NO26G00880.1, NO26G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00880.1
Unique NameNO26G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2130
Alignment locationchr26:292633..294989 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:292633..294989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00880.1 vs.
Match: XP_005854162.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]; EKU22195.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]; EWM23126.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 453.4 bits (1165), Expect = 5.900e-124
Identity = 227/315 (72.06%), Postives = 269/315 (85.40%), Query Frame = 0 
Query:    1 MKGALFIFALWGVLFALVPIVVDYATRKEFIVHSSGAIIVTGASTGIGNHAAIHLATQHPLTTIYAGIRKDKDAEAIAALNMPNLLPLKLDTTDQASMDAAVAQVLTTGIPVIGLVNNAGVSNNSPLEFLPMPKLRQLLETNVVGPTYLTQKLTPALRASQGRVVQISSVLGKVTLATRGAYSASKHAFEALSDVFRLELAN-FGVSVSIVEPAYVKTEIFGKVQQDIDGMKSAELLELYGPLYYRADQAKKKQKQIEGGDSPMVTSEAIEHAMFHRFPKTRYVVANFAGIPADVCLYLNWLMPDRLLDLVKSKM 315
            MKG +  FALWGV+FALVP  V++ TRK F VH++GAI+VTGASTGIGNHAAIHLAT +P  T+YAG+RKD DAE I AL++ NLLPL +DTTDQ+SMDAAVA + +T +P+IGL+NNAGVS NSP+EFLPM KLRQLLETNVVGPTYLTQ+L P+LRASQGRVVQISSVLGKVTLATRGAY ASKHAFEALSDV RLEL+  FGVSVS+VEPAYV+TEIFGK+QQ+I+ + S EL  LYGP +YR DQA +K+ QI  GDSP+VTS AIEHA+F  +PKTRYVVANFAG+ AD+CL++ W++PDRL D +K  M
Sbjct:    1 MKGGILAFALWGVIFALVPFAVEFLTRKSFPVHTTGAILVTGASTGIGNHAAIHLATHYPDVTVYAGVRKDVDAENIKALHLSNLLPLHIDTTDQSSMDAAVAFLHSTSLPIIGLINNAGVSTNSPIEFLPMAKLRQLLETNVVGPTYLTQQLIPSLRASQGRVVQISSVLGKVTLATRGAYCASKHAFEALSDVLRLELSGPFGVSVSVVEPAYVRTEIFGKIQQEIETLLSPELRSLYGPFFYREDQAARKKAQIAKGDSPVVTSTAIEHALFADYPKTRYVVANFAGVRADLCLFIAWMLPDRLADWLKGMM 315
The following BLAST results are available for this feature:
BLAST of NO26G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854162.15.900e-12472.06short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00880NO26G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00880.1NO26G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00880.1.cds1NO26G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00880.1.cds2NO26G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00880.1 ID=NO26G00880.1|Name=NO26G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2130bp
