NO26G00830.1, NO26G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00830.1
Unique NameNO26G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3393
Alignment locationchr26:276123..279757 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:276123..279757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO26G00830.1 vs.
Match: ELT89386.1 (hypothetical protein CAPTEDRAFT_93388 [Capitella teleta])

HSP 1 Score: 75.5 bits (184), Expect = 3.300e-10
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 0 
Query:    2 PGAIAFIEQAKHYGSVLVHCNKGVSRSASFVLGYLMQTGGLSLPSSSSLLRSKRKICQPNDSFMEQLKKF 72
            P    FIE+    G VLVHCN GVSRSAS V+GYLMQ  G    S+  L++S+R   +PND FM+QLK +
Sbjct:  127 PECFEFIEEGMQQGRVLVHCNAGVSRSASIVIGYLMQREGKKFQSAYDLVKSQRPATRPNDGFMQQLKAY 196
The following BLAST results are available for this feature:
BLAST of NO26G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ELT89386.13.300e-1052.86hypothetical protein CAPTEDRAFT_93388 [Capitella t... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00830NO26G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00830.1NO26G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00830.1.cds1NO26G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00830.1.cds2NO26G00830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00830.1 ID=NO26G00830.1|Name=NO26G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=3393bp
CTCCCTCCCCCCCTCTCTCGGCTCTCACCCTATCCACCTTCCTCTGAACA
TGACTGGCGAAGTCCAGCTCCAAATGAATGCGTGCCCTTCCCGGTAAAAT
GGCTTTCCACAGCTCCCCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCTT
CTCCATCGTTCCCTCCCTCTCCCTCCAAAGCAGTGGAGTGAGGGAAGGAT
GAAGGGACGGCAGGGACGTACCGCTCTCCCTCCTCCTTCTCCAGCATATT
TCGCAGAAGCTCTAAGGTACGCCTGAACTCGTCCTGGTCCTCGACCACCA
CCCCTCCTTCCCTGCCTCCCAGCCTGCTGATGCCTTTCGCCACGCTCAGG
AGTCGCTGACATAGCCCCTGCTCCCTCCCTCCCTCTCTCCCTCCCTCCGT
AGCAGCACTTGTCGCCTTGGCGTACCTTCTCTGCGTGTCCGTCAAGCGGC
TTGTCCCTCGTGCCAGCCTAAGCGCATTCGCAGCACTAAGACCGGCCTCG
GCCGCGACCTCGATCGCTCCCTCCCTCCCGTCCTCCCTCGCCAGAGCCAA
CTCCAATACCTCCCTCCCTCCTTCCCTTCCTCCCTGCACCCTTCGATGCT
TGATTAATTCTTGCTTCGCCCTTGCCCAATCATCGTCTTCCCACCTCAGT
TGGGCACGATGCGCCGAGGTCTCTGCCGCTTCGCTTGCTTCGTCTAAAGC
