NO25G01920.1, NO25G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01920.1
Unique NameNO25G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2655
Alignment locationchr25:583687..586818 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:583687..586818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01920NO25G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01920.1NO25G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01920.1.cds1NO25G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01920.1.cds2NO25G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01920.1.cds3NO25G01920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01920.1.cds4NO25G01920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01920.1 ID=NO25G01920.1|Name=NO25G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2655bp
CGTCGGTGACTTTCTTTTCTTAGATTTGCATTCAGAGCTTCCTGGGAATG
GGGAGACAGGGAGATAAGAAGAAGTGAGGAGGATGGTCGAGCATCGAGCA
GTCGATCACCGCCAGACTTCCACACTTGTCTTCTTCTGTCGCCTCTTTTC
TTCCGTTGGTTGTCCTTTCTCTTCCTCCGCAGAGAAAAGTGTGTCCATAG
CCGAGAAGCCAACCTCCCCATGGGGGGAGGGTTGTTCATCCTTTCTCGCT
GTCGACGGACCTGGCCGGATATGGATCATGGCGGGCATCACATCGTCAAA
AGCACGTCCGTCACGCACAACCATTTCCCACACCCTCTTCTCACGCAATA
ACATGAGCAGCTAAGCAAGGATCGCAAGTAAACCCTGTCTTTGTGGGGCG
TCGCTGTATGTTTCATCGTGCTACAGCGACTGGAGCCTGATGCGTGCTGA
TGTCATCACAATCGGAACAAATATTTGACGTGTCTCCCCACCCTCCTTCT
GTTCTGGCCCCTGCCTCTGCACGCGCGCCCGCTGGCACCTTTTACCATGC
ACCACATACACAAACTCAAAGCCATTTCCATCACTTCTTGACACCTTTTC
CCTCCCTTGTCAGATCACCCCGCCTGGTCTTTAACAGCTCCCCCATCTCC
GGCGTATCTCAGATCCCAGCAGAGCCGAACATCGCGATAGGTCTGCACGA
GGCGACATGGCTACGACACTGTCCCCCCTCTACCTCCTCTTCCTGCTCCT
TTCCCTGGCTTCCACGATCCTCAGCACCATGGCCGATCAACAACAAGAGA
CAAGCGATTCCTCCTCCTCCTCTATTCGCTCCTCCATCCCCTCGTCGTAC
ACGCCGGCCCCAATCCTCCCTCCAGGCCACCTTCAAATGTTCGTCCTGGT
TAATAATGTGGACGTTCCCATCCAGGCCACCATAGTCTACAACTATACCG
ATCAAAAGTCCGACGCCCCCCAAGGCTTGGAGGGGCGCCATGAGCCCGTG
TCCTGGGCTGAGAATGTGTGGATGGGTGTGAAGGAAAGGCGAATGTTTGG
GCTGGGACAACAGAAGCAGGGCTTTTGGGAGGTAGTAAGCATGCACCTCG
