NO27G00560.1, NO27G00560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00560.1
Unique Name	NO27G00560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2622
Alignment location	chr27:204811..207973 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:204811..207973 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G00560.1 vs.
Match: EWM21041.1 (dihydrokaempferol 4-reductase, partial [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 1.900e-54
Identity = 149/245 (60.82%), Postives = 166/245 (67.76%), Query Frame = 0

Query:    5 SIFTCCLLLFFTLLTSSTAFAASSSLPSSPAPSSSPSSPSSSQPITVCVTGCNGYVASELVKQLLEKGYHVRGTVRKLSGLTKEERERRYGSLERL--SLLAAEAAAAATTATTTSREEGEGGMKRGGCTLPSSTPTLTLHEADLTVPDSFDEAVKGCTYVFHVASPVVYDAKADPRKDILLPALAGVKNVLSAIQKAREEETDGGREEGGKEGG-VTFKRLILTSSTGAVYGGPAAVPKAAAVK 247
            S+FT  LL   +LL+ STAFA SSS P+S AP SS SSPSS  P TVCVTGCNGYVASELVKQLLE+GY+V GTVRKL  LT+EERE +YG L +L                    +E+  G    G          LTL EADL  P SFD AV+GCTYVFHVASPVVY + ADP  D+L PAL GV+NVL AIQ +R EE  GGR EGGKEGG   FKRLILTSSTGAVYGGP AVPK+A  K
Sbjct:   36 SLFT--LLFLSSLLSCSTAFA-SSSPPTSTAPPSS-SSPSSFPPTTVCVTGCNGYVASELVKQLLERGYNVHGTVRKLHKLTEEEREEKYGPLAKLGRGRGGGGGGGQGERVGRHRKEDSRGSCDEGVGDGEKGRGCLTLFEADLRQPHSFDAAVRGCTYVFHVASPVVYASGADPETDLLEPALEGVRNVLRAIQDSRREE--GGR-EGGKEGGRERFKRLILTSSTGAVYGGPTAVPKSALEK 273

The following BLAST results are available for this feature:

BLAST of NO27G00560.1 vs.

BLAST of NO27G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21041.1	1.900e-54	60.82	dihydrokaempferol 4-reductase, partial [Nannochlor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00560	NO27G00560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00560.1	NO27G00560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00560.1.cds1	NO27G00560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00560.1.cds2	NO27G00560.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00560.1.cds3	NO27G00560.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00560.1.cds4	NO27G00560.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:204811..207973+
coding sequence from alignment at chr27:204811..207973+

