NO27G00380.1, NO27G00380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00380.1
Unique Name	NO27G00380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2010
Alignment location	chr27:138699..141666 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:138699..141666 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G00380.1 vs.
Match: CBJ29003.1 (thylakoid lumenal protein [Ectocarpus siliculosus])

HSP 1 Score: 235.3 bits (599), Expect = 2.000e-58
Identity = 119/170 (70.00%), Postives = 139/170 (81.76%), Query Frame = 0

Query:   75 ALADGATTRFILPPVDMKDTQRCQFKSSNMGQANAARDKLYDLRFCDMSGKDAAGFDLSGAIMAEGTFTGVNFKEAVLSKAYAKSANFENADFSNAVVDRASFDGSKMKGSIFSNAVLSGTSFAGADLTDSDFTDTYMGEFDLKNLCKNPTLSGTNPKTQAPTKESAGCK 245
            ALADG+TT+F LPPV  +   RC FKSS MGQANAARDKLYDLR CDMSGK AAGFDLSG I +E  F+  +FKE V+SKAYA+S+N+E ADF+NAVVDR SFDGS MKG+IF NAVL+ TSF GAD+ ++DFT+ YMG+FD KNLCKNPTL GTNP T A T+ SAGC+
Sbjct:   29 ALADGSTTKFSLPPVG-QGKDRCLFKSSAMGQANAARDKLYDLRECDMSGKSAAGFDLSGVIASEANFSKGDFKEVVMSKAYARSSNWEEADFTNAVVDRVSFDGSSMKGAIFQNAVLTSTSFTGADVENADFTEAYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 197

The following BLAST results are available for this feature:

BLAST of NO27G00380.1 vs.

BLAST of NO27G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ29003.1	2.000e-58	70.00	thylakoid lumenal protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00380	NO27G00380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00380.1	NO27G00380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00380.1.cds1	NO27G00380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00380.1.cds2	NO27G00380.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00380.1.cds3	NO27G00380.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00380.1.cds4	NO27G00380.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00380.1.cds5	NO27G00380.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00380.1.cds6	NO27G00380.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:138699..141666-
coding sequence from alignment at chr27:138699..141666-

