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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:555506..559513 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01860.2 vs.
Match: XP_005705724.1 (mitochondrial carrier (BOU / S-adenosylmethionine carrier) [Galdieria sulphuraria]; EME29204.1 mitochondrial carrier (BOU / S-adenosylmethionine carrier) [Galdieria sulphuraria]) HSP 1 Score: 205.7 bits (522), Expect = 3.100e-49 Identity = 111/286 (38.81%), Postives = 170/286 (59.44%), Query Frame = 0
Query: 176 VIQSKKDHLVAGAVARGLVVGSLHPVDTIKIRVQMFGKAGLQRL---------NVQALYAGITSSLLGQMPYGMLVYGSYEVYKDMIVEGLPRLGSDATSLVAAVLSDITGSIWLSPSEIVKQQMQSAAVGDKTTVFSAFANAWNAGGITAFYQGYGGLLLRDIPFRALQLPMYERVKVWLDDHLLTDATVARLPGSDRNAWREGLAGVISGSVSSAITTPFDVIKTRLQVDPT-----SYTGPWDCGVKVFQKEGIRGLYSGVVPRTLYIGPSTALFFVAYGAVR 448
V+ + HL++GAVARG+ V +++P+DTIK R+Q+ G+ + LY G+ S+L+GQ+PYGML +GSYE+YK + L R S ++AA++ D+TGS+WL PSE+VK ++Q+ G + A + G+ FYQGY G + RDIPFRA+QL YE ++ W +++ L + + G++SGSV++A+TTP DV+KTRL P +Y+ WDC ++ Q EG++ + G+ PR YIGPS A+FFV Y ++
Sbjct: 55 VLYRARIHLLSGAVARGVSVFAMYPIDTIKTRLQLETSRGVANYWHSLRKALSKPKYLYWGVVSTLIGQVPYGMLTFGSYEIYKSWLTGSL-RASSRLVIVLAAIMGDLTGSLWLCPSEVVKSRLQA---GQYSNTLDAIRKIFMTQGLKGFYQGYVGQIARDIPFRAIQLLSYEELR-WRYRQWKKLSSIEDLSNIENL-----VIGLVSGSVTAAVTTPLDVLKTRLMTQPIGVSTIAYSSAWDCARQLVQHEGLQAFWKGLGPRVFYIGPSGAIFFVVYEGMK 330
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01860.2 ID=NO25G01860.2|Name=NO25G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp TCAGACGCCTACGATTGAAGATGTGCTTCATGGGCCACAAGAAGCCTCCA ACGCTCATTCTTTTCTTCCTGCTGACCACCTCAAACTCAAGCCACATCGC CCGTCTTCTCTGACACTGGCATGTTGATTATTCCGACTTCCTTTGCTTGT ATTCACTGTGACCATCAATATGCGCCTTCCCACACAAGGCACTGTCAACG TCATCTCAACCATCATCATCGGCATCAAGAGCCAGCGGCATCAGGAGCCA GCGGCCTCTTCCTGAGCACTCAATGCGATGCCGTCAGGATCGCCGGTCAC GCCGCACTTATTCCACTCCCGAGTTTGCGATGCTCTTGTTCCAAGTCAAG TCTCCGTCCGTGTCGGAATGCTCTTGCATGGACACAAGGGTCTTGCGCAC TCCGAATTTTCATTTCATGACACGCACACGTACACAGGGAGACTGATTTT CTTGAGCGACATTAAACCGGCGCGTTTTACTCCGACGCAAAAGCTCCGTC GGTGCTTGTCCGTGTGTGCCGTCTACCACTTAAAGCTGCTTTTCCTCGCC