NO27G00270.3, NO27G00270.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00270.3
Unique Name	NO27G00270.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3215
Alignment location	chr27:92119..98520 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:92119..98520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G00270.3 vs.
Match: XP_024383531.1 (trichohyalin-like [Physcomitrella patens]; XP_024383532.1 trichohyalin-like [Physcomitrella patens]; PNR49830.1 hypothetical protein PHYPA_011726 [Physcomitrella patens])

HSP 1 Score: 76.6 bits (187), Expect = 2.700e-10
Identity = 56/192 (29.17%), Postives = 92/192 (47.92%), Query Frame = 0

Query:  248 TKRAEIFYNNNPGLQGAVNKTSELLMPHFEAGSNQYAIMFNNTHSTLKSNLAPLLGDHHSHWISGFISYGLFLVPLFLSVHSLISIRAVFKLRGMIMFCHMYFAVCSSVAALMAIYLREDPLRLFHESNAGTYVWTQLILGVVFLAYFALQCLAL---FHSNTLDLWISRVVQLLAVTVIGGLYYATVFTPA 437
            T+ +E+F + +   QGA     + L+      S Q    F   +  L S + P LG+ H+  ++  ISY L L+PL L       +R    L+  I+F ++Y AV   +  + A+ L  +P+ +FHE +  +Y+  QL+    ++ Y  LQ   L   +   T     +  VQ++  +VIG  YY TVF  A
Sbjct:  645 TQSSEMFQSKH---QGASKDDPDHLVKKINVFSVQTKTHFVKVNQDLASTITPFLGNRHAPAVASVISYCLLLLPLALIFFVCEQVREFLTLQKAILFANIYLAVHFELLLVAALGLGSEPMEIFHEFSTSSYLVLQLVQAFGYILYLTLQTADLTLAYAEGTAIAKSTSTVQIVVASVIGVHYYITVFLKA 833

The following BLAST results are available for this feature:

BLAST of NO27G00270.3 vs.

BLAST of NO27G00270.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_024383531.1	2.700e-10	29.17	trichohyalin-like [Physcomitrella patens]; XP_0243...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00270	NO27G00270	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00270.3	NO27G00270.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00270.3.cds1	NO27G00270.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds2	NO27G00270.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds3	NO27G00270.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds4	NO27G00270.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds5	NO27G00270.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds6	NO27G00270.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds7	NO27G00270.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds8	NO27G00270.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds9	NO27G00270.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds10	NO27G00270.3.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds11	NO27G00270.3.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds12	NO27G00270.3.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds13	NO27G00270.3.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds14	NO27G00270.3.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds15	NO27G00270.3.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds16	NO27G00270.3.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds17	NO27G00270.3.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00270.3.cds18	NO27G00270.3.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:92119..98520-
coding sequence from alignment at chr27:92119..98520-