CGTGTGCACCGATTTTTCCCTTCCGTGTGCGAATAAACTTTAGTAATTAT
ACACTACCCATCCACTCTCGCATTACAGCACTGGCTACACACAAAGACAT
GCTCACGCTTAAGCGATTTTTTGTATCGAGAGCCTCTGTACTTGACTGTA
TCGGACAGTCGAGCGCTGTCGCCTGCAGCAGCAGCAAAAATCAGCACACG
ACTCTTCCTGAAGCTCACACGCGGACAGGGCGCATACAATATCCGCATAT
CCGCGTGCTACTGTTACTGTCACCGTCCCGCTGTCAGCCGAAGCTCCCAC
CCTCATTTATCCTCTCTTGCATCCATTATTCCACGCATATCGTCACATCA
GCAGGAACGCAAGAAGAATGAAAGGCGCTCTCTTCATCTTCGCCCTCTGG
GGCGTCCTCTTTGCCTTGGTACCGATTGTGGTGGATTATGCCACGCGGAA
AGAATTTATTGTGCACAGCTCAGGTGCAATTATTGTCACTGGGGCCTCAA
CTGGCATCGGGAACCACGCCGCCATCCACCTCGCCACCCAGCACCCCCTC
ACCACTATCTATGCCGGAATCCGCAAGGACAAAGACGCCGAAGCCATTGC
CGCCTTAAACATGCCCAACCTTCTCCCCCTCAAGCTTGACACGACAGACC
AAGCCTCCATGGACGCAGCCGTCGCCCAGGTCCTTACCACCGGGATCCCA
GTAATCGGCCTGGTCAACAATGCTGGCGTCAGCAACAACTCCCCCCTTGA
GTTTTTGCCCATGCCCAAACTACGACAACTGCTGGAAACCAACGTGGTAG
GGCCCACGTACCTTACGCAGAAGCTTACTCCTGCCCTCCGTGCATCCCAG
GGACGTGTCGTGCAGATTTCCTCCGTGCTGGGTAAAGTCACCTTGGCGAC
CCGTGGTGCTTACAGTGCTAGTAAACACGCCTTTGAAGCCTTGAGCGATG
TCTTTCGATTGGAGCTTGCTAATTTTGGAGTTTCTGTTTCAATTGTAGAG
CCCGCATACGTCAAGACGGAGATTTTTGGAAAGGTACAACAAGATATCGA
TGGGATGAAATCAGCCGAGCTGTTGGAGTTATACGGCCCCCTTTATTATC
GAGCAGACCAAGCGAAGAAGAAACAAAAACAGATCGAGGGGGGGGATAGC
CCGATGGTGACATCGGAGGCCATCGAGCATGCGATGTTCCACCGCTTCCC
CAAGACCCGATATGTGGTGGCAAATTTCGCAGGCATACCGGCGGACGTGT
GTTTGTATTTGAATTGGTTAATGCCCGATCGGCTGCTCGATTTGGTCAAA
AGCAAGATGTGAGTGGGAGAGCAGGAAGAGGGAGGGGAGCGAGAGGGAGA
AAGGAGGGGTAGAAGAAAGAAGCTTTAAAGTAATAGAAAATCCCACTTAT
CCACTTGCATCCTGTCGTAGACCCGGTTTCAAATCTCTCTTCCTTATAAT
CTCCGCAGACAGGCCTGTATCCTTATCCTCTTATATATACTCAGGAACCA
TGGAGAGAGGGAGGAAGCCCGATCAATTCGAACTACTTTCACCACAATGT
CCATTTATCTGTGTGCTATATATTCGCGTGTTACACTTGCTATGACCAAC
ACCACTCTGTCGCAATTGCTACTGCTGCTGCTGTGCTACTGCTGCTGCTG
CTACTGATCACATTTACATTTGCGCGCTGCGTCCTCTGGTTAATGACACA
TGGTCAAATTAGGCAAGCAATAACAGCAACAGTAGAAGGAGCAGCAGCCA
GCCGTCAATGAAGAAGAAACGGCGGATGAGAACGAATGCTATCACTCACC
TTCTTCTTACAGAGGTGTGGTGCGCACAGTCTTTACTTTACCGTAAGTCC
TTTCTTCCCATCTCTCTCTTCCTCCCCTTTAATTCTTCATGTCCTTACTC
TTTAGCTCTTGAGAAACTATGTTTACTCCAAAAGCATATCTCTATGGGTC
CTTGACATTCCTACTTTCTCATCCCCTGTCCTCCTCTCTCTCCTCCTTCC
CTTCCTTATATCCGCCCCAGACATCTCCCCTCTATGCAGTCACACGACTC
AAAATCGAGAAACGTAATTCCTAATCTTTAGATGAAAAACATTTCTTAAA
TCATTACCCCACCTCCCCACCCACTCCCCC
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protein sequence of NO26G00880.1

