCGACACCAA
GGCGTTTCCAGAGTCGCCCCTGATTGTTAAGTCTTGTCATCTACCTGACT
ACAGGCACTTTTATTCCTGTTTACGCCCAAGGCACCCATGAGAATGGGGA
ACAAGAGAGGGAAATGCGGGTAGCCACCCGGCATGGCCCACGGGCGCGCC
TCGGCTTGGGCCGCCGTTGTGTTGCTTCTTTGCCTTCTCCCCATCGGTGT
CCTCGTTTCACATATCTTCTCCTACGACACACGAAATAAGACATCGTAAT
TACCAATAGCAGGATGACAAGTAGGACAAAACCCAGAAGAAGATCATTCC
TGCTCCTTTTCCTTCCTGTCTTTCTCCTGCTCCTCCGTCCCCTCCTTCCC
CTCGCCTTCCTTCCTTCCCCACCCCCCGTCCAGCACCACCGCGTCGTATC
CCTCAACCTCTACGCTACGCCTTCGGCTCCAACTCCTTCCACGCCCTTGC
TCCCTCGAGCCTTGTACGTGCACCTGCCCTTTTGTCGTCGTCGTTGCTTT
TATTGCGACTTTCCTATCAAAGTCGTAGGGGACGGCGCGACGGCTGCTGA
TAAATACAGCCGTGAGTACGTCCAGCTGGTGCTACGAGAAATGAAGGCCG
CTTTTGGAAGGACGGTGAGGGAGGGAGGGAGAGAGGAGAGGGGGGGACAT
TGGGTAGAAGGCGTGCCATGGTCGTTGTCGGAGCTTGGCGGGTTGACCTC
TTCTGCCTCCTCTTCCACCTCCTCTTCCACGTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCATCATCATCATCATCATCATCATCATCTCCCTCCTCC
TCCTCCTCCTCCTCCTCCCCAAGCACCACCACTGCGGGCGTCATCAAAGC
CAGTGGGGGCCTGACCAGTATCTTCTTCGGTGGCGGCACTCCCTCCCTCA
CCCCGCCCCACCTCCTTCGCCTTCTCCTGAAAGAGATCGAGGACTTGTTC
GGGGTGAGCGATGGGGCGGAAGTGTCCATGGAGATGGACCCGGGCACTTT
CGACGAGGAGAGGCTGGAGGCCTTCCTGGCCTGTGGTGGGTGAGGAGGGG
TAGCGGGAGGGAGGGGGAAGTACTACAACAAGCATTGTTGCAGGGAGGGA
AAGAAGAAAGGAGGAGGAATGAAGGGAGAGAGCGAGCGAGGAAGGAATGG
AAGAAAAATGCTCCTCTGACTGACTGCCTCTATGCGCTTGCTGATTTACG
ACGACGACAGGGATCAACCGGGTGAGCGTGGGTGTACAATCCTTCAACCA
AACTCTCCTCTCCGCCGCTGGGCGCGCGCACAAGTACGCTACGCTTCCTC
CCCCCTAGCCCTCTTCCCTCCCTACCTTATTTTCCTCTCCGCCTACCCTT
CCTTACCCTCACCCTTAACCTCACCGTCATCCTCACCCCCTCCCTCCACT
ATCCACCCCCCCCTCTCCCCAGCCGTGACGAGGTCCGCGCTGCCCTCGAT
CTCCTGAGAAAGCCGAGGAAGAGGGCCCGCCTCAACTTCAGCCTCGATCT
GATCAGCGGTCTCCCTTTTCAGGTAGGGGGGTGGGGAGGGAGAGGAGGAG
GGAGAAATGGAAGGAGGGTACATTTGAACACGACAAAAACGCGTTTTTCT
GACGAGGACACTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCAGTCCCTGG
AGCAGTGGGAAGAATCTCTCCGCGAGGCCATCGCTGTCTGTCCTCCTCAC