mRNA sequence

>NO27G00270.3 ID=NO27G00270.3|Name=NO27G00270.3|organism=Nannochloropsis oceanica|type=mRNA|length=3215bp
CAAAATACAAGGCCCTGGTACAGGTGCCCCCCTTCTCTCTTCTCTCACCC
CACCGAGGCGTTCGAGTAATTGATTGATCAAAGTACATTCACTGTCTTCT
GCTATGTGTATCTCTGTGTGTGTCTTCAAGTGCTTTATCATCCATTTCAC
ACCCCTCGATTGATGGGCAGCAGCAGCACAAAACCGATGTCTCGAATCCA
CCGCTTGGCCCATCATCTCAATACTTTTGCCATGCCCCTTCCCTTTCCCT
GTAACCCACACATTTCGGTCCACCAACCTCTAGTCTCGAAGGCAGAGTAG
ACCAGGTAGAGGCACTTCCAAGAGCCCTATCCCTAAGGCGCGCGCTGCGA
CACTCCTTCACTTGTGTATCTGCCTGCGCCAGTGCCCTCTTGTCCCTTGT
CTGTTTCACGCCCTCTTCTCACGTCACAGACACGCTGGCACTCAAAATAC
AGGGACACTCACCCATTGAGTAGGACTCAATAATGACCTCTCCTACCAGC
ACCTCCACCTTGTGCCGACGGCAGCGCCGTCGCAGTATCCTGCGGCCGTC
GTCGACCTTCTTCTTTCTTCTCCTAGCTGTGTTTCTCCTCCTCCTTCCTG
TGGTGGTGAGGGCCGAAGGGGAAGCTGCGCCTGCTCCTGCCACTGATGCT
GCTGCTGTCGCCCCTCCTGCTCCTGCGGTGGACGAAGCGGCGAAGAAAGC
CGCTGAGGAGGAGGCAGCCAAGAAGGCAGCCGATGAGGAAGCAGCGAAAA
AGAAGGCCGAGGAGGAGGCCGCGGCCAAGAAGGTGGCTGATGAGGAGGAA
GCGAAAAAGAAGGCTGAGGAGGAGGCGAAGAAAAAGATGGAGGAGTCCGC
TGCCGCTGTCGTGAGCACGGAGTCGGCGTCTGTCATGGTTGCCGAGCTCG
AGAAGGCTTTGAAAGCCGACAAGGAGAAACTCATCGGTGAGCTCGAGGCC
CTCAAGAAGACGATGGCGGAAAAAGAGGCTAAGATTAAGGAGCTTGAGGA
AGCCAAGACCAAAGCCGAGGGAGAGCGCGACGGCAAAGGCCGTGAGGTGG
AAGAGAAGAAGGCGCTGCTTGATACCTCCAACAAAGAGCTCGGAGAAGCC
AGGACAAAGATTACGGCGTTGATGATCGTGCAGGAGGACCTGATGAAGCA
GAAGGAGAACCTTCACATGACCTACCAGGAGCTCCGCGACAAGTATGAGA
ACCCCGAGTTCCAGCATTACGTGACCAAACGCGCCGAGATTTTCTACAAC
AACAACCCCGGCCTGCAGGGAGCCGTGAACAAGACCAGCGAGCTCCTCAT
GCCTCACTTCGAAGCCGGCTCCAACCAGTACGCCATTATGTTCAACAACA
CCCACAGCACCCTCAAGTCTAATCTAGCCCCTCTTCTTGGAGACCATCAT
TCGCATTGGATCTCCGGATTTATCTCCTACGGCCTCTTCCTCGTCCCTCT
CTTTCTCTCTGTTCACTCCCTCATCTCCATCCGCGCCGTGTTCAAGCTCC
GAGGCATGATCATGTTCTGCCATATGTACTTCGCCGTCTGCTCGTCTGTG
GCCGCCCTCATGGCCATTTATTTGCGCGAAGACCCGCTGCGGCTCTTCCA
CGAGTCCAACGCGGGCACGTACGTGTGGACTCAGCTCATTCTCGGCGTGG
TGTTTCTCGCTTACTTTGCCCTCCAATGCCTTGCGCTCTTCCACAGCAAC
ACCCTTGACCTCTGGATATCGCGAGTGGTGCAGCTGTTGGCTGTAACGGT
CATTGGCGGCCTTTATTACGCGACCGTCTTCACGCCCGCCATGTTCGATC
ACCCTCCAATGCTCATGTCCTTCCACGGCCTCCTCGTATTTTACGGTATT
CCTGCCTTCATCTTCGGCATCATGCTCGTCATCGAAAAAGCGCAAGCCGA
GGAACTGCTGATGCTCGCCAACAAGAACAAGAATAAGAGCAAGGAGTACG
GCCAGAAAGAGGAGATGGAAATTCTTCTCACGTCCAACGAGGACAACAAG
ATGCTGTCCAAGAGCAAGAGAGATATTATTTCTCTCAACGATCCGATCTT
CGACAAGGAGGAGGACGAGGACGAACGCCTCACCTCCTCCGCCAGCCATT
CTGGAGTGTTCTCCCTCTTCTCCAAGGCCGTCAGCGCCGCCGGAAATATG
GCTTCGGTCACTGACGTGGAGTCAGGGGGGAAGGACGCATAATTGAATGA
GAAAGGCTGTGGGTAGGATGGGAGGAAGGGGGGTGATGAGGGTGTCAGAT
GGATATGGCAGGCTCGGCGAGTCGTTTAAGAATGATGGGTGTGAACAAGG
AAGGAAGGAAGGAAGGGAAGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGA
TAATAGTAGTGAAAGCCTCAACCCCCCAGCCTGGAGAAGACAAGCAGAAA
AAATTAGCACAAAGGGCGAGGAGGGGATGCGACGATGAAAGGAGGGAGGG
TGGTAAGAAGGGAAGGAAAAAGACATGTGAGGTGTTGGTAAAAGACTGAT
CCTCTCCTTGCTTGCTCCCTGATTCTTCCCTTCCTTCCCTCCTCCTCCCG
CTTCTTCGTCCTCTTCCTCCTTCTTGGGAATCTGAAGAGGAGGAGGAGGA
GGAGAAGGAGGAGGACGAGGAGGAGGAGGGAAAAATCAAGATGAGTCCCA
ATTTTATGCTTGACGTCATTCCTACTTTATTTCCACGATTGTTATTATCA
AGAGATGGAGGGAGAGGAAGGAGAATTAGAAGAAGAAGAAGAAGAAGTGA
CAGAAGAAGAAGAAGAATGAAAAAAAGAAGGAGAAGAAGAGGAAAAAAAT
GGAGAAATATGAAAGAGCAGCCAACCCTCTTCATTCATTTTATTACTTTA
CTCCTGCACTCGTCTATTTATTCCTTGTTTATCTATTTCCTCCTGTACTC
GTCTATTCATTCTCCCCACCCCTTAAATTTACTCATGTCCTCGTCTATTG
ATCTACGCATTCATTTATTGGTTGATTGATTGGTTGATTTATTGGCGTCT
CTAAAGCGCCTCGTCACTTCTCCGCTAAGTCGAGCTTAGTGTCAGCATAA
GCTTAGGAGTAAGCATAAGAATGAGTAGAGGTATAGGTGTAAGTATGACC
ATAAATGTTATGCAATACTTTATGAACTAATAATTTTACAGCCCATTCTC
CTTCATCCCTTCTTGTCACTCCTTTCTCAGGAAATCAGAGCGGAAGATGC
TTACTTCCCGCAATG