AGCACAGAGTGCAGTGCGTCGTCAAGATGCATTCCTTAATCTTCCCGTCC TCCCCTCCTTCTGCCAGTGATGCCTCGGCATGGAGGAAAAGACGACGGCA GCAGCAGCAGCAGCAGCAGCAGCGGCAGCAATGGCATTCGGTCCTCTCCG CTTCCATCCTCCTCCTCGTCGTCTTCCTGGGCGGGACGTGCTTGGCCGCT ATACCCTCCGCCACGGCTGCCACAAGCACTGGTGGCACCGCTTGGGAATG GCCCTCAAGATTTGTCGTCCAAGCCTCTTCTGCTGTGGACCGCTCCTCCT CCTCCTCCTCCTCCTCCATGGTCACACCAAAACGGAAGTTTCTCTCCGCC CTCCCCAAGCAGAAACAGAGCAACAGTGCCAACAGCCCAACCCCTGCGAC TGCAGTCTCTCTAGCCACCCCTGCTGCTTCCCCATCCTCAGCAACAGCAG CAGCAGCAGTAGCAGCAGCAGCAGCAACAGCAGCAAATTGGCTGGCCCCA GTGGTGAAGGCGGTGGAAGGGGCAGGAAGTGCCCTGGGGACGTTTGGGCT GGTTATCCAGTCCAAGAAAGACCATCTGGTTGCCGGCGCGGTGGCCCGCG GCTTGGTGGTGGGGAGCTTGCATCCCGTGGACACGATCAAGATCCGAGTG CAAATGTTCGGGAAGGCGGGCCTGCAGCGTCTGAATGTCCAAGCACTATA CGCCGGCATCACCTCCTCCCTCTTGGGGCAAATGCCCTATGGGATGCTTG TGTATGGCTCGTATGAAGTCTACAAGGACATGATCGTGGAAGGACTACCA CGTCTGGGATCGGATGCCACCTCCCTTGTGGCTGCCGTTCTCTCCGACAT CACGGGCTCCATATGGCTTTCCCCCTCGGAAATCGTCAAGCAACAGATGC AGTCGGCGGCGGTGGGAGACAAAACGACCGTTTTCTCGGCCTTTGCCAAC GCCTGGAACGCGGGCGGAATCACGGCCTTCTACCAGGGTTATGGAGGCCT CCTCCTCAGGGACATTCCGTTCCGAGCTTTACAGCTCCCTATGTACGAGC GGGTCAAGGTCTGGTTGGACGACCACCTTCTCACCGATGCCACCGTCGCC CGCCTGCCCGGAAGCGACCGAAATGCGTGGAGGGAAGGGCTCGCTGGCGT TATCTCCGGCTCTGTCTCCAGCGCTATCACCACCCCCTTCGACGTGATCA AGACACGGCTGCAGGTTGATCCGACTTCCTACACTGGCCCCTGGGACTGC GGCGTCAAGGTCTTCCAGAAGGAAGGGATCAGGGGGCTCTACTCGGGCGT GGTGCCTCGCACCCTCTACATCGGGCCGTCGACAGCGCTCTTCTTTGTCG CATATGGCGCAGTGCGTTCGTACATGCATCGGGAGAGGTAGGGAGGGAGC GAAGGAGCGAGAGCAGGGAGACAGGGAAGGGAGGGAGGAAGGGAGGGAGG AAGGGAGGGAGGATTCGCTGACGCACCCCCTTTTCCCCTCTTTATCACAC AGCCAAAATCCTGCTAGCATCCTCCAGACTAGCAGCATCAAGAAGGAGAA CACCAAAAGCAGCAGCAGCAGGAGCAAGAGCAGCAGCAACGAGGCGCCCC ATGTGGCCCCTCGTGCCCCTCACTCCTTCTCTCTTCCCGAGCGGCCATTC CAAGGAGGGCTGCAGTTCCTCTCCCTCCCATCCTCGCTCCCTTTTTCCCT CCTCCAGAAACGTCCGCGGGAGGATCGGTTGGAGAATCATCAGCACCTGC AGCAGCTGTTGAAAAAAAAGAAGGAGCACAAGTGATATGAAGGAGCACAA GTAATAAGAAGACGGAGGAAGGGAATGAAGGCTTGTAAGATAGAGACAGG GCAGTCGGCGACGAGCATTGACAACGAGCTCCTGGAGTACAAAGTTTTAA GAGATGAGCGAGGGGTGCCGCAGAGATCAAAAGCACGGCGAGTACCGGAG AGGCAGAGACATGGGCGATAGGGGTAAGCGAGAGGAAGGACGGGAGGTGT CGTCGTCGCTCTCGCGCCAATTTCCTGTCCGGTTTCCTCAGGCACGCGGG