NO26G01820.1, NO26G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01820.1
Unique NameNO26G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2772
Alignment locationchr26:623731..627548 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:623731..627548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G01820.1 vs.
Match: WP_063563719.1 (MULTISPECIES: beta-glucanase [Paenibacillus]; SDK47454.1 Glycosyl hydrolases family 16 [Paenibacillus sp. OK060]; SLJ88549.1 Glycosyl hydrolases family 16 [Paenibacillus sp. RU5A]; SOC62985.1 Glycosyl hydrolases family 16 [Paenibacillus sp. RU26A]; SOC68514.1 Glycosyl hydrolases family 16 [Paenibacillus sp. RU5M])

HSP 1 Score: 83.6 bits (205), Expect = 1.200e-12
Identity = 62/198 (31.31%), Postives = 106/198 (53.54%), Query Frame = 0 
Query:   97 TQDKWEKRDFWSVFYSNGDRNEIRDIGNNRMSITIAP----WKEAVSAQSST--AYSGGRLEFKIKSASVMPGIITAVYFASGNGRTGDSSLGNQDEIDLEFKGNEPTRVQTNVFMNGQ-ENLQMIDLGYDSSSDEHLYAVEWDNNAVRFKVDGREARSVPLTR---PLQHMQLHMSVWTTTGG---WPGLIQWGGYP 282
            T D W     + V +   ++  +  I   R+  T  P     K   SA+ ST   Y  GR+E ++K+AS + G++T+++  SG G TG S+    DEID+E  G + T+++TN F NG  ++  +I+LG+D+S D H YA EW  +++++ VDG+   +   +R   P     + +++W+ +G    W G   + G P
Sbjct:   51 TSDGWANGPDFGVGWKAVNQEFVNGIMALRLDNTGCPASCSGKNYASAEYSTHVKYGYGRVEARLKAASGV-GLVTSLFTYSGQG-TGTSN----DEIDIEILGKDTTKMETNYFTNGVGQHSTIINLGFDASLDFHNYAFEWSPSSIKWYVDGKLVHTETGSRGTLPTSPGYIMVNLWSGSGPAEIWTGKFNYPGMP 242
The following BLAST results are available for this feature:
BLAST of NO26G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_063563719.11.200e-1231.31MULTISPECIES: beta-glucanase [Paenibacillus]; SDK4... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01820NO26G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01820.1NO26G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01820.1.cds1NO26G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01820.1.cds2NO26G01820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01820.1.cds3NO26G01820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01820.1.cds4NO26G01820.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01820.1.cds5NO26G01820.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01820.1.cds6NO26G01820.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01820.1.cds7NO26G01820.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01820.1 ID=NO26G01820.1|Name=NO26G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2772bp