AGCCACTCTATCCCCGCTTTGACCTCCCTCGCCCTCTTCCCGATTCGGAG
CCAGACGCCGCGACCGCCACTGCAAGTGGCGAAGGCACGGCTTTGTCTCC
ACTTGAGGAGGAAGGCGGAAAGAAGGGGAGGGAGGAGGAGGGGGGGAAGG
AAGAAGCAGGCAGGGAGAGAGGGAGGGAAGGGGACAAGGTGGCGGAGAGA
GCGTTGCCTGTGGTTTACTCCTGTCCGTTTTCGTTCTTGTTGAAGTCCGT
CGATCCATCCCGACTGGCCACGAATCCCGTTCTCCTCGGGGTTTTTGTAG
ATCGGCCAGGAGTGGAGGCACAGAGCGGGCGGGAGGGAGGGGGGGAGGGA
GGGGTCCTCATGGTTCCCGGGAATTCGCAGTCGAGGCGGGCGGTGCTGGT
GGTGCATGCCATGGACTCAAAAAAGGAGGAGATGGTGGAGGGGCGGGCTA
TCATTAGCGCGGCGGCCAGAGACCCCTCCCTCCAGCCCGCCCTGAGCCCT
ATCTCTGCTTCGACCACTATCACTACTTCTCCCAACGCTTCGTCTACTTC
CTCCTCCTCCACCACCACCTCTCCCCCTCCCCATATAATCGTCACCGATT
CTTCTTCTGCAGTGCCCTCCTCCTCCTCCTCTTCTGCATTCTCCTCCCCC
TCCACCCCCATCACTACCTCCGCACCCCAAAGCGGCAGCAACAACAGCAA
CAACAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACA
ACAACAGCAGCAACAACAGCAGCAGCAGTACCTCTCTTCCTCCCTCTCCT
CCCTCTCCCGGTGTCCAAGACCCCAAGGCCCGCCCTCAGGAGCCCGAGAG
CGAGTCCTCCCTCCCCCTCCCTCCCTCCAACGTTCGCCCTGACGTTCCAC
AAGGCGCTCCGAAAGCCCCCCAGGGGGGAACTCCAGTATCGACCATGACA
ACTCCCTTACCCCTCCCTCTGGTCCATCCGCCTAATCCGTTAAACAATGG
AGGAGGAGGAGGAGGAAGGGAGGGAGTGAACGCCGGGGCCATGGTGGGCC
CCAGAGTGGCTCCGCCGGTGACGGCAGAGCAAGGGGGGGTGGATGAGCGA
CGAAGGAGGGAGGGAGGGGATAGCGTGACGAGGCCGGAGAAGATGGTAAA
TGGTGCAGAGGGAGGGAAAGGGCAAGGGCGATTGCTGCGGGGGGAGCGAG
AGATATGATCTAAGAAGGAAGAGAGAGGGGAGGAGGACGATGGGAAGGAA
TGGGAACGAAGATGGGAGGATGTGTATATGCATGCTTGTTTGGAGCGAAG
GACAGCGAATGGGCGAATAAAGGAGTGAGTTGGCGAGTGAAGAGTGTGTT
GGAGGTCTCAGTGTGTGTATGTATGGGTGTGTGGGTGGGTGTGGGTGAAT
TAGGCTATGTGCAACAACAAGCAGTTGGGGTGCGTGAAATAGGAGAGGAC
AGCAGTGGTTTAAGGGAGGTGGTTAAAGGGGGGAAGATATAGAAACGGCC
ACACAGCCGTCGGCTTTTTTCATGTGCATGTTTTTCTGTTAATAAATTAG
TTCCA
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protein sequence of NO25G01920.1

>NO25G01920.1-protein ID=NO25G01920.1-protein|Name=NO25G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MATTLSPLYLLFLLLSLASTILSTMADQQQETSDSSSSSIRSSIPSSYTP
APILPPGHLQMFVLVNNVDVPIQATIVYNYTDQKSDAPQGLEGRHEPVSW
AENVWMGVKERRMFGLGQQKQGFWEVVSMHLEPLYPRFDLPRPLPDSEPD
AATATASGEGTALSPLEEEGGKKGREEEGGKEEAGRERGREGDKVAERAL