ATGGTGGGTGACGGGAGGGTCGGATGATGTTGAGGACGACTTCGAAAGCA ACCAGAGGCCGACATGTGACCAGGGCAAGAGCCGACAGGCACAGGGAGGC ACGATATGAATCTTTATATTATTTTTTGTAAGGAAAACACATAAAGAAGA AACAAATAGAGGGGAAGTTTTTAATAAAAGAAGACCATGAATGAGAAACC GAAA back to topprotein sequence of NO25G01860.2 >NO25G01860.2-protein ID=NO25G01860.2-protein|Name=NO25G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp MHSLIFPSSPPSASDASAWRKRRRQQQQQQQQRQQWHSVLSASILLLVVF LGGTCLAAIPSATAATSTGGTAWEWPSRFVVQASSAVDRSSSSSSSSMVT PKRKFLSALPKQKQSNSANSPTPATAVSLATPAASPSSATAAAAVAAAAA TAANWLAPVVKAVEGAGSALGTFGLVIQSKKDHLVAGAVARGLVVGSLHP VDTIKIRVQMFGKAGLQRLNVQALYAGITSSLLGQMPYGMLVYGSYEVYK DMIVEGLPRLGSDATSLVAAVLSDITGSIWLSPSEIVKQQMQSAAVGDKT TVFSAFANAWNAGGITAFYQGYGGLLLRDIPFRALQLPMYERVKVWLDDH LLTDATVARLPGSDRNAWREGLAGVISGSVSSAITTPFDVIKTRLQVDPT SYTGPWDCGVKVFQKEGIRGLYSGVVPRTLYIGPSTALFFVAYGAVRSYM HRER* back to topmRNA from alignment at chr25:555506..559513+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01860.2 ID=NO25G01860.2|Name=NO25G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=4008bp|location=Sequence derived from alignment at chr25:555506..559513+ (Nannochloropsis oceanica) TCAGACGCCTACGATTGAAGATGTGCTTCATGGGCCACAAGAAGCCTCCA
ACGCTCATTCTTTTCTTCCTGCTGACCACCTCAAACTCAAGCCACATCGC
CCGTCTTCTCTGACACTGGCATGTTGATTATTCCGACTTCCTTTGCTTGT
ATTCACTGTGACCATCAATATGCGCCTTCCCACACAAGGCACTGTCAACG
TCATCTCAACCATCATCATCGGCATCAAGAGCCAGCGGCATCAGGAGCCA
GCGGCCTCTTCCTGAGCACTCAATGCGATGCCGTCAGGATCGCCGGTCAC
GCCGCACTTATTCCACTCCCGAGTTTGCGATGCTCTTGTTCCAAGTCAAG
TCTCCGTCCGTGTCGGAATGCTCTTGCATGGACACAAGGGTCTTGCGCAC
TCCGAATTTTCATTTCATGACACGCACACGTACACAGGGAGACTGATTTT
CTTGAGCGACATTAAACCGGCGCGTTTTACTCCGACGCAAAAGCTCCGTC
GGTGCTTGTCCGTGTGTGCCGTCTACCACTTAAAGCTGCTTTTCCTCGCC
AGCACAGAGTGCAGTGCGTCGTCAAGATGCATTCCTTAATCTTCCCGTCC
TCCCCTCCTTCTGCCAGTGATGCCTCGGCATGGAGGAAAAGACGACGGCA
GCAGCAGCAGCAGCAGCAGCAGCGGCAGCAATGGCATTCGGTCCTCTCCG
CTTCCATCCTCCTCCTCGTCGTCTTCCTGGGCGGGACGTGCTTGGCCGCT
ATACCCTCCGCCACGGCTGCCACAAGCACTGGTGGCACCGCTTGGGAATG
GTACGTAAGAATGGGTTCCGAGAAGGAGAGAGGGAAGGAGGGAAGGGGGG
GAGGGGGGGCCGAAAACTTGCCCATTGCTGACTTCCCGCCCTATTAAACC