protein sequence of NO27G00270.3

>NO27G00270.3-protein ID=NO27G00270.3-protein|Name=NO27G00270.3|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MTSPTSTSTLCRRQRRRSILRPSSTFFFLLLAVFLLLLPVVVRAEGEAAP
APATDAAAVAPPAPAVDEAAKKAAEEEAAKKAADEEAAKKKAEEEAAAKK
VADEEEAKKKAEEEAKKKMEESAAAVVSTESASVMVAELEKALKADKEKL
IGELEALKKTMAEKEAKIKELEEAKTKAEGERDGKGREVEEKKALLDTSN
KELGEARTKITALMIVQEDLMKQKENLHMTYQELRDKYENPEFQHYVTKR
AEIFYNNNPGLQGAVNKTSELLMPHFEAGSNQYAIMFNNTHSTLKSNLAP
LLGDHHSHWISGFISYGLFLVPLFLSVHSLISIRAVFKLRGMIMFCHMYF
AVCSSVAALMAIYLREDPLRLFHESNAGTYVWTQLILGVVFLAYFALQCL
ALFHSNTLDLWISRVVQLLAVTVIGGLYYATVFTPAMFDHPPMLMSFHGL
LVFYGIPAFIFGIMLVIEKAQAEELLMLANKNKNKSKEYGQKEEMEILLT
SNEDNKMLSKSKRDIISLNDPIFDKEEDEDERLTSSASHSGVFSLFSKAV
SAAGNMASVTDVESGGKDA*