PVVYSCPFSFLLKSVDPSRLATNPVLLGVFVDRPGVEAQSGREGGGEGGV
LMVPGNSQSRRAVLVVHAMDSKKEEMVEGRAIISAAARDPSLQPALSPIS
ASTTITTSPNASSTSSSSTTTSPPPHIIVTDSSSAVPSSSSSSAFSSPST
PITTSAPQSGSNNSNNNSSSSSNNSSNSSSNNNSSNNSSSSTSLPPSPPS
PGVQDPKARPQEPESESSLPLPPSNVRPDVPQGAPKAPQGGTPVSTMTTP
LPLPLVHPPNPLNNGGGGGGREGVNAGAMVGPRVAPPVTAEQGGVDERRR
REGGDSVTRPEKMVNGAEGGKGQGRLLRGEREI*
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mRNA from alignment at chr25:583687..586818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01920.1 ID=NO25G01920.1|Name=NO25G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp|location=Sequence derived from alignment at chr25:583687..586818+ (Nannochloropsis oceanica)
CGTCGGTGACTTTCTTTTCTTAGATTTGCATTCAGAGCTTCCTGGGAATG
GGGAGACAGGGAGATAAGAAGAAGTGAGGAGGATGGTCGAGCATCGAGCA
GTCGATCACCGCCAGACTTCCACACTTGTCTTCTTCTGTCGCCTCTTTTC
TTCCGTTGGTTGTCCTTTCTCTTCCTCCGCAGAGAAAAGTGTGTCCATAG
CCGAGAAGCCAACCTCCCCATGGGGGGAGGGTTGTTCATCCTTTCTCGCT
GTCGACGGACCTGGCCGGATATGGATCATGGCGGGCATCACATCGTCAAA
AGCACGTCCGTCACGCACAACCATTTCCCACACCCTCTTCTCACGCAATA
ACATGAGCAGCTAAGCAAGGATCGCAAGTAAACCCTGTCTTTGTGGGGCG
TCGCTGTATGTTTCATCGTGCTACAGCGACTGGAGCCTGATGCGTGCTGA
TGTCATCACAATCGGAACAAATATTTGACGTGTCTCCCCACCCTCCTTCT
GTTCTGGCCCCTGCCTCTGCACGCGCGCCCGCTGGCACCTTTTACCATGC
ACCACATACACAAACTCAAAGCCATTTCCATCACTTCTTGACACCTTTTC
CCTCCCTTGTCAGATCACCCCGCCTGGTCTTTAACAGCTCCCCCATCTCC
GGCGTATCTCAGATCCCAGCAGAGCCGAACATCGCGATAGGTCTGCACGA
GGCGACATGGCTACGACACTGTCCCCCCTCTACCTCCTCTTCCTGCTCCT
TTCCCTGGCTTCCACGATCCTCAGCACCATGGCCGATCAACAACAAGAGA
CAAGCGATTCCTCCTCCTCCTCTATTCGCTCCTCCATCCCCTCGTCGTAC
ACGCCGGCCCCAATCCTCCCTCCAGGCCACCTTCAAATGTTCGTCCTGGT
TAATAATGTGGACGTTCCCATCCAGGCCACCATAGTCTACAACTATACCG
ATGTACGTTGATGCAAGGATGGGAATGGGAAATACAAATGGCCGGAATAC
CACCTCGTCTAACGCCTCCCACCTTTCTTCCCTCCTTTCCTCCTTCCTCT
CCTCCCAGCAAAAGTCCGACGCCCCCCAAGGCTTGGAGGGGCGCCATGAG
CCCGTGTCCTGGGCTGAGAATGTGTGGATGGGTGTGAAGGAAAGGCGAAT
GTTTGGGCTGGGACAACAGAAGTGAGTCTAAAATTAGGAGGAAGGGAGGG
AGGAAGGGGGAAGGGATGGCGCTCTCGATTTTTGATGAAAAACAGAAGCA