ATTGGCGATAATCTGGGCATATTGGTGATCAAAGTAGCCGTCCAAATCCA
TGTCTACAGGTGATGACACCTCTGTACTCGCCGCAGTCGTCGGAGGAAGA
GCAGAGGAAATAGGTTGAAAGGCAGATTTTACCCCCAAGGAATAAGCTAA
TCGATTCATGCCCTCCACCTGTTCGCTTGGGAGGAACGCTCGTGCCTTGC
TTAGAACTTGATCACCCATCCCTCCACCCATTCCCCCTCCCCCCCCCCCC
CCACTCAACGCAGCTACATTTGCGGCCCGTTGTTGCAGAGAAAGAATGTC
TTGATTAAGCCCGGGAATCCCATCTTTGTTGATGGTCCGGGCACGCAAGG
CCTCAGCCTGCACGAGGGTTTCGTGGAGCTCGGGCATTGTGTATGCCTGT
ACCGTTTAAGAGAGGGATGAGAGTTTGATGGCTGAGAATATTGAGGATGC
TGGCAACCGGCGCGAGTTGGTTTCAGAGGATCTGGTAGAAATCAAGCATA
TCCCCACGCTTGCGCATGCGCATTGCCATGGCAGGTAGTGTGAGGATGGC
GTGGACGGACAAGTGTTCTTCGACGGGTGCGGTGGTTGTCGGCGAGCAGC
TTGGGCATGCGGTTTGGCACAGGATGCACCAAAGATACAGGCCGCGGCTG
TCGTTCGCAGCCTAACAGAGGGATGAGGACGGATTCTCTGTGTTTTGTCT
TGCAAGTGTGCATCTAGCCGAAGGGCTGGGATTATGGTGAGAATGCCAAA
GTCACTGGCAGCTTATGATGATGACCCTAACTTCGCTGACCGGTTGCACT
CGACAATTTCCTAAACCCAAAGAACCAAACGTGCGCGCAATACCCTCAAT
GTAAATATGCTCCGCCCCCCACACAAAAGCAATTGCAGCTGTGGTAGTCC
CAGCCCAAGTGAAGCGCGCTGTATCATGCCCAAAAGCAAGGGTCCCGATA
AGGTAAGCAGTAAGAAGGACCCCAACTTTTCCTTTCCCCTCCTTCCGATG
ACTCTCTTGCGAGTAGGAGGATCAGCAGTGCTTCTGTCACTCCCAGTCTA
TCATGGTCTATCATCCGCACGATAGACTTTTATCTTATCGTAGTCGTGTT
GCTCGACCTCAAATCTCATTCCTCTCCTCCTCACCTCTCCCGCTTCCTTC
CCTACTTCCCCTCCCCATACTCCGTGGTTTGGCGCACGCCCCTCCACCGT
CCGCTCTTTTTTATTGACGGGTGTAGGTGGTGGATTTTAAGACCTTTGGG
GATCGCCCCGCCCGTGGCCGGTCAACTGCTTTATACATTGGTTCCAAGGT
CGATGCGAGAAATGAGACCGGGCTGAGGGAGAGGGGGATCACTCACATTC
TCAATTGCACTCCACCACGCAGCCTGGACCCGGAAAGCGGCTGCCCAAAT
TTCTTTGAAAGTACAAGCAAAAGCCTCACGTACAAGCGAATCCCCATTTT
CGATAATCGAGGAGAGGATATTCTGTCGTACATGCCGGGGGCGATAGCTT
TCATTGAGCAGGCCAAGCATTATGGGAGCGTGCTTGTGCACTGCAACAAG
GGAGTCAGCCGCTCCGCTTCGTTCGTGCTGGGGTACTTGATGCAGACAGG
TGGTCTCTCCCTCCCTTCCTCGTCCTCCCTCCTTCGTTCTAAGAGAAAGA
TCTGTCAGCCCAATGATTCATTTATGGAACAATTGAAGAAATTCGATGAG
GAGGTGAAGGAGAGAAGGAGGGACGAGGAGGGGAGGCAGGCCAAGCACGG
GACAAGAGATACACAGAAAAAAGAAGGAGGAGAAGGAGGGGAAGAAGGAG
GACGTGTGATTAAAGCTCCGTTGGTTGGTAAAGCTCCGTTGGTTGGTCCT
GTGCGATGTCCGGGAGGAGGAGGAGGAGGAAAAAAAGGAGAAGGAGGAGG
AGAAGGAGGAAGGGAGGGAGGACGGATTGGCCCATCGATGCCTCGACATT
TGATACAGCAGCAGCAACAGCAGCAACAAGAAGTCATGGAAGGAGACACG
GAGGGAAACGAGGGGAGGGGGGTTAAAGGAGGGTCGTCGTTGAAAAGAAA
GCATGAGCATGCCATCGGTCCTTCCCGCACGCCTTCCTCTTCCTCCTTTT
CTAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAATCCT
TCCTCCATGGGCCCGAGTCTTCCTCTGACCCCTTTTCCTCCTGTTTTGGC
AGCTGCTGCCACTGCAGCCTCTCCTTCATCCTCCCCCCTCACCTTGCCAC
CGCCGCCACCACCACCATCGCCGCCGCCGCCGCAGCAGCAGCAGCAGTAC
AAGACTATCACAGGACCCTCTCCTCCAAGTATGTTGAATAACATGGAAGG
GACAGCTACAGAGGAAGAGCAGCAGGAGCAGCACAAGAAACCGAGTGAAA
AGCACCCAAACATAAACAATTAAATAAAGAAAAAGTACGCGTGTGTGTAT
AAATGTGCAACAATGATAATCATATCAAAGGTAAAATAAGTATAAATTCG
GGGTGGAGTAGAAAAACATGGAGGATTTCAATCCTAAATTCCCACCGTTA
CAATAATCTTCCCCTTCTTTCTTTTCTTAGTCATAATATTTATCCGACAA
GCCTTTCAATGGCCCGCTGCCTCTCCATGGCGCGCGCACACACACAGACA
CACACCCAGACACAGACACACACACACAGAGACACCCAGACAT
back to top

protein sequence of NO26G00830.1

>NO26G00830.1-protein ID=NO26G00830.1-protein|Name=NO26G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MPGAIAFIEQAKHYGSVLVHCNKGVSRSASFVLGYLMQTGGLSLPSSSSL
LRSKRKICQPNDSFMEQLKKFDEEVKERRRDEEGRQAKHGTRDTQKKEGG
EGGEEGGRVIKAPLVGKAPLVGPVRCPGGGGGGKKGEGGGEGGREGGRIG
PSMPRHLIQQQQQQQQEVMEGDTEGNEGRGVKGGSSLKRKHEHAIGPSRT
PSSSSFSNSSSSSSSSSSSSSNPSSMGPSLPLTPFPPVLAAAATAASPSS
SPLTLPPPPPPPSPPPPQQQQQYKTITGPSPPSMLNNMEGTATEEEQQEQ
HKKPSEKHPNINN*
back to top

mRNA from alignment at chr26:276123..279757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00830.1 ID=NO26G00830.1|Name=NO26G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=3635bp|location=Sequence derived from alignment at chr26:276123..279757+ (Nannochloropsis oceanica)
CTCCCTCCCCCCCTCTCTCGGCTCTCACCCTATCCACCTTCCTCTGAACA
TGACTGGCGAAGTCCAGCTCCAAATGAATGCGTGCCCTTCCCGGTAAAAT
GGCTTTCCACAGCTCCCCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCTT
CTCCATCGTTCCCTCCCTCTCCCTCCAAAGCAGTGGAGTGAGGGAAGGAT
GAAGGGACGGCAGGGACGTACCGCTCTCCCTCCTCCTTCTCCAGCATATT
TCGCAGAAGCTCTAAGGTACGCCTGAACTCGTCCTGGTCCTCGACCACCA
CCCCTCCTTCCCTGCCTCCCAGCCTGCTGATGCCTTTCGCCACGCTCAGG
AGTCGCTGACATAGCCCCTGCTCCCTCCCTCCCTCTCTCCCTCCCTCCGT
AGCAGCACTTGTCGCCTTGGCGTACCTTCTCTGCGTGTCCGTCAAGCGGC
TTGTCCCTCGTGCCAGCCTAAGCGCATTCGCAGCACTAAGACCGGCCTCG
GCCGCGACCTCGATCGCTCCCTCCCTCCCGTCCTCCCTCGCCAGAGCCAA
CTCCAATACCTCCCTCCCTCCTTCCCTTCCTCCCTGCACCCTTCGATGCT
TGATTAATTCTTGCTTCGCCCTTGCCCAATCATCGTCTTCCCACCTCAGT
TGGGCACGATGCGCCGAGGTCTCTGCCGCTTCGCTTGCTTCGTCTAAAGC