mRNA from alignment at chr27:92119..98520-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00270.3 ID=NO27G00270.3|Name=NO27G00270.3|organism=Nannochloropsis oceanica|type=mRNA|length=6402bp|location=Sequence derived from alignment at chr27:92119..98520- (Nannochloropsis oceanica)
CAAAATACAAGGCCCTGGTACAGGTGCCCCCCTTCTCTCTTCTCTCACCC
CACCGAGGCGTTCGAGTAATTGATTGATCAAAGTACATTCACTGTCTTCT
GCTATGTGTATCTCTGTGTGTGTCTTCAAGTGCTTTATCATCCATTTCAC
ACCCCTCGATTGATGGGCAGCAGCAGCACAAAACCGATGTCTCGAATCCA
CCGCTTGGCCCATCATCTCAATACTTTTGCCATGCCCCTTCCCTTTCCCT
GTAACCCACACATTTCGGTCCACCAACCTCTAGTCTCGAAGGCAGAGTAG
ACCAGGTAGAGGCACTTCCAAGAGCCCTATCCCTAAGGCGCGCGCTGCGA
CACTCCTTCACTTGTGTATCTGCCTGCGCCAGTGCCCTCTTGTCCCTTGT
CTGTTTCACGCCCTCTTCTCACGTCACAGACACGCTGGCACTCAAAATAC
AGGGACACTCACCCATTGAGTAGGACTCAATAATGACCTCTCCTACCAGC
ACCTCCACCTTGTGCCGACGGCAGCGCCGTCGCAGTATCCTGCGGCCGTC
GTCGACCTTCTTCTTTCTTCTCCTAGCTGGTAGGTAACACCCCCTTTTTG
ACTTCCACTCGTTTCCCCTTCCTCTCTCCACTGGTCACAGCATATTCACA
CACTCACATACAATCTGCGCTCCACAAACAGTGTTTCTCCTCCTCCTTCC
TGTGGTGGTGAGGGCCGAAGGGGAAGCTGCGCCTGCTCCTGCCACTGATG
CTGCTGCTGTCGCCCCTCCTGCTCCTGCGGTGGACGAAGCGGCGAAGAAA
GCCGCTGAGGTAAGACCAAAAGGGAGAGAGAGCGGGAGAGAGGAGTGCAA
GGAAGGGAGATAGGGTGGAAGGGTGACGAAAGTGAGCAGCTGAACCGGTT
CTGTAGCTGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
GGAGGAGAAAAAGCTACAACTCATTCGCTTCTGTGATTCTCTTTCTCACA
GGAGGAGGCAGCCAAGAAGGCAGCCGATGAGGAAGCAGCGAAAAAGAAGG
CCGAGGAGGTAAGTAGAAGACAGAAAGAGAGAGGGAGGAAGGGAGGGAAA
TAGGATGCAATAAAATGATAAAAATGATGCGACAGAACCGGCTATTCACC
TTTAGCAGCAGTAGCAGAAGGAGGAGGAGGGAAAGGAGGAGGAGAAAGAG
GAGGAGCAGCAGCAGAGCTTATAATTTACATATTTCATATTTCTACATTT
CTGTCTCCCACAGGAGGAGGCAGCCAAGAAGGCAGCCGATGAGGAAGCAG
CGAAAAAGAAGGCCGAGGAGGTAAGTAGAAGACAGAAAGAGAGAGGGAGG
AAGGGAGGGAAATAGGATGCAATAAAATGATAAAAATGATGCGACAGAAC
CGGCTATTCACCTTTAGCAGCAGTAGCAGAAGGAGGAGGAGGGAAAGGAG
GAGGAGAAAGAGGAGGAGCAGCAGCAGAGCTTATAATTTATATATTTCAT
ATTTCTACATTTCTGTCTCCCACAGGAGGAGGCAGCCAAGAAGGCAGCCG
ATGAGGAAGCAGCGAAAAAGAAGGCCGAGGAGGTAAGTAGAAGACAGAAA
GAGGGAGGGAGGAAGGGAGAAGGGAGGGAGGGTGAAATAAGTGTGTTTCC
ATTTCGCTATGATGAAAATTTAAGGATAACCAGGCGTAATAAATTACCAT
TATTGCACGTCTACCTCATCTTCTGACGTTTTCTCCCTGTGTCTGTTCCG
TTTTCTTTTAGGAGGCCGCGGCCAAGAAGGTGGCTGATGAGGAGGAAGCG
AAAAAGAAGGCTGAGGTAGGAAGGGGGAAGGGAAAAAGGAAGAGCACGAG
GGAGGGAAGGAGGGCGGGAAACAACGGCATTCCTTGACTCATTTGGACGA
CAGCTTTCGACTTTTGTTTCCAAAAGCGTATACCCACATCCTTCCTTCCT
