NO27G01290.1, NO27G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01290.1
Unique NameNO27G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1914
Alignment locationchr27:416418..419055 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:416418..419055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01290NO27G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01290.1NO27G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01290.1.cds1NO27G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01290.1.cds2NO27G01290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01290.1.cds3NO27G01290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01290.1.cds4NO27G01290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01290.1 ID=NO27G01290.1|Name=NO27G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
ATGGACCCCACCGCGCTTCAGCGCGCTTTCTTGAATCTCCCCAATCCTAC
CTCCATCTTAATAGCGGACACCATGGCTCCCCCCGTCGCCACCGTCGCCG
CCACCCCGCTGCTTCCACACGACAAAGACGCCTTCCCTCCCTCCCTCCCT
CCCTCTCCTGTCACTGCTGAAGAAGGTTCCCTCTTCATGCCGATCGCCGG
CAGCAGCAGCTGCAGCAGCACACCCAGCAGCAGCGGCACAGCGAGCCTCC
TCCTCCCAGCCACTATCAACTCCTTCCCCTCGCTCATGGAGCAAGCGAGC
ACCGTCGAGGGAAGGCCAGAAGGCGGAAGGGAGGGAAAAGTAGGCGGGCC
GCACTTGCAGGCCTATCCGCGCCTCGATCCCGCGCTTCCGCACAAAGACT
TGGGGGACTCTCCTTCCCGTCTAGCCGCCTCCAAAATTCCCAACCATCAA
GGGCCCAAGCTTGCCCTCCCTCCCTCCCTCCCTCCCCTGACTTTTTCGCC
GAGCACGGGAGGGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAA
TTGGGCTGCATGATGTATTGGAGGCAGTCATGCGTGGAGGAGGCAATCTT
CCTCCAGAGGCCCCACGAGTGGAGCCACTGCCAGTTGCCATTCACGTGCT
CGCGTGCCTCCTCTTCTCCCTCTCCCTCCTCGTCGCCCTTGTCTGGCTGC
GTTTCGAGAAGGACATTTTGGACAGCCTCGATCTTCCGGGGAGGATGGGA
GGGAGGGAGGCAAGCAGGCAGAAGAGGAGGAGAAGGAAGGGGTCGATGGG
TGGGGAGGGGGACGGGGGGGAAGAGAAAGAGGGGGAGTGTGAGTGGTGTG
TACTTTGTCAAAAGGAGAGGGAGGGCGAGAAAGAGGAGGGGATGAGGAGG
GGAAGGGGCGAGGGGGGAGGGATAAATGGGGTATGTGCGCTGGAGAAAGT
GAGGGAGGGAGGGCTTGGGGAGGGGGAGACTCCATCTCGAGGTCCACGTG
GCTGGGGCACGGAGGCAGGCGGCGGCAGTAGGGAGAAGGCAATAGGTGCG
GCATGCGTCGAGGAGGAGGACGAGGGCACGGGTGAAGAAAAGGGTCAGCA
CCAGCACCAGCACCACCAGCACCACCAGCACCACCAGCACCAGCATGAGT
ACCAGCACCAGCAGCACCACCAGCACCAGCACCACCAGCACCAGCACCAG
CACCGGCAGCAACTCACTAACCCCCCTCCCTCTCACCCGTCCTCCACCTT
CCAAACGCCCTCCAAAAATAAAGAAGCCCTCAGCGGCAATGTCTCGCCCT