ATTGGCGATAATCTGGGCATATTGGTGATCAAAGTAGCCGTCCAAATCCA
TGTCTACAGGTGATGACACCTCTGTACTCGCCGCAGTCGTCGGAGGAAGA
GCAGAGGAAATAGGTTGAAAGGCAGATTTTACCCCCAAGGAATAAGCTAA
TCGATTCATGCCCTCCACCTGTTCGCTTGGGAGGAACGCTCGTGCCTTGC
TTAGAACTTGATCACCCATCCCTCCACCCATTCCCCCTCCCCCCCCCCCC
CCACTCAACGCAGCTACATTTGCGGCCCGTTGTTGCAGAGAAAGAATGTC
TTGATTAAGCCCGGGAATCCCATCTTTGTTGATGGTCCGGGCACGCAAGG
CCTCAGCCTGCACGAGGGTTTCGTGGAGCTCGGGCATTGTGTATGCCTGT
ACCGTTTAAGAGAGGGATGAGAGTTTGATGGCTGAGAATATTGAGGATGC
TGGCAACCGGCGCGAGTTGGTTTCAGAGGATCTGGTAGAAATCAAGCATA
TCCCCACGCTTGCGCATGCGCATTGCCATGGCAGGTAGTGTGAGGATGGC
GTGGACGGACAAGTGTTCTTCGACGGGTGCGGTGGTTGTCGGCGAGCAGC
TTGGGCATGCGGTTTGGCACAGGATGCACCAAAGATACAGGCCGCGGCTG
TCGTTCGCAGCCTAACAGAGGGATGAGGACGGATTCTCTGTGTTTTGTCT
TGCAAGTGTGCATCTAGCCGAAGGGCTGGGATTATGGTGAGAATGCCAAA
GTCACTGGCAGCTTATGATGATGACCCTAACTTCGCTGACCGGTTGCACT
CGACAATTTCCTAAACCCAAAGAACCAAACGTGCGCGCAATACCCTCAAT
GTAAATATGCTCCGCCCCCCACACAAAAGCAATTGCAGCTGTGGTAGTCC
CAGCCCAAGTGAAGCGCGCTGTATCATGCCCAAAAGCAAGGGTCCCGATA
AGGTAAGCAGTAAGAAGGACCCCAACTTTTCCTTTCCCCTCCTTCCGATG
ACTCTCTTGCGAGTAGGAGGATCAGCAGTGCTTCTGTCACTCCCAGTCTA
TCATGGTCTATCATCCGCACGATAGACTTTTATCTTATCGTAGTCGTGTT
GCTCGACCTCAAATCTCATTCCTCTCCTCCTCACCTCTCCCGCTTCCTTC
CCTACTTCCCCTCCCCATACTCCGTGGTTTGGCGCACGCCCCTCCACCGT
CCGCTCTTTTTTATTGACGGGTGTAGGTGGTGGATTTTAAGACCTTTGGG
GATCGCCCCGCCCGTGGCCGGTCAACTGCTTTATACATTGGTTCCAAGGT
CGATGCGAGAAATGAGACCGGGCTGAGGGAGAGGGGGATCACTCACATTC
TCAATTGCACTCCACCACGCAGGTACGACGAAAGGACAGGGAAGAAGGAT
TAAGGAGGGAGAATGGGGCAAATTATTGCATAAGGATTTCTCCATCGTGT
TTCTTGTCATGCTTCCTCATCCTCCCCCTTCCTGCCTTCTTTCCTCCCTC
CCTCAGCCTGGACCCGGAAAGCGGCTGCCCAAATTTCTTTGAAAGTACAA
GCAAAAGCCTCACGTACAAGCGAATCCCCATTTTCGATAATCGAGGAGAG
GATATTCTGTCGTACATGCCGGGGGCGATAGCTTTCATTGAGCAGGCCAA
GCATTATGGGAGCGTGCTTGTACGTTAAAAAATGATTTATTTATTGATTT
TTTTATTCGTTGTTTCCTCCCCTTTGGAATGTATATATATACCTCCCATC
CTGTCTTACCCACTTCCCGTCCTGTAGGTGCACTGCAACAAGGGAGTCAG
CCGCTCCGCTTCGTTCGTGCTGGGGTACTTGATGCAGACAGGTGGTCTCT
CCCTCCCTTCCTCGTCCTCCCTCCTTCGTTCTAAGAGAAAGATCTGTCAG
CCCAATGATTCATTTATGGAACAATTGAAGAAATTCGATGAGGAGGTGAA
GGAGAGAAGGAGGGACGAGGAGGGGAGGCAGGCCAAGCACGGGACAAGAG
ATACACAGAAAAAAGAAGGAGGAGAAGGAGGGGAAGAAGGAGGACGTGTG