CCCCCCCCTTCCCCTTCCTTCAGGAGGAGGCGAAGAAAAAGATGGAGGAG
TCCGCTGCCGCTGTCGTGAGCACGGAGTCGGCGTCTGTCATGGTTGCCGA
GCTCGAGAAGGCTTTGAAAGGTACGTCCTGTCCTTCCCTCCTTCCCTTCC
TCCCTCTCTCCCTCCCTCCCTCTCCCTCTTCCTCCTTGATCCGATCCTCC
CAATCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCT
CCCTCCCTCTCTCCCTCCCTCAGCCGACAAGGAGAAACTCATCGGTGAGC
TCGAGGCCCTCAAGAAGACGATGGCGGAAAAAGAGGCTAAGATTAAGGAG
CTTGAGGAAGCCAAGACCAAAGCCGAGGGAGGTACGTCCCTCTCTCTCTC
CCTCCCTTCCTTCTTCCCTTCCTCCCTCCCTCCCTCCCTTTCTGACACTC
TCCCACGTAGCACTCCTCACTCCCTCCCTCCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTACCTCAGAGCGCGACGGCAAAGGCCGTGAGGTGGAAGAG
AAGAAGGCGCTGCTTGATACCTCCAACAAAGAGCTCGGAGAAGCCAGGAC
AAAGATTACGGCGTTGATGATCGTGCAGGTAGGTAGGTAGGTAGGGAGGG
AGGGAGGGAGAGAGGGAGTGAGGAAGTGAGGAAGTGAGGGAGGGAGGGAG
GGAGAGAGGGAGTGAGGGAGGAAGGGAGGAAGGGAGAGATGAAAGGAAAG
TGAAGTAGAATCTAGAAGAAGACGTCATTTCCTGGCAAATATAGCATTTG
ACACACATTTTGAATTTTTCTACTTCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTCTGTGGTCCAGGAGGACCTGATGAAGCAGAAGGAGAACC
TTCACATGACCTACCAGGAGCTCCGCGACAAGTATGAGGTAGGTTTCCCC
CCTCCCTCCCTCCCTCCCTTCCTTCCTCACACCCAGCTAACCCGCCATCC
ACCTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGAACCCC
GAGTTCCAGCATTACGTGACCAAACGCGCCGAGATTTTCTACAACAACAA
CCCCGGCCTGCAGGGAGCCGTGAACAAGGTGCGTGCCCTCCCTCCCTCCC
TCCCTCCCTTGTTGCCTGCCGTACATTCCGTCCTTCCTTATTCCTTCAAG
AAAAAACAAGTCTCCTCGGATCCTTCCGCCATCTTCCTCACCCTCCCTCT
TTCTCCCTCCCTCCCTCCCTCCCTCTTCCTCCCCCTTCCTCAGACCAGCG
AGCTCCTCATGCCTCACTTCGAAGCCGGCTCCAACCAGTACGCCATTATG
TTCAACAACACCCACAGCACCCTCAAGGTATCACCCCCCCATCTATGTGC
CCTCCCTCCCTCCCTCCCTCCCTCCTTTCCCTCGTACTCGAGCACCGACC
CGTGTTAAGCTTATCATGACCATCTGCTTCCCCTCCCTCCCTCGCTCCCT
CAGTCTAATCTAGCCCCTCTTCTTGGAGACCATCATTCGCATTGGATCTC
CGGATTTATCTCCTACGGCCTCTTCCTCGTCCCTCTCTTTCTCTCTGTTC
ACTCCCTCATCTCCATCCGCGCCGTGTTCAAGCTCCGGTGAGCGACCGCC
CGTCCGCCCTCCCTCTCTTTCTCCCTCCCGCCCTCCCTCCTTCCCTCCCT
CCCGCCCTCCCTCCTTCCCTCCCTCTTCCTCGTGCTCCACCCACCAAGCG
CGTCCACCCTCTTCCTCACCCTCCCTCCCTCCCTCCCTCCTCAGAGGCAT
GATCATGTTCTGCCATATGTACTTCGCCGTCTGCTCGTCTGTGGCCGCCC
TCATGGCCATTTATTTGCGCGAAGACCCGCTGCGGTATGGAAGGGAGGGA
GGAAGGGAGGGAGGGAGGGAGGAGTGGTGGTGGTCTCCTTTAGTCACTCG
TCTTACCCGTGTCCTATCCCGTCCTTCCTCCCTTCCTTCCTCCCTCCCTC
CCTCCCTTTCCCTCAGGCTCTTCCACGAGTCCAACGCGGGCACGTACGTG
TGGACTCAGCTCATTCTCGGCGTGGTGTTTCTCGCTTACTTTGCCCTCCA
ATGCCTTGCGCTCTTCCACAGCAACACCCTTGACCTCTGGCACGTCCCTT
TCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTC
CCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTTCATGCCATTCTCTTTCGT
ACCTCTCCTCTCATCCCTCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTACCTCTCTACCTCCCCAGGATATCGCGAGTGGTGCAGCTGTTG
GCTGTAACGGTCATTGGCGGCCTTTATTACGCGACCGTCTTCACGCCCGG
TACGCCCTCCCTCCCTCCCTCCCTACCTACCTCCCTCCCTCCCTCCCTCC
TTCCCTCGGTGACTTGCATTTCCTTCCCATCCCCTCATCCCCTCATCCCT
CTTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCC
AGCCATGTTCGATCACCCTCCAATGCTCATGTCCTTCCACGGCCTCCTCG
TATTTTACGGTATTCCTGCCTTCATCTTCGGCATCATGCTCGTCATCGAA
AAAGCGCAAGCCGAGGAACTGCTGATGCTCGGTACGTCCCCACCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTGAAGCG
TGACCAAGCTGTCAGCGTTCTCCCTCTCAATCTTCATCTCACCCCCCTCC
CTCCCTCCCTCCCTCCCTGCAGCCAACAAGAACAAGAATAAGAGCAAGGA
GTACGGCCAGAAAGAGGAGATGGAAATTCTTCTCACGTCCAACGAGGACA
ACAAGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCCCTTTCAAATGCTGTCCAAGAGCAAGAAAGACGTCATCCCTCTCT
TCCTCTCCCTCCTTCCCTACCTCGCTCCCTCCCTCAGATGCTGTCCAAGA
GCAAGAGAGATATTATTTCTCTCAACGATCCGATCTTCGACAAGGAGGAG
GACGAGGACGAACGCCTCACCTCCTCCGCCAGCCATGTGAGTCCCTCCCT
CTCATCATCCCTCCCTTCCTCTTTTGTTTCTCGTCGTTCCTCCCCTCCCC
CTCTCTCTCCCACATCCCTCTCCCCTTCTCCTGGGCTCTGACGCCGTTCC
TCCCTCCCTCCTTCCCTCCCTCCCTCCCCATCACAGTCTGGAGTGTTCTC
CCTCTTCTCCAAGGCCGTCAGCGCCGCCGGAAATATGGCTTCGGTCACTG
ACGTGGAGTCAGGGGGGAAGGACGCATAATTGAATGAGAAAGGCTGTGGG
TAGGATGGGAGGAAGGGGGGTGATGAGGGTGTCAGATGGATATGGCAGGC
TCGGCGAGTCGTTTAAGAATGATGGGTGTGAACAAGGAAGGAAGGAAGGA
AGGGAAGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGATAATAGTAGTGAA
AGCCTCAACCCCCCAGCCTGGAGAAGACAAGCAGAAAAAATTAGCACAAA
GGGCGAGGAGGGGATGCGACGATGAAAGGAGGGAGGGTGGTAAGAAGGGA
AGGAAAAAGACATGTGAGGTGTTGGTAAAAGACTGATCCTCTCCTTGCTT
GCTCCCTGATTCTTCCCTTCCTTCCCTCCTCCTCCCGCTTCTTCGTCCTC
TTCCTCCTTCTTGGGAATCTGAAGAGGAGGAGGAGGAGGAGAAGGAGGAG
GACGAGGAGGAGGAGGGAAAAATCAAGATGAGTCCCAATTTTATGCTTGA
CGTCATTCCTACTTTATTTCCACGATTGTTATTATCAAGAGATGGAGGGA
GAGGAAGGAGAATTAGAAGAAGAAGAAGAAGAAGTGACAGAAGAAGAAGA
AGAATGAAAAAAAGAAGGAGAAGAAGAGGAAAAAAATGGAGAAATATGAA
AGAGCAGCCAACCCTCTTCATTCATTTTATTACTTTACTCCTGCACTCGT
CTATTTATTCCTTGTTTATCTATTTCCTCCTGTACTCGTCTATTCATTCT
CCCCACCCCTTAAATTTACTCATGTCCTCGTCTATTGATCTACGCATTCA
TTTATTGGTTGATTGATTGGTTGATTTATTGGCGTCTCTAAAGCGCCTCG
TCACTTCTCCGCTAAGTCGAGCTTAGTGTCAGCATAAGCTTAGGAGTAAG
CATAAGAATGAGTAGAGGTATAGGTGTAAGTATGACCATAAATGTTATGC
AATACTTTATGAACTAATAATTTTACAGCCCATTCTCCTTCATCCCTTCT
TGTCACTCCTTTCTCAGGAAATCAGAGCGGAAGATGCTTACTTCCCGCAA
TG