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCATGACTCCGTCTTTC
TCGGCCTCGGCATCGCTGCCTGACCTGGCGTCCCCTCCCATGCACCTGCA
GCATGCGGCAAGGACCAAGGGAGGGGGGAAGGGAGAGAGTGAAGGGGCGG
GGGGGAGGATCAAGAGTGGGCTGCTTTTGAGTTCCGTGCCCGCTGTGGTG
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGAAGG
AGGAGGAGGAGGAGGAGGAGGGCGGGGGGACGCAGACAGGGGAGAAGGAG
GGGACGTAGACGGCAAGAAAGCACTTTGAAAGAATGGAGAAGGAGGGGGA
GGAACGGAGGGAGGGGGAGATGGAGAGATGAATGTGCATACCCAGTTTGA
TCGAGAATGTAACAGATGCGGCACGAGAAACACCATGTGTGATGAATGAC
AAGAAGGAAGCAAGGCCAAGACAAGCGGGAAAGTAAGCCGACAACCACCA
CTAATGTCAGTAGCACACTACGCAGTAGCTTAGTGTAACGGTAGCATCAG
TCGCAGCGACCGCAGAACAATCGGAAAAAGAGATAAAAAAGAAGGAAAAA
CTCGTGTTCTCAGA
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protein sequence of NO27G01290.1

>NO27G01290.1-protein ID=NO27G01290.1-protein|Name=NO27G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MDPTALQRAFLNLPNPTSILIADTMAPPVATVAATPLLPHDKDAFPPSLP
PSPVTAEEGSLFMPIAGSSSCSSTPSSSGTASLLLPATINSFPSLMEQAS
TVEGRPEGGREGKVGGPHLQAYPRLDPALPHKDLGDSPSRLAASKIPNHQ
GPKLALPPSLPPLTFSPSTGGGGREGGREGGRGIGLHDVLEAVMRGGGNL
PPEAPRVEPLPVAIHVLACLLFSLSLLVALVWLRFEKDILDSLDLPGRMG
GREASRQKRRRRKGSMGGEGDGGEEKEGECEWCVLCQKEREGEKEEGMRR
GRGEGGGINGVCALEKVREGGLGEGETPSRGPRGWGTEAGGGSREKAIGA
ACVEEEDEGTGEEKGQHQHQHHQHHQHHQHQHEYQHQQHHQHQHHQHQHQ
HRQQLTNPPPSHPSSTFQTPSKNKEALSGNVSPSLPPSLPPSLPPMTPSF
SASASLPDLASPPMHLQHAARTKGGGKGESEGAGGRIKSGLLLSSVPAVV
GGGGGGGGGGGGGGGEGGGGGGGGRGDADRGEGGDVDGKKAL*
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mRNA from alignment at chr27:416418..419055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01290.1 ID=NO27G01290.1|Name=NO27G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp|location=Sequence derived from alignment at chr27:416418..419055+ (Nannochloropsis oceanica)
ATGGACCCCACCGGTGATATGTATATTGCAATGCTATGACCTACTGTCTT
TTTTGGGCCTGCTTGCCGTGTCAGGGCTAAGTCATCGCAGTCTGGGGCTG
CCAAACTTGATCATCCATCATCCTGGCTGGTGTCTCGGCTCTCCTGCAGT
GCTACGTGAGGAGACAGACTCCTAGCTGTCAAGCCGTCTTCTCACTTCTA
CCCTATTTGTGACCCACCCCCACAGTCGCACAATTAGGTGAAGGCAAGCA
GCCTACTGTCACCCACAAGCCTGTTGCCAGCACCTCAAATGCGGATGGGA
AGTCTCTAAACTGGCTACAGCGCTTCAGCGCGCTTTCTTGAATCTCCCCA
ATCCTACCTCCATCTTAATAGCGGTACGTACAGTGGTGATCCTTTTACAT
ATGTCAATTGCCGCCACAAAATAGTGGTTCCAGCATCCAAGGTTTTAGTT