TCATGCCACCCAGGAGAAGTATCCTGCCACCCACGACCCCTTCATGGAGG
AATAAGCCTTCAAAGTCCTCACATCCCTTTTCATTCTCTCTCCCTTCCTC
CCTCCCATCGCCCCCTCCTCCAGGCAGGGCTTTTGGGAGGTAGTAAGCAT
GCACCTCGAGCCACTCTATCCCCGCTTTGACCTCCCTCGCCCTCTTCCCG
ATTCGGAGCCAGACGCCGCGACCGCCACTGCAAGTGGCGAAGGCACGGCT
TTGTCTCCACTTGAGGAGGAAGGCGGAAAGAAGGGGAGGGAGGAGGAGGG
GGGGAAGGAAGAAGCAGGCAGGGAGAGAGGGAGGGAAGGGGACAAGGTGG
CGGAGAGAGCGTTGCCTGTGGTTTACTCCTGTCCGTTTTCGTTCTTGTTG
AAGTCCGTCGATCCATCCCGACTGGCCACGAATCCCGTTCTCCTCGGGGT
TTTTGTAGATCGGCCAGGAGTGGAGGCACAGAGCGGGCGGGAGGGAGGGG
GGGAGGGAGGGGTCCTCATGGTTCCCGGGAATTCGCAGTCGAGGCGGGCG
GTGCTGGTGGTGCATGCCATGGACTCAAAAAAGGAGGAGATGGTGGAGGG
GCGGGCTATCATTAGCGCGGCGGCCAGGTGCGTGGAAGAAGGAGGGAAGG
AAGGAGGGAGGACGGAAGGCCAGGACGGTGGTCATCCTTCGCCTTATTCC
GGGTCACATGCAAAGTCTTAACTCATGGACTTATTCACTTTCTTTCTCTT
ACTCCGCTGCCTTCTCTCTCTTTCTTCTCGCCATCAAAAACCACAGAGAC
CCCTCCCTCCAGCCCGCCCTGAGCCCTATCTCTGCTTCGACCACTATCAC
TACTTCTCCCAACGCTTCGTCTACTTCCTCCTCCTCCACCACCACCTCTC
CCCCTCCCCATATAATCGTCACCGATTCTTCTTCTGCAGTGCCCTCCTCC
TCCTCCTCTTCTGCATTCTCCTCCCCCTCCACCCCCATCACTACCTCCGC
ACCCCAAAGCGGCAGCAACAACAGCAACAACAACAGCAGCAGCAGCAGCA
ACAACAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAACAACAGCAGC
AGCAGTACCTCTCTTCCTCCCTCTCCTCCCTCTCCCGGTGTCCAAGACCC
CAAGGCCCGCCCTCAGGAGCCCGAGAGCGAGTCCTCCCTCCCCCTCCCTC
CCTCCAACGTTCGCCCTGACGTTCCACAAGGCGCTCCGAAAGCCCCCCAG
GGGGGAACTCCAGTATCGACCATGACAACTCCCTTACCCCTCCCTCTGGT
CCATCCGCCTAATCCGTTAAACAATGGAGGAGGAGGAGGAGGAAGGGAGG
GAGTGAACGCCGGGGCCATGGTGGGCCCCAGAGTGGCTCCGCCGGTGACG
GCAGAGCAAGGGGGGGTGGATGAGCGACGAAGGAGGGAGGGAGGGGATAG
CGTGACGAGGCCGGAGAAGATGGTAAATGGTGCAGAGGGAGGGAAAGGGC
AAGGGCGATTGCTGCGGGGGGAGCGAGAGATATGATCTAAGAAGGAAGAG
AGAGGGGAGGAGGACGATGGGAAGGAATGGGAACGAAGATGGGAGGATGT
GTATATGCATGCTTGTTTGGAGCGAAGGACAGCGAATGGGCGAATAAAGG
AGTGAGTTGGCGAGTGAAGAGTGTGTTGGAGGTCTCAGTGTGTGTATGTA
TGGGTGTGTGGGTGGGTGTGGGTGAATTAGGCTATGTGCAACAACAAGCA
GTTGGGGTGCGTGAAATAGGAGAGGACAGCAGTGGTTTAAGGGAGGTGGT
TAAAGGGGGGAAGATATAGAAACGGCCACACAGCCGTCGGCTTTTTTCAT
GTGCATGTTTTTCTGTTAATAAATTAGTTCCA