>NO26G00880.1-protein ID=NO26G00880.1-protein|Name=NO26G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MKGALFIFALWGVLFALVPIVVDYATRKEFIVHSSGAIIVTGASTGIGNH
AAIHLATQHPLTTIYAGIRKDKDAEAIAALNMPNLLPLKLDTTDQASMDA
AVAQVLTTGIPVIGLVNNAGVSNNSPLEFLPMPKLRQLLETNVVGPTYLT
QKLTPALRASQGRVVQISSVLGKVTLATRGAYSASKHAFEALSDVFRLEL
ANFGVSVSIVEPAYVKTEIFGKVQQDIDGMKSAELLELYGPLYYRADQAK
KKQKQIEGGDSPMVTSEAIEHAMFHRFPKTRYVVANFAGIPADVCLYLNW
LMPDRLLDLVKSKM*
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mRNA from alignment at chr26:292633..294989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00880.1 ID=NO26G00880.1|Name=NO26G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at chr26:292633..294989+ (Nannochloropsis oceanica)
CGTGTGCACCGATTTTTCCCTTCCGTGTGCGAATAAACTTTAGTAATTAT
ACACTACCCATCCACTCTCGCATTACAGCACTGGCTACACACAAAGACAT
GCTCACGCTTAAGCGATTTTTTGTATCGAGAGCCTCTGTACTTGACTGTA
TCGGACAGTCGAGCGCTGTCGCCTGCAGCAGCAGCAAAAATCAGCACACG
ACTCTTCCTGAAGCTCACACGCGGACAGGGCGCATACAATATCCGCATAT
CCGCGTGCTACTGTTACTGTCACCGTCCCGCTGTCAGCCGAAGCTCCCAC
CCTCATTTATCCTCTCTTGCATCCATTATTCCACGCATATCGTCACATCA
GCAGGAACGCAAGAAGAATGAAAGGCGCTCTCTTCATCTTCGCCCTCTGG
GGCGTCCTCTTTGCCTTGGTACCGATTGTGGTGGATTATGCCACGCGGAA
AGAATTTATTGTGCACAGCTCAGGTGCAATTATTGTCACTGGTACGTTTA
TAATAATGGGGCTGACATGGAGACGGAGAAAAGAGCGCGAGGCATTCTTG
ACAAGCCGTTCCATTCGCCCCTCCTTTGTCCTGGCTGCAACAAACCACTC
CCGCTTGCCTTTGTTAGAAGAAATAGGAAAGATGAACGGCGCGAATGCCC
TTGATAGTCTCCCTTACCCACATCTCACGCATCCCCTCTCCTCCTTCCTC
CCCCTTATTCCCCCCAAGGGGCCTCAACTGGCATCGGGAACCACGCCGCC
ATCCACCTCGCCACCCAGCACCCCCTCACCACTATCTATGCCGGAATCCG
CAAGGACAAAGACGCCGAAGCCATTGCCGCCTTAAACATGCCCAACCTTC
TCCCCCTCAAGCTTGACACGACAGACCAAGCCTCCATGGACGCAGCCGTC
GCCCAGGTCCTTACCACCGGGATCCCAGTAATCGGCCTGGTCAACAATGC
TGGCGTCAGCAACAACTCCCCCCTTGAGTTTTTGCCCATGCCCAAACTAC
GACAACTGCTGGAAACCAACGTGGTAGGGCCCACGTACCTTACGCAGAAG
CTTACTCCTGCCCTCCGTGCATCCCAGGGACGTGTCGTGCAGATTTCCTC
CGTGCTGGGTAAAGTCACCTTGGCGACCCGTGGTGCTTACAGTGCTAGTA
AACACGCCTTTGAAGCCTTGAGCGATGTCTTTCGATTGGAGCTTGCTAAT
TTTGGAGTTTCTGTTTCAATTGTAGAGCCCGCATACGTCAAGACGGAGAT
TTTTGGAAAGGTACAACAAGATATCGATGGGATGAAATCAGCCGAGCTGT
TGGAGTTATACGGCCCCCTTTATTATCGAGCAGACCAAGCGAAGAAGAAA
CAAAAACAGATCGAGGGGGGGGATAGCCCGATGGTGACATCGGAGGCCAT
CGAGCATGCGATGTTCCACCGCTTCCCCAAGACCCGATATGTGGTGGCAA