mRNA sequence

>NO27G00380.1 ID=NO27G00380.1|Name=NO27G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp
GGAAGGGCCGGGAATGGAGGGGGAGGGGGAGCGGACAAACGCTATGTGTC
GTACGATGTGGGAAGGGAGGGAGGAGGGTAAGATCAGGGGAAGGGTGGGA
GCGAGGCAAGTGCCGATCTCAGAGGCATGATTATTAGGGAGGTCTAGATA
TGGTTCTGGTGACAGGGAGGGGATGGAAGACAGAGAGGGAAAGAGGGAGG
GAGAGGATCGATGTATCAAAATAATGTACCAGATGCGAAGGCTGGGAAAA
GGAGGACGAGGAGGACGAGGAGGTCAAGTTGTGGGGGTCCTTTTATCCGG
GCTGGCATCATAAATGTGCCTTCCCTGTCTGTGTGTGGTTGTAAATGGGT
GCAGGGGGGGGGTGCGTGAGGGAGGCCTCAAAAGGAAAGAGGACACTGGG
CATTGACTCAGGCTCAAATGATGACGGCGTTGGCGAGGCAGGGGAATGGG
GGAGGATGTTGCGCTGGTTGCAGTGAAATATTACGGCTGATGAAAAGGCT
ATTTGCGATCTCTCTTGATGAGTGTGCATTTTGTGGTTGAGGAGTGGTAA
CTGGGCTTCTGTGTGTTTTTTGGGGGGCCTGCCGGTGGTGTGGTCTGTGG
TCAATCAGTAGGCTGGGAAAGGTGGGAGAAGAAACACACGCACGCCTCTA
ATGTTGCCCTTGGCCACGGCACACATCCTTGACCTCGAATAATCCACCCA
CCTGCACACGGATCACACATTCAAAGACAGGTCGGTTTACAAACACTTAT
GCTAGCGCCGCGTCAAGAGGGCTACGCTTGCTTCGACCCGCCATTATCTT
GTATTATAGCCCTGTCTCTCCGACAGTGTCCAAACGCGTCGTTGCTTGAG
GTCACCATTCCCCCCCCCCTCCTCTCATGCGGGATAGACGCACAACCGTC
GCGTGATCACAAGATTCAATGCTCCACGTGTTGTCATGATCATGTTGTTG
TTGCTGTTGGTGTTGAGACCGGGCTATGCAAACTAGATTCCTATTGAGCA
TTCCTCTCTCCCCTGGTTTCACACACATGCCACACATGCTTGCGTAATAA
GCCTTGCCCAACCCACCCACCACTCTATGACACAACCAAACACAGCTCTA
TCAAAACATGCGGGTTACCGTCCTTTTCATGTCGCTTTTGGCCTCCAGCA
AGGCTTTTCTGGTCCCTACCCCACTGCGTCGATCATTGACTGCTATGACC
AGCAGCAGCAAGGACGACACTGCTCCTTTCTCCATCCCCGCCTCCCTACC
TTCCTTTCTCCCTAAGCTTGCCATTGCCTCCCTCCTTTCTTCCTTCGTTC
TTCCCTCCGCATTCATGCCCCCTCTTCCTGCACTTGCCGATGGTGCGACG
ACCCGCTTTATTCTCCCGCCCGTGGATATGAAAGACACACAAAGGTGTCA
ATTTAAGTCCTCCAATATGGGCCAGGCCAATGCCGCCCGGGACAAGCTGT
ACGATTTGCGCTTCTGTGACATGAGCGGGAAAGATGCCGCTGGCTTTGAT
TTGTCGGGGGCCATAATGGCCGAGGGCACTTTCACAGGCGTTAATTTCAA
GGAAGCCGTGCTTAGCAAGGCCTACGCCAAGAGTGCCAACTTTGAGAATG
CAGATTTCAGTAACGCAGTGGTGGATCGCGCGTCTTTTGATGGGTCCAAG
ATGAAGGGCTCCATTTTCAGCAATGCCGTCTTGTCAGGCACCTCTTTCGC
CGGCGCCGATTTGACAGACAGCGATTTCACAGACACCTACATGGGCGAGT
TTGATTTGAAAAATCTTTGCAAGAACCCGACTTTGTCAGGGACCAACCCA
AAGACGCAGGCGCCGACGAAGGAGAGTGCGGGTTGCAAGTGAGGGAGGGA
AAGAGGAAAGGAGGGGGGGACGGGGAAGGAAGAAGGGAGGCGTAGATGGG
ACACACATCATGGATGGTAGAGCTTTGAATCGCGAGTGAATTCAAAGAGC
AAAACAAAAGAAAAAGTGGCGCGAAAAGAAGCCAGCGTCTCCGGAAGACA
TCTCTGAGCA

protein sequence of NO27G00380.1

>NO27G00380.1-protein ID=NO27G00380.1-protein|Name=NO27G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MRVTVLFMSLLASSKAFLVPTPLRRSLTAMTSSSKDDTAPFSIPASLPSF
LPKLAIASLLSSFVLPSAFMPPLPALADGATTRFILPPVDMKDTQRCQFK
SSNMGQANAARDKLYDLRFCDMSGKDAAGFDLSGAIMAEGTFTGVNFKEA
VLSKAYAKSANFENADFSNAVVDRASFDGSKMKGSIFSNAVLSGTSFAGA
DLTDSDFTDTYMGEFDLKNLCKNPTLSGTNPKTQAPTKESAGCK*