ATCTCTCTCTACGACCTCCAAGTCGAGCCAGGAACGGTGGGGAGGGAGGG
AGAGAGTGAGGGAGGGAGGTCAGGGGATCCTGCTGGCCGACTCAGGTGGT
GTTTAACAAGTCTCCTCCCTCCTCTCCCTCCTTCCTCCTTCCCCCCCCTC
CTTTCTCTTGCAGGCCTTTGGTCGCTGGTACGGGAAGGGAGAAGGCGAGG
GCAACAGTACGCACGAAGCTTCCTCCTCTTTTTCTTCCACTTCCACTTCT
TCCTCCTCCTCTTCCTCCCTCCCTCCTTCTCTTTCCTCTCCCTCTCCTCT
GCCTCCCGAGGAGTCTACCGCGTCCATGTATGTCCGAGCCTCGGCCTTGC
TTCAAGAGGCGGGCTATGACCATTATGAGGTGGGGAGAGAGGGGGGAGGG
TGGAGGCGATTGTACTTCTCTTTAACCATTTTCAGATCGAGCAATCAATG
AACCCCCCCCCCGTCCCTCCCTCTCTCCCTTCCCAAGGTCTCCAACTACG
CCAAGCCCGGCTTTCAATGTCGTCACAATAGGGTATATTGGGAAGGCGTG
CCTTTCCTGGCCCTGGGCATGGGAGCGGCGAGCTACCTAGGTAAAAAGGG
GGGAAGGGAGGGAGGGAGGGAATGGGGAAGGAAGAGACAGCACAGCTCAT
CGATCGAAGCCTTCTCAACGCTCTGCCTTTCTCCCTCCAAGACTGGCACC
GCTTCAGCCGCCCTCGGTCTCTATTCAATTACACCATGTGGGTGCACGAG
CTAGAGCAAGAAGGGTGGAGGAAAGCCAGCGGCCTGGAGGAGGCGCAGAA
GGAGATGTCGAAATTGCAATGGCAGTTGGACAGGTAGGCTTGCTCCCATC
CCTCCCTTCTTCCAAGCCATCTTATCCTCATCGCGGTCGGTGGTACACGG
ATAGGACTCGTGAGTGGTTGTCAACTTCTTTCTCCTTTCCCTCCCTCCCT
CCCTCCCTTCTTTTGCAGACTGGAGGACCTGCTTATGGTGGGCCTCCGTC
TCAAGGAAGGAGTGGAGCTTTATACCCTCGCACAGCAGACAGGGATGGAG
GGAGGTTGGGAGAGGGGGAGAGCCGCACAAGTCGTTTTGGCATGCGAACA
GGCCGTGGAACGATTTATCTCCATGGGCGCTGTTGTACTGGAGAAAGGAG
GGGGAGGGGGAGGAAGCAGAAGGACAAGGGTAGTGTTGACGGATCCGATG
GGATTTTTGCTTTCAAACGAGATTATTGCCGAGATCTTCGCAGCGGTTGA
GATATTGTTTGAGGGATGGGAGGAGGGGGATAAAGGAGGAACGGAAGGAG
GGAGGAAAGAAAGTACAACAACCACCAGGTAA

Coding sequence (CDS) from alignment at chr27:421150..424231+

>NO27G01310.1 ID=NO27G01310.1|Name=NO27G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr27:421150..424231+ (Nannochloropsis oceanica)
ATGACAAGTAGGACAAAACCCAGAAGAAGATCATTCCTGCTCCTTTTCCT
TCCTGTCTTTCTCCTGCTCCTCCGTCCCCTCCTTCCCCTCGCCTTCCTTC
CTTCCCCACCCCCCGTCCAGCACCACCGCGTCGTATCCCTCAACCTCTAC
GCTACGCCTTCGGCTCCAACTCCTTCCACGCCCTTGCTCCCTCGAGCCTT