Coding sequence (CDS) from alignment at chr27:92119..98520-

>NO27G00270.3 ID=NO27G00270.3|Name=NO27G00270.3|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr27:92119..98520- (Nannochloropsis oceanica)
ATGACCTCTCCTACCAGCACCTCCACCTTGTGCCGACGGCAGCGCCGTCG
CAGTATCCTGCGGCCGTCGTCGACCTTCTTCTTTCTTCTCCTAGCTGTGT
TTCTCCTCCTCCTTCCTGTGGTGGTGAGGGCCGAAGGGGAAGCTGCGCCT
GCTCCTGCCACTGATGCTGCTGCTGTCGCCCCTCCTGCTCCTGCGGTGGA
CGAAGCGGCGAAGAAAGCCGCTGAGGAGGAGGCAGCCAAGAAGGCAGCCG
ATGAGGAAGCAGCGAAAAAGAAGGCCGAGGAGGAGGCCGCGGCCAAGAAG
GTGGCTGATGAGGAGGAAGCGAAAAAGAAGGCTGAGGAGGAGGCGAAGAA
AAAGATGGAGGAGTCCGCTGCCGCTGTCGTGAGCACGGAGTCGGCGTCTG
TCATGGTTGCCGAGCTCGAGAAGGCTTTGAAAGCCGACAAGGAGAAACTC
ATCGGTGAGCTCGAGGCCCTCAAGAAGACGATGGCGGAAAAAGAGGCTAA
GATTAAGGAGCTTGAGGAAGCCAAGACCAAAGCCGAGGGAGAGCGCGACG
GCAAAGGCCGTGAGGTGGAAGAGAAGAAGGCGCTGCTTGATACCTCCAAC
AAAGAGCTCGGAGAAGCCAGGACAAAGATTACGGCGTTGATGATCGTGCA
GGAGGACCTGATGAAGCAGAAGGAGAACCTTCACATGACCTACCAGGAGC
TCCGCGACAAGTATGAGAACCCCGAGTTCCAGCATTACGTGACCAAACGC
GCCGAGATTTTCTACAACAACAACCCCGGCCTGCAGGGAGCCGTGAACAA
GACCAGCGAGCTCCTCATGCCTCACTTCGAAGCCGGCTCCAACCAGTACG
CCATTATGTTCAACAACACCCACAGCACCCTCAAGTCTAATCTAGCCCCT
CTTCTTGGAGACCATCATTCGCATTGGATCTCCGGATTTATCTCCTACGG
CCTCTTCCTCGTCCCTCTCTTTCTCTCTGTTCACTCCCTCATCTCCATCC
GCGCCGTGTTCAAGCTCCGAGGCATGATCATGTTCTGCCATATGTACTTC
GCCGTCTGCTCGTCTGTGGCCGCCCTCATGGCCATTTATTTGCGCGAAGA
CCCGCTGCGGCTCTTCCACGAGTCCAACGCGGGCACGTACGTGTGGACTC
AGCTCATTCTCGGCGTGGTGTTTCTCGCTTACTTTGCCCTCCAATGCCTT
GCGCTCTTCCACAGCAACACCCTTGACCTCTGGATATCGCGAGTGGTGCA
GCTGTTGGCTGTAACGGTCATTGGCGGCCTTTATTACGCGACCGTCTTCA
CGCCCGCCATGTTCGATCACCCTCCAATGCTCATGTCCTTCCACGGCCTC
CTCGTATTTTACGGTATTCCTGCCTTCATCTTCGGCATCATGCTCGTCAT
CGAAAAAGCGCAAGCCGAGGAACTGCTGATGCTCGCCAACAAGAACAAGA
ATAAGAGCAAGGAGTACGGCCAGAAAGAGGAGATGGAAATTCTTCTCACG
TCCAACGAGGACAACAAGATGCTGTCCAAGAGCAAGAGAGATATTATTTC
TCTCAACGATCCGATCTTCGACAAGGAGGAGGACGAGGACGAACGCCTCA
CCTCCTCCGCCAGCCATTCTGGAGTGTTCTCCCTCTTCTCCAAGGCCGTC
AGCGCCGCCGGAAATATGGCTTCGGTCACTGACGTGGAGTCAGGGGGGAA
GGACGCATAA

Synonyms

Publications