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Coding sequence (CDS) from alignment at chr25:583687..586818+

>NO25G01920.1 ID=NO25G01920.1|Name=NO25G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at chr25:583687..586818+ (Nannochloropsis oceanica)
ATGGCTACGACACTGTCCCCCCTCTACCTCCTCTTCCTGCTCCTTTCCCT
GGCTTCCACGATCCTCAGCACCATGGCCGATCAACAACAAGAGACAAGCG
ATTCCTCCTCCTCCTCTATTCGCTCCTCCATCCCCTCGTCGTACACGCCG
GCCCCAATCCTCCCTCCAGGCCACCTTCAAATGTTCGTCCTGGTTAATAA
TGTGGACGTTCCCATCCAGGCCACCATAGTCTACAACTATACCGATCAAA
AGTCCGACGCCCCCCAAGGCTTGGAGGGGCGCCATGAGCCCGTGTCCTGG
GCTGAGAATGTGTGGATGGGTGTGAAGGAAAGGCGAATGTTTGGGCTGGG
ACAACAGAAGCAGGGCTTTTGGGAGGTAGTAAGCATGCACCTCGAGCCAC
TCTATCCCCGCTTTGACCTCCCTCGCCCTCTTCCCGATTCGGAGCCAGAC
GCCGCGACCGCCACTGCAAGTGGCGAAGGCACGGCTTTGTCTCCACTTGA
GGAGGAAGGCGGAAAGAAGGGGAGGGAGGAGGAGGGGGGGAAGGAAGAAG
CAGGCAGGGAGAGAGGGAGGGAAGGGGACAAGGTGGCGGAGAGAGCGTTG
CCTGTGGTTTACTCCTGTCCGTTTTCGTTCTTGTTGAAGTCCGTCGATCC
ATCCCGACTGGCCACGAATCCCGTTCTCCTCGGGGTTTTTGTAGATCGGC
CAGGAGTGGAGGCACAGAGCGGGCGGGAGGGAGGGGGGGAGGGAGGGGTC
CTCATGGTTCCCGGGAATTCGCAGTCGAGGCGGGCGGTGCTGGTGGTGCA
TGCCATGGACTCAAAAAAGGAGGAGATGGTGGAGGGGCGGGCTATCATTA
GCGCGGCGGCCAGAGACCCCTCCCTCCAGCCCGCCCTGAGCCCTATCTCT
GCTTCGACCACTATCACTACTTCTCCCAACGCTTCGTCTACTTCCTCCTC
CTCCACCACCACCTCTCCCCCTCCCCATATAATCGTCACCGATTCTTCTT
CTGCAGTGCCCTCCTCCTCCTCCTCTTCTGCATTCTCCTCCCCCTCCACC
CCCATCACTACCTCCGCACCCCAAAGCGGCAGCAACAACAGCAACAACAA
CAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACA
GCAGCAACAACAGCAGCAGCAGTACCTCTCTTCCTCCCTCTCCTCCCTCT
CCCGGTGTCCAAGACCCCAAGGCCCGCCCTCAGGAGCCCGAGAGCGAGTC
CTCCCTCCCCCTCCCTCCCTCCAACGTTCGCCCTGACGTTCCACAAGGCG
CTCCGAAAGCCCCCCAGGGGGGAACTCCAGTATCGACCATGACAACTCCC
TTACCCCTCCCTCTGGTCCATCCGCCTAATCCGTTAAACAATGGAGGAGG
AGGAGGAGGAAGGGAGGGAGTGAACGCCGGGGCCATGGTGGGCCCCAGAG
TGGCTCCGCCGGTGACGGCAGAGCAAGGGGGGGTGGATGAGCGACGAAGG
AGGGAGGGAGGGGATAGCGTGACGAGGCCGGAGAAGATGGTAAATGGTGC
AGAGGGAGGGAAAGGGCAAGGGCGATTGCTGCGGGGGGAGCGAGAGATAT
GA
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Synonyms
Publications