ATTAAAGCTCCGTTGGTTGGTAAAGCTCCGTTGGTTGGTCCTGTGCGATG
TCCGGGAGGAGGAGGAGGAGGAAAAAAAGGAGAAGGAGGAGGAGAAGGAG
GAAGGGAGGGAGGACGGATTGGCCCATCGATGCCTCGACATTTGATACAG
CAGCAGCAACAGCAGCAACAAGAAGTCATGGAAGGAGACACGGAGGGAAA
CGAGGGGAGGGGGGTTAAAGGAGGGTCGTCGTTGAAAAGAAAGCATGAGC
ATGCCATCGGTCCTTCCCGCACGCCTTCCTCTTCCTCCTTTTCTAACTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAATCCTTCCTCCAT
GGGCCCGAGTCTTCCTCTGACCCCTTTTCCTCCTGTTTTGGCAGCTGCTG
CCACTGCAGCCTCTCCTTCATCCTCCCCCCTCACCTTGCCACCGCCGCCA
CCACCACCATCGCCGCCGCCGCCGCAGCAGCAGCAGCAGTACAAGACTAT
CACAGGACCCTCTCCTCCAAGTATGTTGAATAACATGGAAGGGACAGCTA
CAGAGGAAGAGCAGCAGGAGCAGCACAAGAAACCGAGTGAAAAGCACCCA
AACATAAACAATTAAATAAAGAAAAAGTACGCGTGTGTGTATAAATGTGC
AACAATGATAATCATATCAAAGGTAAAATAAGTATAAATTCGGGGTGGAG
TAGAAAAACATGGAGGATTTCAATCCTAAATTCCCACCGTTACAATAATC
TTCCCCTTCTTTCTTTTCTTAGTCATAATATTTATCCGACAAGCCTTTCA
ATGGCCCGCTGCCTCTCCATGGCGCGCGCACACACACAGACACACACCCA
GACACAGACACACACACACAGAGACACCCAGACAT
back to top

Coding sequence (CDS) from alignment at chr26:276123..279757+

>NO26G00830.1 ID=NO26G00830.1|Name=NO26G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr26:276123..279757+ (Nannochloropsis oceanica)
ATGCCGGGGGCGATAGCTTTCATTGAGCAGGCCAAGCATTATGGGAGCGT
GCTTGTGCACTGCAACAAGGGAGTCAGCCGCTCCGCTTCGTTCGTGCTGG
GGTACTTGATGCAGACAGGTGGTCTCTCCCTCCCTTCCTCGTCCTCCCTC
CTTCGTTCTAAGAGAAAGATCTGTCAGCCCAATGATTCATTTATGGAACA
ATTGAAGAAATTCGATGAGGAGGTGAAGGAGAGAAGGAGGGACGAGGAGG
GGAGGCAGGCCAAGCACGGGACAAGAGATACACAGAAAAAAGAAGGAGGA
GAAGGAGGGGAAGAAGGAGGACGTGTGATTAAAGCTCCGTTGGTTGGTAA
AGCTCCGTTGGTTGGTCCTGTGCGATGTCCGGGAGGAGGAGGAGGAGGAA
AAAAAGGAGAAGGAGGAGGAGAAGGAGGAAGGGAGGGAGGACGGATTGGC
CCATCGATGCCTCGACATTTGATACAGCAGCAGCAACAGCAGCAACAAGA
AGTCATGGAAGGAGACACGGAGGGAAACGAGGGGAGGGGGGTTAAAGGAG
GGTCGTCGTTGAAAAGAAAGCATGAGCATGCCATCGGTCCTTCCCGCACG
CCTTCCTCTTCCTCCTTTTCTAACTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCAATCCTTCCTCCATGGGCCCGAGTCTTCCTCTGACCC
CTTTTCCTCCTGTTTTGGCAGCTGCTGCCACTGCAGCCTCTCCTTCATCC
TCCCCCCTCACCTTGCCACCGCCGCCACCACCACCATCGCCGCCGCCGCC
GCAGCAGCAGCAGCAGTACAAGACTATCACAGGACCCTCTCCTCCAAGTA
TGTTGAATAACATGGAAGGGACAGCTACAGAGGAAGAGCAGCAGGAGCAG
CACAAGAAACCGAGTGAAAAGCACCCAAACATAAACAATTAA
back to top
Synonyms
Publications