mRNA sequence

>NO27G00560.1 ID=NO27G00560.1|Name=NO27G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2622bp
GTTGTGATGTCAAAGGAAGGAGGGAGGGAGGGAAGGAGGGTATGAAAGAC
GGTTATGAGATCGCGAGGGATAATTAAAACAAGAAAGGCATGATTTTATA
TTTGCGTGAGCGCAAGCCTCTCTGTGCGGCAACAAGAGGCAACGGGTGGT
GGTTCGGAAGGGAGGGATAGGTCTGTCTTGCCCACTCATTCCCGCCCTCT
CAATGAACCCACATAGGGCCCTCTCAAAATGAGGGAGTAGGAAACAACGC
GGAGAGAACCGTAGGGGTATACGTCAAGGATGGGCAACAAGCAAAGTGTG
CGATAAAGGTGTGGCATATGTATGCATGGCTTTCCACTGCGTGGTTTGTT
CCGTGGGGGGCAGGAGGTGACGACCGCCTGGCCTAGCCACAGACAGGCTG
GAAGAAGCATCCAGGCTGAAGTCCCAAGGCCGATACGCAGGCATGCACAT
AGTTTATAGCGTAAGAGCCATTGCCGCTGCGGCTGCTGCTGCAGCAGCCG
CAGCGGCAGCTGCTGGACACAAGGGGTAAGGGTAGCGTTGTGGTGGTCGG
CCGCCCTAGGCGCGGCAAGCTTCCGTCCTCAAAAGCTGAAAGCAATTACT
CCCTTTGCCCCGACGCCGCGGTGCCGCATCCTTCCGTGCCGACAACAAGC
GTTCAGTGTCGTCTGCGTTGACTGCTTTTGGATTGATGGGATGTTGGTGT
GTGGCTTGTGTGTGGTGTATGCTTTATGCGGAGGGCAAGGAGATATCGGT
CCTTCGCGCCACCTCGTTGCTTTTCGGTTATGCTACAAGATGGGTTGAAC
CCAGCACAGCACCAGAGGTGAGCACAGGGAGACACGTAGGCAACAAAAAG
GTTTATTTAATCCACATGGAGGCAGTCTGAAGCTGAAGCTTTGTGAGGTG
TTCCCCAGGAATGCCCGATTTTCTTTTCATTGACCTCCTCACCCCACCGA
AAGACATCTAAATTTCTGGTTCGACATGAACTTATCTCTTCCTACGACAC
GCCCATGAAGGACACATTTGGTGCCCTACGACGTGGTCCGGAGATCCTTT
TCTGTGCACTCCGACCGCGCCACTCGTCGCCACCTAGCCCCCATCACCTC
CTTTTTCTCCTCCTCGTCGTACCCCAGCACACTCCCGCTTTACATCCCGT
GCCTTGTCCCCCTCTAATCGCTCCTCGTAGTGCCAAGCAATCAAGAAATG
AACCACTCCTCGATCTTCACCTGCTGCCTCCTCCTTTTCTTCACCCTCCT
CACCTCCTCCACCGCCTTCGCCGCCTCTTCCTCCCTGCCATCCTCCCCTG
CGCCCTCCTCTTCCCCGTCCTCCCCCTCATCCTCCCAACCAATCACCGTC
TGCGTCACTGGCTGCAATGGTTACGTTGCCTCCGAATTAGTCAAGCAATT
GTTAGAAAAAGGTTATCACGTTAGGGGGACCGTGAGGAAGCTGAGCGGGT
TGACCAAGGAAGAAAGGGAGAGGCGATATGGCTCCTTGGAACGCCTTTCA
TTACTAGCAGCAGAAGCAGCAGCAGCAGCAACAACAGCAACAACAACAAG
TAGAGAAGAAGGAGAAGGAGGGATGAAAAGAGGGGGGTGTACTTTACCCT
CATCTACCCCCACCCTCACCTTACACGAAGCGGACCTGACCGTGCCCGAC
TCTTTCGACGAGGCCGTAAAAGGCTGCACGTATGTCTTCCATGTCGCCTC
CCCCGTCGTATATGATGCCAAAGCGGATCCCCGCAAAGACATTCTCCTTC
CTGCCCTTGCCGGCGTCAAGAACGTGCTGTCCGCGATCCAGAAGGCACGG
GAAGAGGAGACGGATGGAGGGAGAGAGGAGGGAGGGAAGGAGGGAGGGGT
GACATTCAAAAGGCTAATCTTGACCTCGTCCACTGGTGCGGTGTATGGGG
GGCCAGCGGCGGTGCCCAAGGCAGCAGCAGTAAAAGAGAAGGAGGGATGG
AGGGGGGACACGGAGGGAAGGGAGGAAGCATTGTTCACTGAGGAGGACTG
GAACGAGGAGTGCTCCTTGTCGGTGTTGCCCTACTATTACTCGAAGGTCA
TGGCCGAGAGGGAGGGGTGGAGGAAGGCAGAAAAAGAGGGCATCGATCTG
GTGGTGGTCTGTCCATCTTACGTCTGGGGTCCCCCGGCGGTCAAAGGGGC
AGGGAGTTTCAATACAGCCCGGCTGCGCGCCATCCTGAAGGGTGAGGAAA
CTCCTTGGACGTTCGATTTTCCTGTGTGTGATACCCGGGATATAGCTGCC
GTTCAAATCGCTGCCGCAGAGAAACAAGACGCGCATGGCCGCTTTATTAT
TTCGTCTTCCAAGACGATATCTCCTTCCTGGGTCATTGGCGTTGTTCATC
GTCGCTTCCCAGGACGCTTTCCTCACCTAGGGAAGGAAAGGGGGAAGGAA
GGGGGGAAGGAGGGGGGGAAGGAGGGGGGGAAGGAAGTGAAGAGTAGGAG
GGTGTTTGATGTCAGCAAGGTGGAGGCGCTGTTAGGGCGGCCGTTGAAGG
CCCCGGAAGAAACGTTGAGGGACATGGTGCAGGCCATGCTGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGTGGCGGCGAG
TCCGAGTCAGAAGGGTGTATGA