mRNA from alignment at chr27:138699..141666-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00380.1 ID=NO27G00380.1|Name=NO27G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2968bp|location=Sequence derived from alignment at chr27:138699..141666- (Nannochloropsis oceanica)
GGAAGGGCCGGGAATGGAGGGGGAGGGGGAGCGGACAAACGCTATGTGTC
GTACGATGTGGGAAGGGAGGGAGGAGGGTAAGATCAGGGGAAGGGTGGGA
GCGAGGCAAGTGCCGATCTCAGAGGCATGATTATTAGGGAGGTCTAGATA
TGGTTCTGGTGACAGGGAGGGGATGGAAGACAGAGAGGGAAAGAGGGAGG
GAGAGGATCGATGTATCAAAATAATGTACCAGATGCGAAGGCTGGGAAAA
GGAGGACGAGGAGGACGAGGAGGTCAAGTTGTGGGGGTCCTTTTATCCGG
GCTGGCATCATAAATGTGCCTTCCCTGTCTGTGTGTGGTTGTAAATGGGT
GCAGGGGGGGGGTGCGTGAGGGAGGCCTCAAAAGGAAAGAGGACACTGGG
CATTGACTCAGGCTCAAATGATGACGGCGTTGGCGAGGCAGGGGAATGGG
GGAGGATGTTGCGCTGGTTGCAGTGAAATATTACGGCTGATGAAAAGGCT
ATTTGCGATCTCTCTTGATGAGTGTGCATTTTGTGGTTGAGGAGTGGTAA
CTGGGCTTCTGTGTGTTTTTTGGGGGGCCTGCCGGTGGTGTGGTCTGTGG
TCAATCAGTAGGCTGGGAAAGGTGGGAGAAGAAACACACGCACGCCTCTA
ATGTTGCCCTTGGCCACGGCACACATCCTTGACCTCGAATAATCCACCCA
CCTGCACACGGATCACACATTCAAAGACAGGTCGGTTTACAAACACTTAT
GCTAGCGCCGCGTCAAGAGGGCTACGCTTGCTTCGACCCGCCATTATCTT
GTATTATAGCCCTGTCTCTCCGACAGTGTCCAAACGCGTCGTTGCTTGAG
GTCACCATTCCCCCCCCCCTCCTCTCATGCGGGATAGACGCACAACCGTC
GCGTGATCACAAGATTCAATGCTCCACGTGTTGTCATGATCATGTTGTTG
TTGCTGTTGGTGTTGAGACCGGGCTATGCAAACTAGATTCCTATTGAGCA
TTCCTCTCTCCCCTGGTTTCACACACATGCCACACATGCTTGCGTAATAA
GCCTTGCCCAACCCACCCACCACTCTATGACACAACCAAACACAGCTCTA
TCAAAACATGCGGGTTACCGTCCTTTTCATGTCGCTTTTGGCCTCCAGCA
AGGCTTTTCTGGTCCCTACCCCACTGCGTCGGTAAGTTGTTGTTCTGTGG
TGGCCCCCTTTCCTTCCCCCCCCCTCCTCCCCTCCCGTTGTTCCGTTTCG
AAGACATTTCCCCACTCTTCCATTATCCCTCGTTCTCACTTGACCCTTTC
CTATAGATCATTGACTGCTATGACCAGCAGCAGCAAGGACGACACTGCTC
CTTTCTCCATCCCCGCCTCCCTACCTTCCTTTCTCCCTAAGCTTGCCATT
GCCTCCCTCCTTTCTTCCTTCGTTCTTCCCTCCGCATTCATGCCCCCTCT
TCCTGCACTTGCCGATGGTGCGACGACCCGCTTTATTCTCCCGCCCGTGG
ATATGAAAGACACACAAAGGTAGGGAGGGAGGAGAGGAGGGAGGGAGAGG
AGGAGGGAGGGAGAGAAGGAGGGAGGGGAGGAGGGAAGGTGATGGTGGTA
GGCTGTATTCGTTGCTCCCGGATTCTCATATGATTTAATTTAATTTAAGA
GTCGATGGTCTATCTATCACTAACTTCTATATAATCACCATGACTCCGTC
CCTCCCTGCCTCCCTCCGTCCCCAGGTGTCAATTTAAGTCCTCCAATATG
GGCCAGGCCAATGCCGCCCGGGACAAGCTGTACGATTTGCGCTTCTGTGA
CATGAGGTGAAAATGGAGGGGAGCGAAAAGAGGGAGAGAGGGAGGAAGAG
CTTTGTAGATGCTCAAGACGACGGTGACTGTCGTTATGTGAAAGCAACAA
TCATCCTTTGCGGTTGCCCGAGCCGCCATCCCTCCCTCATTCTTACTCAT
CCATCCAAACTACCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCATAC
AGCGGGAAAGATGCCGCTGGCTTTGATTTGTCGGGGGCCATAATGGCCGA
GGGCACTTTCACAGGCGTTAATTTCAAGGAAGCCGTGCTTAGCAAGGCCT
ACGCCAAGGTACCTTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCC
CTCCCTCCCTTCCTTCCTTCCTCCATCCCTGCATTTAAAATACGTGTCGA
CCCAAAATATCGATTATCCACCTGCCGTCTTTGCTTTTCCCTGTCCGTCT
TTCCCTCCCTCCTCCCTCCGTCCCGCAGAGTGCCAACTTTGAGAATGCAG
ATTTCAGTAACGCAGTGGTGGATCGCGCGTCTTTTGATGGGTCCAAGATG
AAGGTAGGAAAGGAGGGAGGGAGGGAGGGAGGAAAGAATAGTGAGTGGGA
GATATAGATGGACAACACTTATTTCTGATGCTCTGCATACACTGATTTGT
TTACGTTCTTGATCTTTTTTTAATTTATTGGTTTATAAACTCCAAAATGT
TATGAGTTTATGTGTTTATGTATGTATTTTATCTTATCTTTTTTACGATT
GAGTCAATACAATTCATCTATTTACTTGTTCGTTTCTTCTTCTTCACTTG
GATGCACACTCCAGGGCTCCATTTTCAGCAATGCCGTCTTGTCAGGCACC
TCTTTCGCCGGCGCCGATTTGACAGACAGCGATTTCACAGACACCTACAT
GGGCGAGTTTGATTTGAAAAATCTTTGCAAGAACCCGACTTTGTCAGGGA
CCAACCCAAAGACGCAGGCGCCGACGAAGGAGAGTGCGGGTTGCAAGTGA
GGGAGGGAAAGAGGAAAGGAGGGGGGGACGGGGAAGGAAGAAGGGAGGCG
TAGATGGGACACACATCATGGATGGTAGAGCTTTGAATCGCGAGTGAATT
CAAAGAGCAAAACAAAAGAAAAAGTGGCGCGAAAAGAAGCCAGCGTCTCC
GGAAGACATCTCTGAGCA

