NO27G00410.1, NO27G00410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00410.1
Unique NameNO27G00410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1924
Alignment locationchr27:154537..156682 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:154537..156682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00410NO27G00410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00410.1NO27G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00410.1.cds1NO27G00410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00410.1.cds2NO27G00410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00410.1 ID=NO27G00410.1|Name=NO27G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1924bp
CTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCC
TCGAATCAAATTCTCCGTCGTCCTCTCTCCATTCCCCCCCCTTCCCCGCC
CAACCCTCCCTCCTCCTTCCCTCCTTCCTCCGCTCCCTCAACGACGGCAT
CTCCTTCTTCTGCGGCTTCGTCTCTTTAGGCCCGTCGGCCCAATATCTCC
ACTTTGTCAACCCACCCTTCTCCATCGCGTCCTCCCTCCCTTCCTCGCGC
CTCGATGCCCTCTTCCGCCAACCTCCTCCCTCCCACCCTGGCCTGGTGCC
CGTTTTATGGGCAGATTTCCTCCTTCCCTCCTTCCGTCCCGCTTTCCTCT
CCTCCCTCCTCACTTACCTCCTTTCTCCGCCAACGCGGGGACAGGAGATG
TCGAGCTGCGTCAAAGTGAGGCAGGGAGGGAGGGAGGGGGGGACGGACGG
GGGGAGATTGTGCTTGGCGAGGGCGAGACAGATATTGTTGGGGGAAGGGA
GTTATTGGGCCGTGGCCGTTTCGTTCACTCTACTCCCGAAGGGGCTAGCG
TTGGAGATGGAAGAGGAGGGAGGGATGGAGGAAGGGGGGGAGGAGCAAAG
AGGGCTGGTCTCGGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATAAGG
GGAGGGATGGAGCGTCCAACGCATTTGCACCTGAGGAGGTAATGTCGGTC
TTGGAACATATTTTAGGGAAACAGGAAGTGGAGGAGGGAGGGAGGGGGTT
AGGAAGGGAGGGAGGATGGTTGAAGGGGGAAAGTCCTTTGTCGTCCTCGC
CGTTGGCCTTTTTAAATTCAAATGTGACAAATGCGGAGGGGGAAGGGCAG
CAGAAGAAGAGGAGGGGAAAGGCAGCGGCGGTGACGGAGGAGGGTGAGTT
AAGGACGAAAGGATGGAATGTGGTAAGGACATCAAGACAGGGGAGCTCGA
GAGAGGCAGCAGCAGTTGGAGTAGCAAGAGCAGCGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGA
AGGAGGAGAAGAAGAAGAAGGAGAAGGAGGAGGAGTCATTGAAAGTTTTT
ATCCTCCAGCACACGCAGGCTTCTCGCGTGCTCCCACTTATTCTTCCTCC
TCGTCCTCATCCTCGTCCTCCTCCTTCTCCTCCTCCTTTTCATCCTCCTT
CTCAACGTCTCCTCCCTTCCAACCCCCCCTCCCTTCTCCCTCCCTCCCTC
CCCCTTCTCATGCTGGTCCTCCTACCCACCGTTCTGCCATTGCTCTCCCT
TCTTCCCTCCCTCCCCCTCATCCTACCCCCTCACTTCCAGTGGGGCCACC
TCCCAAGCTCGCGACAGGATTCAAAATATGGTTGCAGCAGGTGACCCAAC
CACCCCGCCAGGGGCCTGCATCTTCGTACATGCCACCTCAAATTCTGCTG
CCTCCAAGAAACAAAACGCAAGGGGCACTGGACGAGGGGGAGGTGGGGAA
GGAGGAGGAGAAGAGGGCGAGAAGGGGAATGGGGGGGGAGGTGGGTGATG
GTGGCGATGGGGGAGGAGGGCTATTTAGGAGTGGCTAGACGAGGAGGGAG
GGAAGGAGGGAGGAAAGGAGGGAGGGAACAAGGTGAATGAGAAATGAAAA
AGAAATGCGATGAGGGAGAAACGTGCCGGTCGATGAAGAGGCAGGGAGGG