protein sequence of NO27G00560.1

>NO27G00560.1-protein ID=NO27G00560.1-protein|Name=NO27G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MNHSSIFTCCLLLFFTLLTSSTAFAASSSLPSSPAPSSSPSSPSSSQPIT
VCVTGCNGYVASELVKQLLEKGYHVRGTVRKLSGLTKEERERRYGSLERL
SLLAAEAAAAATTATTTSREEGEGGMKRGGCTLPSSTPTLTLHEADLTVP
DSFDEAVKGCTYVFHVASPVVYDAKADPRKDILLPALAGVKNVLSAIQKA
REEETDGGREEGGKEGGVTFKRLILTSSTGAVYGGPAAVPKAAAVKEKEG
WRGDTEGREEALFTEEDWNEECSLSVLPYYYSKVMAEREGWRKAEKEGID
LVVVCPSYVWGPPAVKGAGSFNTARLRAILKGEETPWTFDFPVCDTRDIA
AVQIAAAEKQDAHGRFIISSSKTISPSWVIGVVHRRFPGRFPHLGKERGK
EGGKEGGKEGGKEVKSRRVFDVSKVEALLGRPLKAPEETLRDMVQAMLEE
EEEEEEEGEEEEGEVAASPSQKGV*

mRNA from alignment at chr27:204811..207973+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00560.1 ID=NO27G00560.1|Name=NO27G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=3163bp|location=Sequence derived from alignment at chr27:204811..207973+ (Nannochloropsis oceanica)
GTTGTGATGTCAAAGGAAGGAGGGAGGGAGGGAAGGAGGGTATGAAAGAC
GGTTATGAGATCGCGAGGGATAATTAAAACAAGAAAGGCATGATTTTATA
TTTGCGTGAGCGCAAGCCTCTCTGTGCGGCAACAAGAGGCAACGGGTGGT
GGTTCGGAAGGGAGGGATAGGTCTGTCTTGCCCACTCATTCCCGCCCTCT
CAATGAACCCACATAGGGCCCTCTCAAAATGAGGGAGTAGGAAACAACGC
GGAGAGAACCGTAGGGGTATACGTCAAGGATGGGCAACAAGCAAAGTGTG
CGATAAAGGTGTGGCATATGTATGCATGGCTTTCCACTGCGTGGTTTGTT
CCGTGGGGGGCAGGAGGTGACGACCGCCTGGCCTAGCCACAGACAGGCTG
GAAGAAGCATCCAGGCTGAAGTCCCAAGGCCGATACGCAGGCATGCACAT
AGTTTATAGCGTAAGAGCCATTGCCGCTGCGGCTGCTGCTGCAGCAGCCG
CAGCGGCAGCTGCTGGACACAAGGGGTAAGGGTAGCGTTGTGGTGGTCGG
CCGCCCTAGGCGCGGCAAGCTTCCGTCCTCAAAAGCTGAAAGCAATTACT
CCCTTTGCCCCGACGCCGCGGTGCCGCATCCTTCCGTGCCGACAACAAGC
GTTCAGTGTCGTCTGCGTTGACTGCTTTTGGATTGATGGGATGTTGGTGT
GTGGCTTGTGTGTGGTGTATGCTTTATGCGGAGGGCAAGGAGATATCGGT
CCTTCGCGCCACCTCGTTGCTTTTCGGTTATGCTACAAGATGGGTTGAAC
CCAGCACAGCACCAGAGGTGAGCACAGGGAGACACGTAGGCAACAAAAAG
GTTTATTTAATCCACATGGAGGCAGTCTGAAGCTGAAGCTTTGTGAGGTG
TTCCCCAGGAATGCCCGATTTTCTTTTCATTGACCTCCTCACCCCACCGA
AAGACATCTAAATTTCTGGTTCGACATGAACTTATCTCTTCCTACGACAC
GCCCATGAAGGACACATTTGGTGCCCTACGACGTGGTCCGGAGATCCTTT
TCTGTGCACTCCGACCGCGCCACTCGTCGCCACCTAGCCCCCATCACCTC
CTTTTTCTCCTCCTCGTCGTACCCCAGCACACTCCCGCTTTACATCCCGT
