NO27G00440.1, NO27G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00440.1
Unique NameNO27G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1502
Alignment locationchr27:164172..165989 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:164172..165989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00440.1 vs.
Match: EWM25706.1 (Membrane associated eicosanoid/glutathione metabolism-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 268.1 bits (684), Expect = 1.900e-68
Identity = 134/178 (75.28%), Postives = 151/178 (84.83%), Query Frame = 0 
Query:    1 MPVNLLAVLNE------PNAPLQATAAATLALLVKHIVTVFAQGGARFGAGMRPPEDVCFMPQAGTQSFDGTAKTAEKGNEDKGLKKAKEIEQRWTRIVANDLENIPLGLIIAWGALQSPLSASAHIVLVFSFAVSRVLHTVTYAMGKQPHRAITFFGGLLSVVGLSINGLLGALGKK 173
            MP ++LA  NE      PNAPLQATA A+L LLVKHI+TVF QGGARFGAGMRPPEDVCFMP+AG QSFDGTAK AE+GNEDK LKKA + EQRWTRIVANDLENIPLGLIIAWG+LQSP S  AH+VLV +F VSR+LHTVTYA GKQPHRA+ FFGG+L+VVG+ +NG+LGA  KK
Sbjct:    1 MPSHVLAAFNENAFLGGPNAPLQATAVASLTLLVKHILTVFVQGGARFGAGMRPPEDVCFMPKAGKQSFDGTAKAAERGNEDKALKKALQNEQRWTRIVANDLENIPLGLIIAWGSLQSPRSPPAHVVLVLAFTVSRILHTVTYAAGKQPHRALAFFGGVLAVVGMGVNGVLGAFAKK 178
The following BLAST results are available for this feature:
BLAST of NO27G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25706.11.900e-6875.28Membrane associated eicosanoid/glutathione metabol... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00440NO27G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00440.1NO27G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00440.1.cds1NO27G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00440.1.cds2NO27G00440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00440.1 ID=NO27G00440.1|Name=NO27G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
ATTTAATTTTAATTGACAATCCCTTCGCAGCATTTCGTGATGCTTCTATT
ATATTGACTTTGCTTCGCTGTATAATAGGTGAAGGGAGCAAGCAGTAGCT
GTTCGAGTGGGTATAACGAGGCGGTAAAACTACTTTCCTTTAAATCTCCA
GTCTAGTTTTTGCTTATCAATGTCACTCTGTTGATGTCAAATTTTGACTG
GCACACACCTGTAGTGGTTTATGGTACAGAAATATAAGGCAATTGCTTGT
CTTCTTGCTTTTGTTTGGCCCACCAAATCCTTTTTATGACTGACCGCGTG
CCCCGCGCAGGATAGAAAGTATTGTTTCCTAATCGTTGCATACTGAAGCT
AGGTCTGGATGCAGCAGTGTCAATCGGCAGCGTCCCAGTACGCAATGTGC
CGAGGGACGAACAATACACGGCTCTTCAACAGCGAGGTCAACCGACTCTC