AAGGATAGAAGGACGGAGGGAGAGAAGAGGCAAGAATTGGGAAAAATGGT
CGATTTTATACTTAATGGTAAATAAATAGATTATTAATAAATGATAGATA
AATGACAATTAGATGGCAGATAAATGATGATTAGATGATAGGGAATAAAT
AAAGACATAATCAAGAACGCCCAATGAGAGGAAAATAAAAAAAGCAGAGA
GAATCAACCAACCAATAACAGAGA
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protein sequence of NO27G00410.1

>NO27G00410.1-protein ID=NO27G00410.1-protein|Name=NO27G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MSSCVKVRQGGREGGTDGGRLCLARARQILLGEGSYWAVAVSFTLLPKGL
ALEMEEEGGMEEGGEEQRGLVSVEGGREGGREDKGRDGASNAFAPEEVMS
VLEHILGKQEVEEGGRGLGREGGWLKGESPLSSSPLAFLNSNVTNAEGEG
QQKKRRGKAAAVTEEGELRTKGWNVVRTSRQGSSREAAAVGVARAAGGGG
GGGGGGGGEGGEGGEGGEGGEEEEGEGGGVIESFYPPAHAGFSRAPTYSS
SSSSSSSSSFSSSFSSSFSTSPPFQPPLPSPSLPPPSHAGPPTHRSAIAL
PSSLPPPHPTPSLPVGPPPKLATGFKIWLQQVTQPPRQGPASSYMPPQIL
LPPRNKTQGALDEGEVGKEEEKRARRGMGGEVGDGGDGGGGLFRSG*
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mRNA from alignment at chr27:154537..156682+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00410.1 ID=NO27G00410.1|Name=NO27G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2146bp|location=Sequence derived from alignment at chr27:154537..156682+ (Nannochloropsis oceanica)
CTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCC
TCGAATCAAATTCTCCGTCGTCCTCTCTCCATTCCCCCCCCTTCCCCGCC
CAACCCTCCCTCCTCCTTCCCTCCTTCCTCCGCTCCCTCAACGACGGCAT
CTCCTTCTTCTGCGGCTTCGTCTCTTTAGGCCCGTCGGCCCAATATCTCC
ACTTTGTCAACCCACCCTTCTCCATCGCGTCCTCCCTCCCTTCCTCGCGC
CTCGATGCCCTCTTCCGCCAACCTCCTCCCTCCCACCCTGGCCTGGTGCC
CGTTTTATGGGCAGATTTCCTCCTTCCCTCCTTCCGTCCCGCTTTCCTCT
CCTCCCTCCTCACTTACCTCCTTTCTCCGCCAACGCGGGGACAGGAGATG
TCGAGCTGCGTCAAAGTGAGGCAGGGAGGGAGGGAGGGGGGGACGGACGG
GGGGAGATTGTGCTTGGCGAGGGCGAGACAGATATTGTTGGGGGAAGGGA
GTTATTGGGCCGTGGCCGTTTCGTTCACTCTACTCCCGAAGGGGCTAGCG
TTGGAGATGGAAGAGGAGGGAGGGATGGAGGAAGGGGGGGAGGAGCAAAG
AGGGCTGGTCTCGGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATAAGG
GGAGGGATGGAGCGTCCAACGCATTTGCACCTGAGGAGGTAATGTCGGTC
TTGGAACATATTTTAGGGAAACAGGAAGTGGAGGAGGGAGGGAGGGGGTT
AGGAAGGGAGGGAGGATGGTTGAAGGGGGAAAGTCCTTTGTCGTCCTCGC
CGTTGGCCTTTTTAAATTCAAATGTGACAAATGCGGAGGGGGAAGGGCAG
CAGAAGAAGAGGAGGGGAAAGGCAGCGGCGGTGACGGAGGAGGGTGAGTT
AAGGACGAAAGGATGGAATGTGGTAAGGACATCAAGACAGGGGAGCTCGA
GAGAGGCAGCAGCAGTTGGAGTAGCAAGAGCAGCGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGA
AGGAGGAGAAGAAGAAGAAGGAGAAGGAGGAGGAGTCATTGAAAGTTTTT
ATCCTCCAGCACACGCAGGCTTCTCGCGTGCTCCCACTTATTCTTCCTCC
TCGTCCTCATCCTCGTCCTCCTCCTTCTCCTCCTCCTTTTCATCCTCCTT
CTCAACGTCTCCTCCCTTCCAACCCCCCCTCCCTTCTCCCTCCCTCCCTC