GTTTTCTTAAAAGGTACGTGGCGATCACTGACCTCCCGCCTCGCCGTAAG
ATCGTCGTGTTTGTGTTGTCACGATGCGTTCACAATCGACACGACGCTAC
ACCTGCATTTATACATATTTGAGCCGCTGGTCACGTTCTCCCTTTGGGGC
CGTGGCACGTCCTTTTTATCTGCCGGGCTGCAGTTTGTGTTGTGTCTGGC
TGGTTTGTTTCTATTTGTGCGTTGATGTGAGTGGCCTGTGTTTTATTTCT
TATGTCCTGCAAGGCCTTGAACACGCCCTCAATTGTCCTGTCCAAACACG
CGGTCTGTCTGTGCTTTGTGATGCACTGATCCGCTCAGAGCCTCACCCTT
GTGAGTGTAGGTCAATTTGCGCGGAGACATGCGCAGGCCTGGTGGTTGTA
AATGCTCCGCACTTTTTAGTTTCCTCTATAGCCGCCAATGGTGAGGGGGT
CGTAGCCACCAGTCCTTTGCCTTGTAGTCCGGCCTGGACATTTATGCCTC
ATACACCACCCACACACAAGCATCAACACACTCCACTCAAGCACTGACCC
GTCTCTGGACTCACCGCCTCCCCTCCCTTCCATCTCTACCACCCACACCT
ACCCCCACTCCAAGCCTCCGCCAACCAGACGCCACTACTAGCACTAGCAC
TAGCACAAGCACTAGCAGCGACTTTCGCACCAGTACCACTACATCAATCA
TGCGCTTCTCTATTACCACTGTCTCTGCTGCCGCCCTCCCCCTCCTCCTC
GCCCTTACCACCACTGCTGCCGACCCCCAACAAGTGGTGGTAGAGGGCAC
CTCCTCTTCGATACCCCCCTACGACGAGACCTCCACAGTCATCTCGACTC
CCCTGGTCCTCGCCCGTCAGAAAGTCGACCTTGACAACGCCCTCTCCCCT
CCCTCCTCTGCGGCCTCTTCCCCTTCTACGGGTCTGCGGGGAAACCCCAG
CAAGGACGCCACGGTGGCGGTGGAGGCCATGAGCGCCACCCAAGACAAAT
GGGAGAAGAGGGACTTCTGGAGCGTCTTCTACAGCAATGGCGATCGGAAT
GAGATTCGTGACATCGGCAACAACCGAATGTCCATCACCATTGCGCCCTG
GAAGGAGGCTGTCTCGGCGCAGAGCTCTACCGCGTACAGCGGTGGCCGCC
TCGAGTTCAAGATTAAGTCTGCCTCGGTCATGCCGGGTATCATCACAGCC
GTTTATTTCGCCTCCGGTAACGGTCGCACGGGTGACTCGTCGCTGGGGAA
TCAGGATGAGATTGATTTGGAATTCAAGGGTAACGAACCCACGCGCGTGC
AGACTAACGTCTTTATGAATGGGCAGGAGAACTTGCAGATGATTGATCTG
GGCTATGATTCGTCCTCAGACGAGCATCTGTACGCGGTGGAGTGGGACAA
CAATGCCGTGCGGTTCAAGGTGGATGGCAGGGAGGCGCGTTCCGTGCCCC
TGACGCGCCCTCTGCAGCACATGCAGCTGCACATGTCCGTCTGGACGACC
ACTGGCGGTTGGCCCGGGCTCATCCAGTGGGGGGGCTATCCTAACTGGGG
CTCTCGCGGGAACCAGCCGGTGGAGACAATTTTGGAGATCATCAAGTACC
CGGATCAGGCCTAAGCGAACCCAGGGAGGGCGAGATGGAGGGAGAGAGAG
ACGAAGGGAGGGAGATAGAGGTTGTCTTGAGGACATGAAGGGAGGGAGGA
AGGGAGAGAGGCACAAATATGTACACCGAAATGAGGCTGTCGATGATTCT
TTTGTCTGAGGGTCGTTGAGCCTGTTTTTGAACGTGTCTTTTTATTTTGC
CATTTTACCTAAGCAATCCATCGGGTTACAAAGGCGTGATTGTTTCATTT
ATATGTTGGTAAGCTATTCTTTACATGGGCTTGGGGCTAGCACGAAGGAG
AGCAATGACGTGTGCGTGAGGAAAACAAAAAAACACATCAACAAAAAGAG
AGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACCCACATCGACACC
CGTGCAAATAGACACATTTTTCAATGTGCGTGTTTTCGTCTTCACAAAAA