CACGCACCGGCCTGCTGAACTTGCCCTCGCCTTGTGATGCTTTCGAAGTT
CACAGTGAGCCATGCACACCTTCTTTCGATCGACCACATCTAGCTGGCTA
CTTGTCGGCGTGTTAACGAGGCAACGGCTACTCCTGCCGCTCAAGATCAA
CCCAACCTCCTCATGACATACTCCCTCCCCTTACCTCTCACTTGACAGAA
CTTCTGAAGGCGTCATGCCCGTCAATCTCCTCGCGGTGCTCAACGAGCCC
AATGCACCCCTTCAAGCCACGGCCGCCGCGACGCTGGCCTTACTGGTCAA
GCACATTGTCACCGTGTTTGCACAGGGAGGCGCGCGCTTCGGGGCGGGGA
TGCGCCCGCCTGAAGACGTGTGTTTTATGCCCCAAGCCGGGACGCAGTCT
TTCGATGGTACTGCCAAGACGGCAGAAAAAGGGAATGAGGATAAAGGTTT
GAAGAAGGCAAAGGAGATTGAGCAACGCTGGACGCGTATCGTCGCGAATG
ATTTGGAGAACATTCCGCTGGGTTTGATCATTGCTTGGGGCGCACTTCAA
TCTCCCCTCTCCGCTTCTGCGCATATCGTCCTCGTCTTCTCCTTCGCCGT
TTCCCGAGTCCTGCATACCGTGACATATGCAATGGGAAAGCAACCTCATC
GTGCCATCACGTTTTTTGGGGGGCTCTTATCGGTGGTGGGACTGAGCATC
AATGGTTTGCTAGGCGCGCTGGGGAAGAAGTAGGAGAATAGATTCTCCCT
CCCTTGCTCCCTCCCTCTCTCGCTCCCTTGCTTTCTCCCTTCCTTATTTC
TTACTTTCTTTTCTCAGATTAAGGCAGGACGACAATGAATGAATACGTTC
GAAAAGAAAGGAAAAAGCGAAGCGAAGTGAGCGGCCTCTCGGTAACACGC
GTATCCCCATCTTTGCTAATTTCGCTTTCCCTATTCCTGTGTGGGTACAT
TGACTGGTTCTTACACCGCTGAATAAAGAAAGGGGCGAGGGATGAACGGA
GCAAGGAAGAAGAGGAAAGGAGAGAATTAGAAAAAAGAGATAAAGTGATG
AT
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protein sequence of NO27G00440.1

>NO27G00440.1-protein ID=NO27G00440.1-protein|Name=NO27G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MPVNLLAVLNEPNAPLQATAAATLALLVKHIVTVFAQGGARFGAGMRPPE
DVCFMPQAGTQSFDGTAKTAEKGNEDKGLKKAKEIEQRWTRIVANDLENI
PLGLIIAWGALQSPLSASAHIVLVFSFAVSRVLHTVTYAMGKQPHRAITF
FGGLLSVVGLSINGLLGALGKK*
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mRNA from alignment at chr27:164172..165989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00440.1 ID=NO27G00440.1|Name=NO27G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr27:164172..165989+ (Nannochloropsis oceanica)
ATTTAATTTTAATTGACAATCCCTTCGCAGCATTTCGTGATGCTTCTATT
ATATTGACTTTGCTTCGCTGTATAATAGGTGAAGGGAGCAAGCAGTAGCT
GTTCGAGTGGGTATAACGAGGCGGTAAAACTACTTTCCTTTAAATCTCCA
GTCTAGTTTTTGCTTATCAATGTCACTCTGTTGATGTCAAATTTTGACTG
GCACACACCTGTAGTGGTTTATGGTACAGAAATATAAGGCAATTGCTTGT
CTTCTTGCTTTTGTTTGGCCCACCAAATCCTTTTTATGACTGACCGCGTG
CCCCGCGCAGGATAGAAAGTATTGTTTCCTAATCGTTGCATACTGAAGCT
AGGTCTGGATGCAGCAGTGTCAATCGGCAGCGTCCCAGTACGCAATGTGC
CGAGGGACGAACAATACACGGCTCTTCAACAGCGAGGTCAACCGACTCTC
CACGCACCGGCCTGCTGAACTTGCCCTCGCCTTGTGATGCTTTCGAAGTT