GGAAGGCGTCGATCGAAAGTGCTTTGCGCTTCCTCCCCCTCTTTCCCTCA
TCCCCCTCGCTCCTCCTGTCCTCGCCGCTCCACCTACAGTCCTTATAACA
TTTGACGGAAACCGCCTTCGTGCCGAGTGGCATCGTTTGCCAATGAATTA
CAGACACTTACCATAGTATACCCTTTCTCTTTCTTCTTTCCATTCGTCAA
CAGGACACCATGGCTCCCCCCGTCGCCACCGTCGCCGCCACCCCGCTGCT
TCCACACGACAAAGACGCCTTCCCTCCCTCCCTCCCTCCCTCTCCTGTCA
CTGCTGAAGAAGGTTCCCTCTTCATGCCGATCGCCGGCAGCAGCAGCTGC
AGCAGCACACCCAGCAGCAGCGGCACAGCGAGCCTCCTCCTCCCAGCCAC
TATCAACTCCTTCCCCTCGCTCATGGAGCAAGCGAGCACCGTCGAGGGAA
GGCCAGAAGGCGGAAGGGAGGGAAAAGTAGGCGGGCCGCACTTGCAGGCC
TATCCGCGCCTCGATCCCGCGCTTCCGCACAAAGACTTGGGGGACTCTCC
TTCCCGTCTAGCCGCCTCCAAAATTCCCAACCATCAAGGGCCCAAGCTTG
CCCTCCCTCCCTCCCTCCCTCCCCTGACTTTTTCGCCGAGCACGGGAGGG
GGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAATTGGGCTGCATGA
TGTATTGGAGGCAGTCATGCGTGGAGGAGGCAATCTTCCTCCAGAGGCCC
CACGAGTGGAGCCACTGGTGAGCAAAAGCAAGGGGGTTGAGAGCAAATGA
GGGAAGGAGGGAGGGAGGGACGTGAAGAGGCTGCTTTCTTTCCAATCACT
CACCTACCTATCCCTCCTCTGCTACCTCCTTCCCTCCATCCCTCCTCCCC
TCAGCCAGTTGCCATTCACGTGCTCGCGTGCCTCCTCTTCTCCCTCTCCC
TCCTCGTCGCCCTTGTCTGGCTGCGTTTCGAGAAGGACATTTTGGACAGC
CTCGATCTTCCGGGGAGGATGGGAGGGAGGGAGGCAAGCAGGCAGAAGAG
GAGGAGAAGGAAGGGGTCGATGGGTGGGGAGGGGGACGGGGGGGAAGAGA
AAGAGGGGGAGTGTGAGTGGTGTGTACTTTGTCAAAAGGAGAGGGAGGGC
GAGAAAGAGGAGGGGATGAGGAGGGGAAGGGGCGAGGGGGGAGGGATAAA
TGGGGTATGTGCGCTGGAGAAAGTGAGGGAGGGAGGGCTTGGGGAGGGGG
AGACTCCATCTCGAGGTCCACGTGGCTGGGGCACGGAGGCAGGCGGCGGC
AGTAGGGAGAAGGCAATAGGTGCGGCATGCGTCGAGGAGGAGGACGAGGG
CACGGGTGAAGAAAAGGGTCAGCACCAGCACCAGCACCACCAGCACCACC
AGCACCACCAGCACCAGCATGAGTACCAGCACCAGCAGCACCACCAGCAC
CAGCACCACCAGCACCAGCACCAGCACCGGCAGCAACTCACTAACCCCCC
TCCCTCTCACCCGTCCTCCACCTTCCAAACGCCCTCCAAAAATAAAGAAG
CCCTCAGCGGCAATGTCTCGCCCTCCCTCCCTCCTTCCCTCCCTCCTTCC
CTCCCTCCCATGACTCCGTCTTTCTCGGCCTCGGCATCGCTGCCTGACCT
GGCGTCCCCTCCCATGCACCTGCAGCATGCGGCAAGGACCAAGGGAGGGG
GGAAGGGAGAGAGTGAAGGGGCGGGGGGGAGGATCAAGAGTGGGCTGCTT
TTGAGTTCCGTGCCCGCTGTGGTGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGTGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGGCGGG
GGGACGCAGACAGGGGAGAAGGAGGGGACGTAGACGGCAAGAAAGCACTT
TGAAAGAATGGAGAAGGAGGGGGAGGAACGGAGGGAGGGGGAGATGGAGA
GATGAATGTGCATACCCAGTTTGATCGAGAATGTAACAGATGCGGCACGA
GAAACACCATGTGTGATGAATGACAAGAAGGAAGCAAGGCCAAGACAAGC
