NO26G00270.1, NO26G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00270.1
Unique NameNO26G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1363
Alignment locationchr26:93365..95267 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:93365..95267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00270.1 vs.
Match: XP_008872753.1 (hypothetical protein H310_08680 [Aphanomyces invadans]; ETV98556.1 hypothetical protein H310_08680 [Aphanomyces invadans])

HSP 1 Score: 203.8 bits (517), Expect = 3.200e-49
Identity = 96/119 (80.67%), Postives = 109/119 (91.60%), Query Frame = 0 
Query:    1 MSSFKAEHPLDKRKAEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLSVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTSAAMSAIYEERKDEDGFLYITYSGENTFGGELL 120
            M+SFK EHP +KR+AEA++I SKYPDRIPVICEKADRSEIPDIDKKKYLVPADL+VGQF YVIRKRI+L PEKAIFIF+NN +PPT++ MS IYEE+KD DGFLYITYSGENTFGG+ L
Sbjct:    1 MNSFKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSEIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTASLMSNIYEEQKDSDGFLYITYSGENTFGGDNL 119
The following BLAST results are available for this feature:
BLAST of NO26G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008872753.13.200e-4980.67hypothetical protein H310_08680 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00270NO26G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00270.1NO26G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00270.1.cds1NO26G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00270.1.cds2NO26G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00270.1.cds3NO26G00270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00270.1.cds4NO26G00270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00270.1 ID=NO26G00270.1|Name=NO26G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
ACCTTGGAGGCATTTCTTGCCTGTGTTTTTCCAGTGCATTAGACGGACAA
GAAGGGGGGAGGGAGAAGACGGAAGTGTTAATAAACTGATTTAATGGATG
GGTGAATTGTGGGAGAGAGGGAGAGAGAGACTGGCTGTACATAGAGGGGA
CGATGGCGTCGACGGCATGCAAAGGCCTGCTTATTGCTTGCTCACTTGCT
TCAATTTTCCACGCAGAGGCCCTCATCGTGCTTTTGGTTCACTTTGGGCG
TCCTCCCTCACTGTCAGGTTGACCCGACCACGCACACAACAAACACACGC
CCCTGCCCGGCGGTGGGAGACCAACAGCTCCTTCTCTTGCTTGATGTACA
TAGAGGTGCGTAAGCGCGGATGCACCTGAGGTGGAAACAGAGGCACAAAA
CAGCTTGTCAAGCGGAATCATAAGAACACAGCGCAAAAAGGATGATGCCT
TTCTTTTCATTCGTGCCCTGCAAGTGCTATCATATCAGCCGCCATGTCCC
TTCTTTCCCTCCTAGCAAGCAGACGCACGGCTACTTCTTTGTGTTTGTGC
CCAGTTGCGGGTCGCCTGGAAGAATACGAAGGGGAGGAGGAGTGCCAGGC
AGCCGCGGGTGATAGGGCCATAAGGCAGAAGAAAGATGCCGTGCATTGCG
TATGAATGCGACACAAATCAGCAAGCACGCCCACTCTTACACACATATAC
ACACTAAGACGCACCTCTCTCCCACACATATATGTACACACGCATGCACA
CAGTCGTCGTTTTCCTCTAGCGCGGCTTTTGTTGTCCTCGTAGTCGGCAG
AAACAGAAGCTGAAGGGGATCGATAACTGCAGCCATAGCATCAGCAGCAA
CAAAAAGGAGCAGTAATAGCCCACGGCACACCCAACCCGACCGTCTATCG
TTGCCTCGTCGTTAAGCTTACGACCAGGCAGACGACCGTAGACAATCAGG
AACAATACCGACCCCCAACAAGATGAGCTCCTTCAAGGCCGAGCACCCGC
TGGATAAGCGGAAGGCGGAGGCGGAGAAAATCCTTTCCAAGTACCCAGAT
CGCATCCCCGTCATTTGCGAGAAGGCGGACAGGAGTGAGATCCCCGATAT
TGACAAGAAGAAGTACCTGGTGCCGGCCGACCTCTCCGTCGGTCAGTTCA
CCTACGTCATTCGCAAGCGGATCCGTCTCCCGCCTGAGAAGGCCATCTTT
ATCTTCGTCAATAATTACATCCCTCCTACCTCGGCGGCCATGTCAGCCAT
CTACGAAGAGAGGAAAGATGAGGACGGCTTTCTTTATATCACCTATTCAG
GCGAGAACACGTTTGGGGGTGAGCTGTTGCCTGTGGAGTAGGGAGGGAGG
GAGGGAGGGAGGG
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protein sequence of NO26G00270.1