CCCCTTCTCATGCTGGTCCTCCTACCCACCGTTCTGCCATTGCTCTCCCT
TCTTCCCTCCCTCCCCCTCATCCTACCCCCTCACTTCCAGTGGGGCCACC
TCCCAAGCTCGCGACAGGATTCAAAATATGGTTGCAGCAGGTAGGGAGGG
AGGGAAGAAGGGAGGGAGGGAGGGAAAGGAAGATAAATTGAGGGGCAGTG
AAGTGAAATAGCCTTCTCGTGTTCGTTTATCCACTTATCTATCCTCCCTC
CCTCCTTCCCAACCTCCTTTGTCCCTCCCTCCTGCCCTCCTGCCTCCCCT
CCTTCCCTACCTCCCCTCGTTCCCTCGTTCCCTCGTTCCCTCGTTCCCTA
ATTCCCTCCCAGGTGACCCAACCACCCCGCCAGGGGCCTGCATCTTCGTA
CATGCCACCTCAAATTCTGCTGCCTCCAAGAAACAAAACGCAAGGGGCAC
TGGACGAGGGGGAGGTGGGGAAGGAGGAGGAGAAGAGGGCGAGAAGGGGA
ATGGGGGGGGAGGTGGGTGATGGTGGCGATGGGGGAGGAGGGCTATTTAG
GAGTGGCTAGACGAGGAGGGAGGGAAGGAGGGAGGAAAGGAGGGAGGGAA
CAAGGTGAATGAGAAATGAAAAAGAAATGCGATGAGGGAGAAACGTGCCG
GTCGATGAAGAGGCAGGGAGGGAAGGATAGAAGGACGGAGGGAGAGAAGA
GGCAAGAATTGGGAAAAATGGTCGATTTTATACTTAATGGTAAATAAATA
GATTATTAATAAATGATAGATAAATGACAATTAGATGGCAGATAAATGAT
GATTAGATGATAGGGAATAAATAAAGACATAATCAAGAACGCCCAATGAG
AGGAAAATAAAAAAAGCAGAGAGAATCAACCAACCAATAACAGAGA
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Coding sequence (CDS) from alignment at chr27:154537..156682+

>NO27G00410.1 ID=NO27G00410.1|Name=NO27G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr27:154537..156682+ (Nannochloropsis oceanica)
ATGTCGAGCTGCGTCAAAGTGAGGCAGGGAGGGAGGGAGGGGGGGACGGA
CGGGGGGAGATTGTGCTTGGCGAGGGCGAGACAGATATTGTTGGGGGAAG
GGAGTTATTGGGCCGTGGCCGTTTCGTTCACTCTACTCCCGAAGGGGCTA
GCGTTGGAGATGGAAGAGGAGGGAGGGATGGAGGAAGGGGGGGAGGAGCA
AAGAGGGCTGGTCTCGGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATA
AGGGGAGGGATGGAGCGTCCAACGCATTTGCACCTGAGGAGGTAATGTCG
GTCTTGGAACATATTTTAGGGAAACAGGAAGTGGAGGAGGGAGGGAGGGG
GTTAGGAAGGGAGGGAGGATGGTTGAAGGGGGAAAGTCCTTTGTCGTCCT
CGCCGTTGGCCTTTTTAAATTCAAATGTGACAAATGCGGAGGGGGAAGGG
CAGCAGAAGAAGAGGAGGGGAAAGGCAGCGGCGGTGACGGAGGAGGGTGA
GTTAAGGACGAAAGGATGGAATGTGGTAAGGACATCAAGACAGGGGAGCT
CGAGAGAGGCAGCAGCAGTTGGAGTAGCAAGAGCAGCGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGG
AGAAGGAGGAGAAGAAGAAGAAGGAGAAGGAGGAGGAGTCATTGAAAGTT
TTTATCCTCCAGCACACGCAGGCTTCTCGCGTGCTCCCACTTATTCTTCC
TCCTCGTCCTCATCCTCGTCCTCCTCCTTCTCCTCCTCCTTTTCATCCTC
CTTCTCAACGTCTCCTCCCTTCCAACCCCCCCTCCCTTCTCCCTCCCTCC
CTCCCCCTTCTCATGCTGGTCCTCCTACCCACCGTTCTGCCATTGCTCTC
CCTTCTTCCCTCCCTCCCCCTCATCCTACCCCCTCACTTCCAGTGGGGCC
ACCTCCCAAGCTCGCGACAGGATTCAAAATATGGTTGCAGCAGGTGACCC
AACCACCCCGCCAGGGGCCTGCATCTTCGTACATGCCACCTCAAATTCTG
CTGCCTCCAAGAAACAAAACGCAAGGGGCACTGGACGAGGGGGAGGTGGG
GAAGGAGGAGGAGAAGAGGGCGAGAAGGGGAATGGGGGGGGAGGTGGGTG
ATGGTGGCGATGGGGGAGGAGGGCTATTTAGGAGTGGCTAG
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Synonyms
Publications