GTACGTGCACCTGCCCTTTTGTCGTCGTCGTTGCTTTTATTGCGACTTTC
CTATCAAAGTCGTAGGGGACGGCGCGACGGCTGCTGATAAATACAGCCGT
GAGTACGTCCAGCTGGTGCTACGAGAAATGAAGGCCGCTTTTGGAAGGAC
GGTGAGGGAGGGAGGGAGAGAGGAGAGGGGGGGACATTGGGTAGAAGGCG
TGCCATGGTCGTTGTCGGAGCTTGGCGGGTTGACCTCTTCTGCCTCCTCT
TCCACCTCCTCTTCCACGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
ATCATCATCATCATCATCATCATCATCTCCCTCCTCCTCCTCCTCCTCCT
CCTCCCCAAGCACCACCACTGCGGGCGTCATCAAAGCCAGTGGGGGCCTG
ACCAGTATCTTCTTCGGTGGCGGCACTCCCTCCCTCACCCCGCCCCACCT
CCTTCGCCTTCTCCTGAAAGAGATCGAGGACTTGTTCGGGGTGAGCGATG
GGGCGGAAGTGTCCATGGAGATGGACCCGGGCACTTTCGACGAGGAGAGG
CTGGAGGCCTTCCTGGCCTGTGGGATCAACCGGGTGAGCGTGGGTGTACA
ATCCTTCAACCAAACTCTCCTCTCCGCCGCTGGGCGCGCGCACAACCGTG
ACGAGGTCCGCGCTGCCCTCGATCTCCTGAGAAAGCCGAGGAAGAGGGCC
CGCCTCAACTTCAGCCTCGATCTGATCAGCGGTCTCCCTTTTCAGTCCCT
GGAGCAGTGGGAAGAATCTCTCCGCGAGGCCATCGCTGTCTGTCCTCCTC
ACATCTCTCTCTACGACCTCCAAGTCGAGCCAGGAACGGCCTTTGGTCGC
TGGTACGGGAAGGGAGAAGGCGAGGGCAACAGTACGCACGAAGCTTCCTC
CTCTTTTTCTTCCACTTCCACTTCTTCCTCCTCCTCTTCCTCCCTCCCTC
CTTCTCTTTCCTCTCCCTCTCCTCTGCCTCCCGAGGAGTCTACCGCGTCC
ATGTATGTCCGAGCCTCGGCCTTGCTTCAAGAGGCGGGCTATGACCATTA
TGAGGTCTCCAACTACGCCAAGCCCGGCTTTCAATGTCGTCACAATAGGG
TATATTGGGAAGGCGTGCCTTTCCTGGCCCTGGGCATGGGAGCGGCGAGC
TACCTAGACTGGCACCGCTTCAGCCGCCCTCGGTCTCTATTCAATTACAC
CATGTGGGTGCACGAGCTAGAGCAAGAAGGGTGGAGGAAAGCCAGCGGCC
TGGAGGAGGCGCAGAAGGAGATGTCGAAATTGCAATGGCAGTTGGACAGA
CTGGAGGACCTGCTTATGGTGGGCCTCCGTCTCAAGGAAGGAGTGGAGCT
TTATACCCTCGCACAGCAGACAGGGATGGAGGGAGGTTGGGAGAGGGGGA
GAGCCGCACAAGTCGTTTTGGCATGCGAACAGGCCGTGGAACGATTTATC
TCCATGGGCGCTGTTGTACTGGAGAAAGGAGGGGGAGGGGGAGGAAGCAG
AAGGACAAGGGTAGTGTTGACGGATCCGATGGGATTTTTGCTTTCAAACG
AGATTATTGCCGAGATCTTCGCAGCGGTTGAGATATTGTTTGAGGGATGG
GAGGAGGGGGATAAAGGAGGAACGGAAGGAGGGAGGAAAGAAAGTACAAC
AACCACCAGGTAA

Synonyms

Publications