Coding sequence (CDS) from alignment at chr27:138699..141666-

>NO27G00380.1 ID=NO27G00380.1|Name=NO27G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr27:138699..141666- (Nannochloropsis oceanica)
ATGCGGGTTACCGTCCTTTTCATGTCGCTTTTGGCCTCCAGCAAGGCTTT
TCTGGTCCCTACCCCACTGCGTCGATCATTGACTGCTATGACCAGCAGCA
GCAAGGACGACACTGCTCCTTTCTCCATCCCCGCCTCCCTACCTTCCTTT
CTCCCTAAGCTTGCCATTGCCTCCCTCCTTTCTTCCTTCGTTCTTCCCTC
CGCATTCATGCCCCCTCTTCCTGCACTTGCCGATGGTGCGACGACCCGCT
TTATTCTCCCGCCCGTGGATATGAAAGACACACAAAGGTGTCAATTTAAG
TCCTCCAATATGGGCCAGGCCAATGCCGCCCGGGACAAGCTGTACGATTT
GCGCTTCTGTGACATGAGCGGGAAAGATGCCGCTGGCTTTGATTTGTCGG
GGGCCATAATGGCCGAGGGCACTTTCACAGGCGTTAATTTCAAGGAAGCC
GTGCTTAGCAAGGCCTACGCCAAGAGTGCCAACTTTGAGAATGCAGATTT
CAGTAACGCAGTGGTGGATCGCGCGTCTTTTGATGGGTCCAAGATGAAGG
GCTCCATTTTCAGCAATGCCGTCTTGTCAGGCACCTCTTTCGCCGGCGCC
GATTTGACAGACAGCGATTTCACAGACACCTACATGGGCGAGTTTGATTT
GAAAAATCTTTGCAAGAACCCGACTTTGTCAGGGACCAACCCAAAGACGC
AGGCGCCGACGAAGGAGAGTGCGGGTTGCAAGTGA

Synonyms

Publications