CGACCACGACAACAATAAAGGGGGAAAGGTGTGGGGGGGGGAGAAGCAAG
AGGGAGAAATTCGACAAGGATAAGGATAGGCATGCGCGCCTTTCATTTCT
CTTCCATCTTCGACTCCTTCTTCTTTTTGGTGAAAAGAGGAAGGGAGGGA
GGGTGGCAGGGAGGATAGTTTGGCCGCTAAATTTACATCCTTAGCGCAGG
CGTCGAACCCGTTGGGGTTCAGTGTAGGGTGAAAAGAAGGAGGAGAAGAG
GAAAGAGGGGAAATAAGGAACGAAGGCAGGCAGAGAGAGGAAGCAAGAGC
GAAAATAAATTGAAACTTTAAACTGTTCGTGGGAAGGGAGGAAGGGAAAG
CGGAAGGACCAGTGGAAGAGATAGGAATCACATGACTTCTCGTTTCTGAG
GGAGCGCAGGCTGGCTCCAGCAGCCAGAAGCAGCACCAGATATGAGTGAG
GAAGAGAGACAGGTCGAGAGGGAGGCAAGAGTAAGAGTATTTCTAGTGGT
ATTTTAATGTTGACATTAGACACACAAGGCACACGGCACCGGTAAATCAC
TGCGACGTAACACTCTAACCCTCGCGAGGAAAAGATGGGGGAAAGGTGGA
CAAGTAAAACAGAAAAATGAAAGAAGGAGGAAGAAACGAAGGAGGAGAAA
GGAGAGCCAGGAGAAGAAGAACAATCAAACCAAAATAAATCGCAAAAACA
AGCCACCGGATGCTCTTGATGG
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protein sequence of NO26G01820.1

>NO26G01820.1-protein ID=NO26G01820.1-protein|Name=NO26G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MRFSITTVSAAALPLLLALTTTAADPQQVVVEGTSSSIPPYDETSTVIST
PLVLARQKVDLDNALSPPSSAASSPSTGLRGNPSKDATVAVEAMSATQDK
WEKRDFWSVFYSNGDRNEIRDIGNNRMSITIAPWKEAVSAQSSTAYSGGR
LEFKIKSASVMPGIITAVYFASGNGRTGDSSLGNQDEIDLEFKGNEPTRV
QTNVFMNGQENLQMIDLGYDSSSDEHLYAVEWDNNAVRFKVDGREARSVP
LTRPLQHMQLHMSVWTTTGGWPGLIQWGGYPNWGSRGNQPVETILEIIKY
PDQA*
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mRNA from alignment at chr26:623731..627548+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01820.1 ID=NO26G01820.1|Name=NO26G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3818bp|location=Sequence derived from alignment at chr26:623731..627548+ (Nannochloropsis oceanica)
GTTTTCTTAAAAGGTACGTGGCGATCACTGACCTCCCGCCTCGCCGTAAG
ATCGTCGTGTTTGTGTTGTCACGATGCGTTCACAATCGACACGACGCTAC
ACCTGCATTTATACATATTTGAGCCGCTGGTCACGTTCTCCCTTTGGGGC
CGTGGCACGTCCTTTTTATCTGCCGGGCTGCAGTTTGTGTTGTGTCTGGC
TGGTTTGTTTCTATTTGTGCGTTGATGTGAGTGGCCTGTGTTTTATTTCT
TATGTCCTGCAAGGCCTTGAACACGCCCTCAATTGTCCTGTCCAAACACG
CGGTCTGTCTGTGCTTTGTGATGCACTGATCCGCTCAGAGCCTCACCCTT
GTGAGTGTAGGTCAATTTGCGCGGAGACATGCGCAGGCCTGGTGGTTGTA
AATGCTCCGCACTTTTTAGTTTCCTCTATAGCCGCCAATGGTGAGGGGGT
CGTAGCCACCAGTCCTTTGCCTTGTAGTCCGGCCTGGACATTTATGCCTC
ATACACCACCCACACACAAGCATCAACACACTCCACTCAAGCACTGACCC
GTCTCTGGACTCACCGCCTCCCCTCCCTTCCATCTCTACCACCCACACCT
ACCCCCACTCCAAGCCTCCGCCAACCAGACGCCACTACTAGCACTAGCAC
