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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:682270..684733 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G02130.1 vs.
Match: EWM20020.1 (hypothetical protein Naga_102283g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 186.0 bits (471), Expect = 9.300e-44 Identity = 114/170 (67.06%), Postives = 129/170 (75.88%), Query Frame = 0
Query: 23 GKGRGLRGAFLSTLQTGTGTDSRGGSAKEYAVGLQIVGGVLGVASFTAVAVHRLDQ-----------GEIERVKGE---------------IKRVEGERAAELKLAAAEIKRVEGERRLSEERLRAEVDRYKYDLQLRFTQDFKPYQAAKEEANKERGGSRGRQKEEKTE 167
GKGRGLRGAFLST +TGTGT S G+A +VGLQIV GVLGVAS TA AVH LDQ E++RV+GE +KRVEGERAAE+KLAAAEIKRVEGERRLSEERLRAE++RYKYDLQLR TQD+KPYQAAKE+ANKERGG+ G QKEE+T+
Sbjct: 35 GKGRGLRGAFLSTHETGTGTGSGKGTAMVISVGLQIVVGVLGVASVTAAAVHHLDQRELAAAIKLAAAEMKRVEGERAAEMKRVEGERAAEMKRVEGERAAEIKLAAAEIKRVEGERRLSEERLRAELERYKYDLQLRHTQDYKPYQAAKEQANKERGGTGGPQKEEETD 204
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G02130.1 ID=NO25G02130.1|Name=NO25G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
CATCAGCCACGACCACCAGAGGGACAGCATGCTTAGCAGCCTGGCTACGA
AGGCAGGAGCCATGGCGAGGAGACGCGGCGCGCTTTTCGGCACAGGGAAG
GGACGCGGGCTGCGGGGGGCGTTCCTCTCGACACTTCAAACGGGGACGGG
GACAGACAGTAGGGGGGGGTCCGCGAAGGAGTACGCGGTAGGCCTCCAGA
TCGTTGGTGGGGTACTAGGGGTCGCTAGCTTTACCGCCGTGGCCGTCCAT
CGTCTCGACCAGGGGGAGATCGAGCGTGTAAAAGGGGAGATCAAGCGTGT
GGAGGGCGAGCGAGCGGCGGAGCTTAAATTGGCAGCGGCGGAGATCAAGC
GTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCGTCTGAGGGCGGAGGTG
GACCGATATAAATACGACCTACAACTTAGGTTCACCCAAGACTTCAAACC
GTATCAAGCCGCAAAGGAGGAGGCAAACAAAGAGAGAGGAGGATCAAGAG
GGCGGCAAAAGGAAGAGAAGACGGAGTAGTTTTTCAAACTTAAGAGTGTA
GCTGTACAAAAATATGTAAAAGACACACCAAAGACATGTACAGTGGCCGG
GGATATAAGGAAGAGGTGGGGACGGGACTGAACAAAAATGTCGAAAGGAG
GGCTCTTAAAATG back to topprotein sequence of NO25G02130.1 >NO25G02130.1-protein ID=NO25G02130.1-protein|Name=NO25G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MLSSLATKAGAMARRRGALFGTGKGRGLRGAFLSTLQTGTGTDSRGGSAK
EYAVGLQIVGGVLGVASFTAVAVHRLDQGEIERVKGEIKRVEGERAAELK
LAAAEIKRVEGERRLSEERLRAEVDRYKYDLQLRFTQDFKPYQAAKEEAN
KERGGSRGRQKEEKTE* back to topmRNA from alignment at chr25:682270..684733- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G02130.1 ID=NO25G02130.1|Name=NO25G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp|location=Sequence derived from alignment at chr25:682270..684733- (Nannochloropsis oceanica)
CATCAGCCACGACCACCAGAGGGACAGCATGCTTAGCAGCCTGGCTACGA
AGGCAGGAGCCATGGCGAGGAGACGCGGCGCGCTTTTCGGCACAGGTAAG
GTGGCTTGTGTAGATGCACCTTGGGGAGGAGGGTTTGTTGGTGGCCGTGG
GGAGGGACGTTCGGTGCACGCGACTGCCTCCTGCCCGCGGTATGTAGATC
CATTTTCGTCGGCCTACCTGCCCTGTATGCGTTTCAATCTTTGCTGTGTG
GACAAGAGGCCGCGCAAGGTGTTGACGCACAAGCACATCCATACACGCCA
ACAGGGAAGGGACGCGGGCTGCGGGGGGCGTTCCTCTCGACACTTCAAAC
GGGGACGGGGACAGACAGTAGGGGGGGGTCCGCGAAGGAGTACGCGGTAG
GACTCCAGATCGTTGGTGGGGTGCTAGGGGTCGCTAGCTTTACCGCCGTG
GCCGTCCATCGTCTCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCG
AGCGGTGGAGCTGAAATTGGCAGCGGCGGAGATCAAGCGTGTGGAGGGTG
AGCGAAGGTTGTCCGAGGAGCGTCTGAGGGCGGAGGTGGACCGATATAAA
TACGATCTACAACTTAGGTTCACCCAAGACTTCAAACCGTATCAAGCCGC
AAAGGAGGAGGCAAACAAAGAGAGAGGAGGATCAAGAGGGCGGCAAAAGG
AAGAGGAGACGGAGTAGTTTTTCAAACTTAAGAGTGTAGCTGTACAAAAA
TATGTAAAAGACACACCAAAGACATGTACAGTGGCCGGGGATATAAGGAA
GAGGTGGGGACGGGACTGAACAAAAATGTCGAAAGGAGGGCTCTTAAAAT
GTTTCGACCGTGGTGCGTTCCTTCTTTCTCTCTTTTGATTCTCTGGTCAT
TTCTTTAATCTCTGCCGCACTACTGCTGCCAGCTACTCATCCAACTTATC
AAGATCCGCCGCTTGTCATGAGGGGCTCGTGCAGACTTGGTGGGGACGAG
GGGAGGCCTAAAATGAGAGCAGGCAGGGAGTCAAGGAACGATAGCAAATA
CTTTGAAACCCGGAGGAAAGCCACCAGAGGGGCGTGCTTTAGATGACAAA
ATGTTGTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCA
GCAGCCAGCCTTGGCTGCTTGTCTCCCTTGCCCTCTTCTGTTGAGCGGCC
TTACAGTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCAT
CGCTCTCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGG
TGGATGTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTG
CACGGCAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAGGCA
GTGCGCACCCGCGCCGCCACCATTTTGTGGTGTAGCACGCATTTTGCGAA
GACGTCTATCTGGTACCCGAGCTGGTGTGGTTCGGAATAGCTTTGTTGTA
CGCTTGGAAACCGACCTCAAACACTCACTTGCCCTCCCTCCCTCCCACAC
ACAACAACCTGCACTGCTGCTTGCTTTGCTGCTCGCTGCCACCATCAGCC
ACGACCACCAGAGGGACAGCATGCTTAGCAGCCTGGCTACGAAGGCAGGA
GCCATGGCGAGGAGACGCGGCGCGCTTTTCGGCACAGGTAAGGTGGCTTG
TGTAGATGCACCTTGGGGAGGAGGGTTTGTTGGTGGCCGTGGGGAGGGAC
GTTCGGTGCACGCGACTGCCTCCTGCCCGCGGTATGTAGATCCATTTTCG
TCGGCCTACCTGCCCTGTATGCGTTTCAATCTTTGCTGTGTGGACAAGAG
GCCGCGCAAGGTGTTGACGCACAAGCACATCCATACACGCCAACAGGGAA
GGGACGCGGGCTGCGGGGGGCGTTCCTCTCGACACTTCAAACGGGGACGG
GGACAGACAGTAGGGGGGGGTCCGCGAAGGAGTACGCGGTAGGCCTCCAG
ATCGTTGGTGGGGTACTAGGGGTCGCTAGCTTTACCGCCGTGGCCGTCCA
TCGTCTCGACCAGGGGGAGATCGAGCGTGTAAAAGGGGAGATCAAGCGTG
TGGAGGGCGAGCGAGCGGCGGAGCTTAAATTGGCAGCGGCGGAGATCAAG
CGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCGTCTGAGGGCGGAGGT
GGACCGATATAAATACGACCTACAACTTAGGTTCACCCAAGACTTCAAAC
CGTATCAAGCCGCAAAGGAGGAGGCAAACAAAGAGAGAGGAGGATCAAGA
GGGCGGCAAAAGGAAGAGAAGACGGAGTAGTTTTTCAAACTTAAGAGTGT
AGCTGTACAAAAATATGTAAAAGACACACCAAAGACATGTACAGTGGCCG
GGGATATAAGGAAGAGGTGGGGACGGGACTGAACAAAAATGTCGAAAGGA
GGGCTCTTAAAATG back to topCoding sequence (CDS) from alignment at chr25:682270..684733- >NO25G02130.1 ID=NO25G02130.1|Name=NO25G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at chr25:682270..684733- (Nannochloropsis oceanica)
ATGCTTAGCAGCCTGGCTACGAAGGCAGGAGCCATGGCGAGGAGACGCGG
CGCGCTTTTCGGCACAGGGAAGGGACGCGGGCTGCGGGGGGCGTTCCTCT
CGACACTTCAAACGGGGACGGGGACAGACAGTAGGGGGGGGTCCGCGAAG
GAGTACGCGGTAGGCCTCCAGATCGTTGGTGGGGTACTAGGGGTCGCTAG
CTTTACCGCCGTGGCCGTCCATCGTCTCGACCAGGGGGAGATCGAGCGTG
TAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGCTTAAA
TTGGCAGCGGCGGAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGA
GGAGCGTCTGAGGGCGGAGGTGGACCGATATAAATACGACCTACAACTTA
GGTTCACCCAAGACTTCAAACCGTATCAAGCCGCAAAGGAGGAGGCAAAC
AAAGAGAGAGGAGGATCAAGAGGGCGGCAAAAGGAAGAGAAGACGGAGTA
G back to top
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