>NO26G00270.1-protein ID=NO26G00270.1-protein|Name=NO26G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MSSFKAEHPLDKRKAEAEKILSKYPDRIPVICEKADRSEIPDIDKKKYLV
PADLSVGQFTYVIRKRIRLPPEKAIFIFVNNYIPPTSAAMSAIYEERKDE
DGFLYITYSGENTFGGELLPVE*
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mRNA from alignment at chr26:93365..95267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00270.1 ID=NO26G00270.1|Name=NO26G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp|location=Sequence derived from alignment at chr26:93365..95267- (Nannochloropsis oceanica)
ACCTTGGAGGCATTTCTTGCCTGTGTTTTTCCAGTGCATTAGACGGACAA
GAAGGGGGGAGGGAGAAGACGGAAGTGTTAATAAACTGATTTAATGGATG
GGTGAATTGTGGGAGAGAGGGAGAGAGAGACTGGCTGTACATAGAGGGGA
CGATGGCGTCGACGGCATGCAAAGGCCTGCTTATTGCTTGCTCACTTGCT
TCAATTTTCCACGCAGAGGCCCTCATCGTGCTTTTGGTTCACTTTGGGCG
TCCTCCCTCACTGTCAGGTTGACCCGACCACGCACACAACAAACACACGC
CCCTGCCCGGCGGTGGGAGACCAACAGCTCCTTCTCTTGCTTGATGTACA
TAGAGGTGCGTAAGCGCGGATGCACCTGAGGTGGAAACAGAGGCACAAAA
CAGCTTGTCAAGCGGAATCATAAGAACACAGCGCAAAAAGGATGATGCCT
TTCTTTTCATTCGTGCCCTGCAAGTGCTATCATATCAGCCGCCATGTCCC
TTCTTTCCCTCCTAGCAAGCAGACGCACGGCTACTTCTTTGTGTTTGTGC
CCAGTTGCGGGTCGCCTGGAAGAATACGAAGGGGAGGAGGAGTGCCAGGC
AGCCGCGGGTGATAGGGCCATAAGGCAGAAGAAAGATGCCGTGCATTGCG
TATGAATGCGACACAAATCAGCAAGCACGCCCACTCTTACACACATATAC
ACACTAAGACGCACCTCTCTCCCACACATATATGTACACACGCATGCACA
CAGTCGTCGTTTTCCTCTAGCGCGGCTTTTGTTGTCCTCGTAGTCGGCAG
AAACAGAAGCTGAAGGGGATCGATAACTGCAGCCATAGCATCAGCAGCAA
CAAAAAGGAGCAGTAATAGCCCACGGCACACCCAACCCGACCGTCTATCG
TTGCCTCGTCGTTAAGCTTACGACCAGGCAGACGACCGTAGACAATCAGG
AACAATACCGACCCCCAACAAGATGAGCTCCTTCAAGGCCGAGCACCCGC
TGGGTAAGGAGGGAGGGAGGGAGGGGCCGGCGTTGTTTTGTGTGCATAAA
AACATGCGCTCGGATGTCGACGGTAGTGAGAATAGTGTAGCGGGATTGCC
GGGATGCTTGCGAGGAGGATTTCGAAAATGACTCCCGAAAACGTTCGAAA
ACCATATTTTTTCTTATGTTTTCTTCCCGCCCTCCCTCCCTTTCATCCCT
CCCCCTCTCCTTACAGATAAGCGGAAGGCGGAGGCGGAGAAAATCCTTTC
CAAGTACCCAGATCGCATCCCCGTCATTTGCGAGAAGGCGGACAGGAGTG
AGATCCCCGATATTGACAAGAAGAAGTAAGTAGAACAGTCCTCCTTCCCC
CCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGCCGATCCTCT
CTCCAACTAACGCCCCTCCCTTGCTCCCTCTCTCACTCCCTCCCTTTATC
TGAAAGGTACCTGGTGCCGGCCGACCTCTCCGTCGGTCAGTTCACCTACG
TCATTCGCAAGCGGATCCGTCTCCCGCCTGAGAAGGCCATCTTTATCTTC
GTCAATAATTACATCCCTCCTACCTGTAAGCAAGCCCTCCCTCCCTTCCT
CCCTCCACCTCTTTCCCTTCTCCTTCCTCCCTCCCTTTCTTTTCTTCCTT
CTTCCCTCACTCCGCGATTCTTGCGTATTAACGTTCCTTCCTTCCCTTAT
TAACGTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCC
TTCCTCCCTTCCTCCCTCCAGCGGCGGCCATGTCAGCCATCTACGAAGAG
AGGAAAGATGAGGACGGCTTTCTTTATATCACCTATTCAGGCGAGAACAC
GTTTGGGGGTGAGCTGTTGCCTGTGGAGTAGGGAGGGAGGGAGGGAGGGA
GGG
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Coding sequence (CDS) from alignment at chr26:93365..95267-

>NO26G00270.1 ID=NO26G00270.1|Name=NO26G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=369bp|location=Sequence derived from alignment at chr26:93365..95267- (Nannochloropsis oceanica)
ATGAGCTCCTTCAAGGCCGAGCACCCGCTGGATAAGCGGAAGGCGGAGGC
GGAGAAAATCCTTTCCAAGTACCCAGATCGCATCCCCGTCATTTGCGAGA
AGGCGGACAGGAGTGAGATCCCCGATATTGACAAGAAGAAGTACCTGGTG
CCGGCCGACCTCTCCGTCGGTCAGTTCACCTACGTCATTCGCAAGCGGAT
CCGTCTCCCGCCTGAGAAGGCCATCTTTATCTTCGTCAATAATTACATCC
CTCCTACCTCGGCGGCCATGTCAGCCATCTACGAAGAGAGGAAAGATGAG
GACGGCTTTCTTTATATCACCTATTCAGGCGAGAACACGTTTGGGGGTGA
GCTGTTGCCTGTGGAGTAG
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Synonyms
Publications