GCCTTGTCCCCCTCTAATCGCTCCTCGTAGTGCCAAGCAATCAAGAAATG
AACCACTCCTCGATCTTCACCTGCTGCCTCCTCCTTTTCTTCACCCTCCT
CACCTCCTCCACCGCCTTCGCCGCCTCTTCCTCCCTGCCATCCTCCCCTG
CGCCCTCCTCTTCCCCGTCCTCCCCCTCATCCTCCCAACCAATCACCGTC
TGCGTCACTGGCTGCAATGGTTACGTTGCCTCCGAATTAGTCAAGCAATT
GTTAGAAAAAGGTTATCACGTTAGGGGGACCGTGAGGAAGCTGAGCGGGT
TGACCAAGGAAGAAAGGGAGAGGCGATATGGCTCCTTGGAACGCCTTTCA
TTACTAGCAGCAGAAGCAGCAGCAGCAGCAACAACAGCAACAACAACAAG
TAGAGAAGAAGGAGAAGGAGGGATGAAAAGAGGGGGGTGTACTTTACCCT
CATCTACCCCCACCCTCACCTTACACGAAGCGGACCTGACCGTGCCCGAC
TCTTTCGACGAGGCCGTAAAAGGCTGCACGTATGTCTTCCATGTCGCCTC
CCCCGTCGTATATGATGCCAAAGCGGATCCCCGCAAAGACATTCTCCTTC
CTGCCCTTGCCGGCGTCAAGAACGTGCTGTCCGCGATCCAGAAGGCACGG
GAAGAGGAGACGGATGGAGGGAGAGAGGAGGGAGGGAAGGAGGGAGGGGT
GACATTCAAAAGGCTAATCTTGACCTCGTCCACTGGTGCGGTGTATGGGG
GGCCAGCGGCGGTGCCCAAGGCAGCAGCAGTAAAAGAGAAGGAGGGATGG
AGGGGGGACACGGAGGGAAGGGAGGAAGCATTGTTCACTGAGGAGGACTG
GAACGAGGAGTGCTCCTTGTCGGTGTTGCCCTACTATTACTCGAAGGTCA
TGGCCGAGAGGGAGGGGTGGAGGAAGGCAGAAAAAGAGGTACGTGCATGA
TGTGTGGGCTTGCTGGCGGTCAAGAGGGAGGGAAGGTCTCGCATCCATCG
GAGAATATTGTCTGTCATAGACTCAACATTTCTATCCACGCACCTTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTATTTCCCTCCCTCAGGG
CATCGATCTGGTGGTGGTCTGTCCATCTTACGTCTGGGGTCCCCCGGCGG
TCAAAGGGGCAGGGAGTTTCAATACAGGTACGACGAGGGAGGGAGGAAGT
GAGGGAGTGAGGGAGTGTTGAAGGATCCCTTCCACTTTTTTGGGACACAC
GCACACTGCACACCGACATCCCTCCCTCCCTTCCTCCCTTCCTAGCCCGG
CTGCGCGCCATCCTGAAGGGTGAGGAAACTCCTTGGACGTTCGATTTTCC
TGTGTGTGATACCCGGGATATAGCTGCCGTTCAAATCGCTGCCGCAGAGA
AACAAGACGCGCATGGCCGGTACGTCCCGTCCCTCCCTCCCTCCCTCCCT
CCACCTTTCCTTCTCCTCTTCCCTCATATGTGTATATAACATGAATACAT
TTTTTATGTTTATTAAATAGTAAGAAAATTAAAAGAAAAACAAATAAATA
AGTAAAAATAACCAAATATATAAGAGCATGACCGTCACATTCCCTCCCTT
GCTTCCTCCCTCAGCTGGATTTCCTCATCACTGCTCCCTCCCTCCTTTCC
ACCCACCCTCCCTCCCTTCCTCCCTCCGCCAGCTTTATTATTTCGTCTTC
CAAGACGATATCTCCTTCCTGGGTCATTGGCGTTGTTCATCGTCGCTTCC
CAGGACGCTTTCCTCACCTAGGGAAGGAAAGGGGGAAGGAAGGGGGGAAG
GAGGGGGGGAAGGAGGGGGGGAAGGAAGTGAAGAGTAGGAGGGTGTTTGA
TGTCAGCAAGGTGGAGGCGCTGTTAGGGCGGCCGTTGAAGGCCCCGGAAG
AAACGTTGAGGGACATGGTGCAGGCCATGCTGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGTGGCGGCGAGTCCGAGTCA
GAAGGGTGTATGA