GGGAAAGTAAGCCGACAACCACCACTAATGTCAGTAGCACACTACGCAGT
AGCTTAGTGTAACGGTAGCATCAGTCGCAGCGACCGCAGAACAATCGGAA
AAAGAGATAAAAAAGAAGGAAAAACTCGTGTTCTCAGA
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Coding sequence (CDS) from alignment at chr27:416418..419055+

>NO27G01290.1 ID=NO27G01290.1|Name=NO27G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr27:416418..419055+ (Nannochloropsis oceanica)
ATGGACCCCACCGCGCTTCAGCGCGCTTTCTTGAATCTCCCCAATCCTAC
CTCCATCTTAATAGCGGACACCATGGCTCCCCCCGTCGCCACCGTCGCCG
CCACCCCGCTGCTTCCACACGACAAAGACGCCTTCCCTCCCTCCCTCCCT
CCCTCTCCTGTCACTGCTGAAGAAGGTTCCCTCTTCATGCCGATCGCCGG
CAGCAGCAGCTGCAGCAGCACACCCAGCAGCAGCGGCACAGCGAGCCTCC
TCCTCCCAGCCACTATCAACTCCTTCCCCTCGCTCATGGAGCAAGCGAGC
ACCGTCGAGGGAAGGCCAGAAGGCGGAAGGGAGGGAAAAGTAGGCGGGCC
GCACTTGCAGGCCTATCCGCGCCTCGATCCCGCGCTTCCGCACAAAGACT
TGGGGGACTCTCCTTCCCGTCTAGCCGCCTCCAAAATTCCCAACCATCAA
GGGCCCAAGCTTGCCCTCCCTCCCTCCCTCCCTCCCCTGACTTTTTCGCC
GAGCACGGGAGGGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAA
TTGGGCTGCATGATGTATTGGAGGCAGTCATGCGTGGAGGAGGCAATCTT
CCTCCAGAGGCCCCACGAGTGGAGCCACTGCCAGTTGCCATTCACGTGCT
CGCGTGCCTCCTCTTCTCCCTCTCCCTCCTCGTCGCCCTTGTCTGGCTGC
GTTTCGAGAAGGACATTTTGGACAGCCTCGATCTTCCGGGGAGGATGGGA
GGGAGGGAGGCAAGCAGGCAGAAGAGGAGGAGAAGGAAGGGGTCGATGGG
TGGGGAGGGGGACGGGGGGGAAGAGAAAGAGGGGGAGTGTGAGTGGTGTG
TACTTTGTCAAAAGGAGAGGGAGGGCGAGAAAGAGGAGGGGATGAGGAGG
GGAAGGGGCGAGGGGGGAGGGATAAATGGGGTATGTGCGCTGGAGAAAGT
GAGGGAGGGAGGGCTTGGGGAGGGGGAGACTCCATCTCGAGGTCCACGTG
GCTGGGGCACGGAGGCAGGCGGCGGCAGTAGGGAGAAGGCAATAGGTGCG
GCATGCGTCGAGGAGGAGGACGAGGGCACGGGTGAAGAAAAGGGTCAGCA
CCAGCACCAGCACCACCAGCACCACCAGCACCACCAGCACCAGCATGAGT
ACCAGCACCAGCAGCACCACCAGCACCAGCACCACCAGCACCAGCACCAG
CACCGGCAGCAACTCACTAACCCCCCTCCCTCTCACCCGTCCTCCACCTT
CCAAACGCCCTCCAAAAATAAAGAAGCCCTCAGCGGCAATGTCTCGCCCT
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCATGACTCCGTCTTTC
TCGGCCTCGGCATCGCTGCCTGACCTGGCGTCCCCTCCCATGCACCTGCA
GCATGCGGCAAGGACCAAGGGAGGGGGGAAGGGAGAGAGTGAAGGGGCGG
GGGGGAGGATCAAGAGTGGGCTGCTTTTGAGTTCCGTGCCCGCTGTGGTG
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGAAGG
AGGAGGAGGAGGAGGAGGAGGGCGGGGGGACGCAGACAGGGGAGAAGGAG
GGGACGTAGACGGCAAGAAAGCACTTTGA
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Synonyms
Publications