TAGCACAAGCACTAGCAGCGACTTTCGCACCAGTACCACTACATCAATCA
TGCGCTTCTCTATTACCACTGTCTCTGCTGCCGCCCTCCCCCTCCTCCTC
GCCCTTACCACCACTGCTGCCGACCCCCAACAAGTGGTGGTAGAGGGCAC
CTCCTCTTCGATACCCCCCTACGACGAGACCTCCACAGTCATCTCGACTC
CCCTGGTCCTCGCCCGTCAGAAAGTCGACCTTGACAACGCCCTCTCCCCT
CCCTCCTCTGCGGCCTCTTCCCCTTCTACGGGTCTGCGGGGAAACCCCAG
CAAGGACGCCACGGTGGCGGTGGAGGCCATGAGCGCCACCCAAGACAAAT
GGGAGAAGAGGGACTTCTGGAGCGTCTTCTACAGCAATGGCGATCGGAAT
GAGATTCGGTGAGTGTCAGGTTTGAGGAAGGGAGGGAGGGAAAGAGGGAG
GAGGGAGTAGAGGGGGGAGTGCCCGTATGTTCCACGGACATTTCCTGCAC
CACGCGACCTTCTCGTAACTTACCTTCCCTCCCGTCCTCCCTCCTCCCTT
AGTGACATCGGCAACAACCGAATGTCCATCACCATTGCGCCCTGGAAGGA
GGCTGTCTCGGCGCAGAGCTCTACCGCGTACAGCGGTGGCCGCCTCGAGT
TCAAGGTATGTCCCTCCTGTCCTCACTCCCTCCCTACCTTCCTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTATTTCCCTCCTGCTCTCCT
TTTGTCCCCTCCTGTTGCATCTGCCTCGTCACGTCCGTCATCTTTACCCC
GTCTGTGCGGAAGCGCGAAAGTCTCCCATATACTTCCCAAGACTCATCCC
TCCCCTCCTCCCTTTCTCCCTCTCTCCCTCCGCGAAGATTAAGTCTGCCT
CGGTCATGCCGGGTATCATCACAGCCGTTTATTTCGCCTCCGGTAACGGT
CGCACGGGTGACTCGTCGCTGGGGAATCAGGTAGGGAGGGAGGGAGGGAG
GGGGGGAGGGAGGGGTGACGGGCAAGGGTCCTGGAGTCTCTGACCATTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCC
CTCCCCGTAGGATGAGATTGATTTGGAATTCAAGGGTAACGAACCCACGC
GCGTGCAGACTAACGTCTTTATGAATGGGCAGGAGAACTTGCAGGTGAGG
GAGGGAGGGAGGGAAAGGGAGGGAGGGAGAGGTGGGTGATACTGCGATGT
GTGTGCTTGGTGATGCATGATGACGAGAATCTAGAGGGGAGGATGGGGGC
GAGGGAGGGGTGTGCGGCGCGTGGTGTGCGGCGCGTGGTGTGGAATGATG
ACTTATGACCTTCAGGGACCCGAGTCGCTTACTCTCCCTCCCTCCCTCCC
TCCCTCCCTCTCTCCATTGTCCTTCTAGATGATTGATCTGGGCTATGATT
CGTCCTCAGACGAGCATCTGTACGCGGTGGAGTGGGACAACAATGTAAGG
AGGGGGTGAGGGAGGAAGGGAGGGAGGGAGGGAATCGGCAGCCCAGGGCG
AGGTGGATCGATCAATGAGACGAGGCCCAGGACGACAGGCTTACTCACCC
ACCTTTCCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCT
CCCTCAGGCCGTGCGGTTCAAGGTGGATGGCAGGGAGGCGCGTTCCGTGC
CCCTGACGCGCCCTCTGCAGCACATGCAGCTGCACATGTCCGTCTGGACG
ACCACTGGCGGTTGGCCCGGGCTCATCCAGTGGGGGGGCTATCCTAGTAA
GTCCTTTCTCTCTCCCTCCTGCCCTCTCTCCCTCCCTCCCTCCTTTTTAC
ACTGTCTGCCTGCCATTCGTCCATCTTGTTCCTCCTCTTTTAGACATGTT
CTTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGACTGGGGCTCT
CGCGGGAACCAGCCGGTGGAGACAATTTTGGAGATCATCAAGTACCCGGA
TCAGGCCTAAGCGAACCCAGGGAGGGCGAGATGGAGGGAGAGAGAGACGA
AGGGAGGGAGATAGAGGTTGTCTTGAGGACATGAAGGGAGGGAGGAAGGG
AGAGAGGCACAAATATGTACACCGAAATGAGGCTGTCGATGATTCTTTTG
TCTGAGGGTCGTTGAGCCTGTTTTTGAACGTGTCTTTTTATTTTGCCATT