Coding sequence (CDS) from alignment at chr27:204811..207973+

>NO27G00560.1 ID=NO27G00560.1|Name=NO27G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr27:204811..207973+ (Nannochloropsis oceanica)
ATGAACCACTCCTCGATCTTCACCTGCTGCCTCCTCCTTTTCTTCACCCT
CCTCACCTCCTCCACCGCCTTCGCCGCCTCTTCCTCCCTGCCATCCTCCC
CTGCGCCCTCCTCTTCCCCGTCCTCCCCCTCATCCTCCCAACCAATCACC
GTCTGCGTCACTGGCTGCAATGGTTACGTTGCCTCCGAATTAGTCAAGCA
ATTGTTAGAAAAAGGTTATCACGTTAGGGGGACCGTGAGGAAGCTGAGCG
GGTTGACCAAGGAAGAAAGGGAGAGGCGATATGGCTCCTTGGAACGCCTT
TCATTACTAGCAGCAGAAGCAGCAGCAGCAGCAACAACAGCAACAACAAC
AAGTAGAGAAGAAGGAGAAGGAGGGATGAAAAGAGGGGGGTGTACTTTAC
CCTCATCTACCCCCACCCTCACCTTACACGAAGCGGACCTGACCGTGCCC
GACTCTTTCGACGAGGCCGTAAAAGGCTGCACGTATGTCTTCCATGTCGC
CTCCCCCGTCGTATATGATGCCAAAGCGGATCCCCGCAAAGACATTCTCC
TTCCTGCCCTTGCCGGCGTCAAGAACGTGCTGTCCGCGATCCAGAAGGCA
CGGGAAGAGGAGACGGATGGAGGGAGAGAGGAGGGAGGGAAGGAGGGAGG
GGTGACATTCAAAAGGCTAATCTTGACCTCGTCCACTGGTGCGGTGTATG
GGGGGCCAGCGGCGGTGCCCAAGGCAGCAGCAGTAAAAGAGAAGGAGGGA
TGGAGGGGGGACACGGAGGGAAGGGAGGAAGCATTGTTCACTGAGGAGGA
CTGGAACGAGGAGTGCTCCTTGTCGGTGTTGCCCTACTATTACTCGAAGG
TCATGGCCGAGAGGGAGGGGTGGAGGAAGGCAGAAAAAGAGGGCATCGAT
CTGGTGGTGGTCTGTCCATCTTACGTCTGGGGTCCCCCGGCGGTCAAAGG
GGCAGGGAGTTTCAATACAGCCCGGCTGCGCGCCATCCTGAAGGGTGAGG
AAACTCCTTGGACGTTCGATTTTCCTGTGTGTGATACCCGGGATATAGCT
GCCGTTCAAATCGCTGCCGCAGAGAAACAAGACGCGCATGGCCGCTTTAT
TATTTCGTCTTCCAAGACGATATCTCCTTCCTGGGTCATTGGCGTTGTTC
ATCGTCGCTTCCCAGGACGCTTTCCTCACCTAGGGAAGGAAAGGGGGAAG
GAAGGGGGGAAGGAGGGGGGGAAGGAGGGGGGGAAGGAAGTGAAGAGTAG
GAGGGTGTTTGATGTCAGCAAGGTGGAGGCGCTGTTAGGGCGGCCGTTGA
AGGCCCCGGAAGAAACGTTGAGGGACATGGTGCAGGCCATGCTGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGTGGCGGC
GAGTCCGAGTCAGAAGGGTGTATGA

Synonyms

Publications