CACAGTGAGCCATGCACACCTTCTTTCGATCGACCACATCTAGCTGGCTA
CTTGTCGGCGTGTTAACGAGGCAACGGCTACTCCTGCCGCTCAAGATCAA
CCCAACCTCCTCATGACATACTCCCTCCCCTTACCTCTCACTTGACAGAA
CTTCTGAAGGCGTCATGCCCGTCAATCTCCTCGCGGTGCTCAACGAGCCC
AATGCACCCCTTCAAGCCACGGCCGCCGCGACGCTGGCCTTACTGGTCAA
GCACATTGTCACCGTGTTTGCACAGGGAGGCGCGCGCTTCGGGGCGGGGA
TGCGCCCGCCTGAAGACGTGTGTTTTATGCCCCAAGCCGGGACGCAGTCT
TTCGATGGTACTGCCAAGACGGCAGAAAAAGGGAATGAGGATAAAGGTTT
GAAGAAGGCAAAGGAGATTGAGCAACGCTGGACGCGTATCGTCGCGAATG
ATTTGGAGAACATTCCGCTGGTACGTCTTTTCCCCCTCCATCGTCTCCTT
CGCCTGCTTTCCTTTTACGCTCATCTAGTACGTCCCGATCCCGATGATCA
TACAGAAAAATTAATTGGCATGCTATCATCTGCACAAACTTATATTTTCT
CCCTTCTTTGTCTTTGTTTGGGGCTTTTCCCTCCCTCATCCCCTCCTTTC
CATCCTCTCTCGTTGAATGGGCCTGTTCATTGCTCTAGCCCCTCCTCTCC
ACTCCTATGAACATTAACCTTGTCTTTCTTTTCGTCACGCTCCTTTTTTT
CATACTCTTATTCTCCCCCTCCCCCTTCTGCCTTAGGGTTTGATCATTGC
TTGGGGCGCACTTCAATCTCCCCTCTCCGCTTCTGCGCATATCGTCCTCG
TCTTCTCCTTCGCCGTTTCCCGAGTCCTGCATACCGTGACATATGCAATG
GGAAAGCAACCTCATCGTGCCATCACGTTTTTTGGGGGGCTCTTATCGGT
GGTGGGACTGAGCATCAATGGTTTGCTAGGCGCGCTGGGGAAGAAGTAGG
AGAATAGATTCTCCCTCCCTTGCTCCCTCCCTCTCTCGCTCCCTTGCTTT
CTCCCTTCCTTATTTCTTACTTTCTTTTCTCAGATTAAGGCAGGACGACA
ATGAATGAATACGTTCGAAAAGAAAGGAAAAAGCGAAGCGAAGTGAGCGG
CCTCTCGGTAACACGCGTATCCCCATCTTTGCTAATTTCGCTTTCCCTAT
TCCTGTGTGGGTACATTGACTGGTTCTTACACCGCTGAATAAAGAAAGGG
GCGAGGGATGAACGGAGCAAGGAAGAAGAGGAAAGGAGAGAATTAGAAAA
AAGAGATAAAGTGATGAT
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Coding sequence (CDS) from alignment at chr27:164172..165989+

>NO27G00440.1 ID=NO27G00440.1|Name=NO27G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at chr27:164172..165989+ (Nannochloropsis oceanica)
ATGCCCGTCAATCTCCTCGCGGTGCTCAACGAGCCCAATGCACCCCTTCA
AGCCACGGCCGCCGCGACGCTGGCCTTACTGGTCAAGCACATTGTCACCG
TGTTTGCACAGGGAGGCGCGCGCTTCGGGGCGGGGATGCGCCCGCCTGAA
GACGTGTGTTTTATGCCCCAAGCCGGGACGCAGTCTTTCGATGGTACTGC
CAAGACGGCAGAAAAAGGGAATGAGGATAAAGGTTTGAAGAAGGCAAAGG
AGATTGAGCAACGCTGGACGCGTATCGTCGCGAATGATTTGGAGAACATT
CCGCTGGGTTTGATCATTGCTTGGGGCGCACTTCAATCTCCCCTCTCCGC
TTCTGCGCATATCGTCCTCGTCTTCTCCTTCGCCGTTTCCCGAGTCCTGC
ATACCGTGACATATGCAATGGGAAAGCAACCTCATCGTGCCATCACGTTT
TTTGGGGGGCTCTTATCGGTGGTGGGACTGAGCATCAATGGTTTGCTAGG
CGCGCTGGGGAAGAAGTAG
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Synonyms
Publications