TTACCTAAGCAATCCATCGGGTTACAAAGGCGTGATTGTTTCATTTATAT
GTTGGTAAGCTATTCTTTACATGGGCTTGGGGCTAGCACGAAGGAGAGCA
ATGACGTGTGCGTGAGGAAAACAAAAAAACACATCAACAAAAAGAGAGAG
GAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACCCACATCGACACCCGTG
CAAATAGACACATTTTTCAATGTGCGTGTTTTCGTCTTCACAAAAACGAC
CACGACAACAATAAAGGGGGAAAGGTGTGGGGGGGGGAGAAGCAAGAGGG
AGAAATTCGACAAGGATAAGGATAGGCATGCGCGCCTTTCATTTCTCTTC
CATCTTCGACTCCTTCTTCTTTTTGGTGAAAAGAGGAAGGGAGGGAGGGT
GGCAGGGAGGATAGTTTGGCCGCTAAATTTACATCCTTAGCGCAGGCGTC
GAACCCGTTGGGGTTCAGTGTAGGGTGAAAAGAAGGAGGAGAAGAGGAAA
GAGGGGAAATAAGGAACGAAGGCAGGCAGAGAGAGGAAGCAAGAGCGAAA
ATAAATTGAAACTTTAAACTGTTCGTGGGAAGGGAGGAAGGGAAAGCGGA
AGGACCAGTGGAAGAGATAGGAATCACATGACTTCTCGTTTCTGAGGGAG
CGCAGGCTGGCTCCAGCAGCCAGAAGCAGCACCAGATATGAGTGAGGAAG
AGAGACAGGTCGAGAGGGAGGCAAGAGTAAGAGTATTTCTAGTGGTATTT
TAATGTTGACATTAGACACACAAGGCACACGGCACCGGTAAATCACTGCG
ACGTAACACTCTAACCCTCGCGAGGAAAAGATGGGGGAAAGGTGGACAAG
TAAAACAGAAAAATGAAAGAAGGAGGAAGAAACGAAGGAGGAGAAAGGAG
AGCCAGGAGAAGAAGAACAATCAAACCAAAATAAATCGCAAAAACAAGCC
ACCGGATGCTCTTGATGG
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Coding sequence (CDS) from alignment at chr26:623731..627548+

>NO26G01820.1 ID=NO26G01820.1|Name=NO26G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr26:623731..627548+ (Nannochloropsis oceanica)
ATGCGCTTCTCTATTACCACTGTCTCTGCTGCCGCCCTCCCCCTCCTCCT
CGCCCTTACCACCACTGCTGCCGACCCCCAACAAGTGGTGGTAGAGGGCA
CCTCCTCTTCGATACCCCCCTACGACGAGACCTCCACAGTCATCTCGACT
CCCCTGGTCCTCGCCCGTCAGAAAGTCGACCTTGACAACGCCCTCTCCCC
TCCCTCCTCTGCGGCCTCTTCCCCTTCTACGGGTCTGCGGGGAAACCCCA
GCAAGGACGCCACGGTGGCGGTGGAGGCCATGAGCGCCACCCAAGACAAA
TGGGAGAAGAGGGACTTCTGGAGCGTCTTCTACAGCAATGGCGATCGGAA
TGAGATTCGTGACATCGGCAACAACCGAATGTCCATCACCATTGCGCCCT
GGAAGGAGGCTGTCTCGGCGCAGAGCTCTACCGCGTACAGCGGTGGCCGC
CTCGAGTTCAAGATTAAGTCTGCCTCGGTCATGCCGGGTATCATCACAGC
CGTTTATTTCGCCTCCGGTAACGGTCGCACGGGTGACTCGTCGCTGGGGA
ATCAGGATGAGATTGATTTGGAATTCAAGGGTAACGAACCCACGCGCGTG
CAGACTAACGTCTTTATGAATGGGCAGGAGAACTTGCAGATGATTGATCT
GGGCTATGATTCGTCCTCAGACGAGCATCTGTACGCGGTGGAGTGGGACA
ACAATGCCGTGCGGTTCAAGGTGGATGGCAGGGAGGCGCGTTCCGTGCCC
CTGACGCGCCCTCTGCAGCACATGCAGCTGCACATGTCCGTCTGGACGAC
CACTGGCGGTTGGCCCGGGCTCATCCAGTGGGGGGGCTATCCTAACTGGG
GCTCTCGCGGGAACCAGCCGGTGGAGACAATTTTGGAGATCATCAAGTAC
CCGGATCAGGCCTAA
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Synonyms
Publications