ATTTCGCAGGCATACCGGCGGACGTGTGTTTGTATTTGAATTGGTTAATG
CCCGATCGGCTGCTCGATTTGGTCAAAAGCAAGATGTGAGTGGGAGAGCA
GGAAGAGGGAGGGGAGCGAGAGGGAGAAAGGAGGGGTAGAAGAAAGAAGC
TTTAAAGTAATAGAAAATCCCACTTATCCACTTGCATCCTGTCGTAGACC
CGGTTTCAAATCTCTCTTCCTTATAATCTCCGCAGACAGGCCTGTATCCT
TATCCTCTTATATATACTCAGGAACCATGGAGAGAGGGAGGAAGCCCGAT
CAATTCGAACTACTTTCACCACAATGTCCATTTATCTGTGTGCTATATAT
TCGCGTGTTACACTTGCTATGACCAACACCACTCTGTCGCAATTGCTACT
GCTGCTGCTGTGCTACTGCTGCTGCTGCTACTGATCACATTTACATTTGC
GCGCTGCGTCCTCTGGTTAATGACACATGGTCAAATTAGGCAAGCAATAA
CAGCAACAGTAGAAGGAGCAGCAGCCAGCCGTCAATGAAGAAGAAACGGC
GGATGAGAACGAATGCTATCACTCACCTTCTTCTTACAGAGGTGTGGTGC
GCACAGTCTTTACTTTACCGTAAGTCCTTTCTTCCCATCTCTCTCTTCCT
CCCCTTTAATTCTTCATGTCCTTACTCTTTAGCTCTTGAGAAACTATGTT
TACTCCAAAAGCATATCTCTATGGGTCCTTGACATTCCTACTTTCTCATC
CCCTGTCCTCCTCTCTCTCCTCCTTCCCTTCCTTATATCCGCCCCAGACA
TCTCCCCTCTATGCAGTCACACGACTCAAAATCGAGAAACGTAATTCCTA
ATCTTTAGATGAAAAACATTTCTTAAATCATTACCCCACCTCCCCACCCA
CTCCCCC
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Coding sequence (CDS) from alignment at chr26:292633..294989+

>NO26G00880.1 ID=NO26G00880.1|Name=NO26G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr26:292633..294989+ (Nannochloropsis oceanica)
ATGAAAGGCGCTCTCTTCATCTTCGCCCTCTGGGGCGTCCTCTTTGCCTT
GGTACCGATTGTGGTGGATTATGCCACGCGGAAAGAATTTATTGTGCACA
GCTCAGGTGCAATTATTGTCACTGGGGCCTCAACTGGCATCGGGAACCAC
GCCGCCATCCACCTCGCCACCCAGCACCCCCTCACCACTATCTATGCCGG
AATCCGCAAGGACAAAGACGCCGAAGCCATTGCCGCCTTAAACATGCCCA
ACCTTCTCCCCCTCAAGCTTGACACGACAGACCAAGCCTCCATGGACGCA
GCCGTCGCCCAGGTCCTTACCACCGGGATCCCAGTAATCGGCCTGGTCAA
CAATGCTGGCGTCAGCAACAACTCCCCCCTTGAGTTTTTGCCCATGCCCA
AACTACGACAACTGCTGGAAACCAACGTGGTAGGGCCCACGTACCTTACG
CAGAAGCTTACTCCTGCCCTCCGTGCATCCCAGGGACGTGTCGTGCAGAT
TTCCTCCGTGCTGGGTAAAGTCACCTTGGCGACCCGTGGTGCTTACAGTG
CTAGTAAACACGCCTTTGAAGCCTTGAGCGATGTCTTTCGATTGGAGCTT
GCTAATTTTGGAGTTTCTGTTTCAATTGTAGAGCCCGCATACGTCAAGAC
GGAGATTTTTGGAAAGGTACAACAAGATATCGATGGGATGAAATCAGCCG
AGCTGTTGGAGTTATACGGCCCCCTTTATTATCGAGCAGACCAAGCGAAG
AAGAAACAAAAACAGATCGAGGGGGGGGATAGCCCGATGGTGACATCGGA
GGCCATCGAGCATGCGATGTTCCACCGCTTCCCCAAGACCCGATATGTGG
TGGCAAATTTCGCAGGCATACCGGCGGACGTGTGTTTGTATTTGAATTGG
TTAATGCCCGATCGGCTGCTCGATTTGGTCAAAAGCAAGATGTGA
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Synonyms
Publications