CCGTCATGCTTACATACATGTATATATTATATTCTCTATGCATGTTCAGG
CCCTCAAGATTTGTCGTCCAAGCCTCTTCTGCTGTGGACCGCTCCTCCTC
CTCCTCCTCCTCCTCCATGGTCACACCAAAACGGAAGTTTCTCTCCGCCC
TCCCCAAGCAGAAACAGAGCAACAGTGCCAACAGCCCAACCCCTGCGACT
GCAGTCTCTCTAGCCACCCCTGCTGCTTCCCCATCCTCAGCAACAGCAGC
AGCAGCAGTAGCAGCAGCAGCAGCAACAGCAGCAAATTGGCTGGCCCCAG
TGGTGAAGGCGGTGGAAGGGGCAGGAAGTGCCCTGGGGACGTTTGGGCTG
GTTATCCAGTCCAAGAAAGACCATCTGGTTGCCGGCGCGGTAAGCAAGGA
GAGAGGCAGTGGAAATTCAGGGAAGGAGTGAAGGAGGGAGGAAAGGAAAG
AGGGAAGGAGGAAGGCTGGCAACATAGTGACAAACTCAGGCATGTGAGAA
GGCAAAACTCACTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAG
GTGGCCCGCGGCTTGGTGGTGGGGAGCTTGCATCCCGTGGACACGATCAA
GATCCGAGTGCAAATGTTCGGGAAGGCGGGCCTGCAGGTGGGAGGGAGGG
GGGGAGGGACGGACGGACGGACGGACGGACGGGAGAAGGGAGAGAGGAAG
GGTAGGGGGCGCCACATTCAACGTCTTCACCACCCTAAACCAAGACACGC
AGTGCCTGACAATCCTCCCTCCCTCCCTCCCTCCTCTCCTCCCTCCTTAG
CGTCTGAATGTCCAAGCACTATACGCCGGCATCACCTCCTCCCTCTTGGG
GCAAATGCCCTATGGGATGCTTGTGTATGGCTCGTATGAAGTCTACAAGG
ACATGATCGTGGAAGGGTGAGGAGGGAGGGAGAGAGGGAAGGAAGGAGAC
AGGGAAGGAGGGAGAAAGCCCACACCCACCCACACACACACACACACACA
CACACACACCCACACCCACCCACACACCAACACACCCACACACACACACA
CCTCTACAGACTACCACGTCTGGGATCGGATGCCACCTCCCTTGTGGCTG
CCGTTCTCTCCGACATCACGGGCTCCATATGGCTTTCCCCCTCGGAAAGT
GAGTCCCTCCCTCTCTCTCTTCCTCCTTCCCTCCCTCCCTCCTTCTCTCC
CCTCCCATCCCCCCTTCCTGCCATATAACCTGTCGATACTCATCCCTCCC
TTCTTCCCCCTCTCCCTCCAGTCGTCAAGCAACAGATGCAGTCGGCGGCG
GTGGGAGACAAAACGACCGTTTTCTCGGCCTTTGCCAACGCCTGGAACGC
GGGCGGAATCACGGCCTTCTACCAGGGTTATGGAGGTGAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAGAAAAGATGGG
ACACAGTCACATAAATTGCCCGCGGAAAACCCACTCAAACCGCGCTTTCC
CCCCCACTCCCTCCCTTCCTCCCCCTCCCTCCCTCCTTTCCACTCCCCCA
GGCCTCCTCCTCAGGGACATTCCGTTCCGAGCTTTACAGCTCCCTATGTA
CGAGCGGGTCAAGGTCTGGTTGGACGACCACCTTCTCACCGATGCCACCG
TCGCCCGCCTGCCCGGAAGCGACCGAAATGCGTGGAGGGTACGAAAAACA
CTCCCTCTCTTCTCACCCATCCCTCCCTCTCTGCCTCCCTCTCTGCCTCT
ATGCCCACCGTCTCCGTCTTCGTCCTCATCCTCCTCTCTGCGTTCTGCCA
AGACCTATACTCACCCTCGCTCCCTCCCTCCCTCCCTTCCTCCTTCCCTC
CCTCCCCCTTTACAGGAAGGGCTCGCTGGCGTTATCTCCGGCTCTGTCTC
CAGCGCTATCACCACCCCCTTCGACGTGATCAAGACACGGCTGCAGGTTG
ATCCGACTTCCTACACTGGCCCCTGGGACTGCGGCGTCAAGGTCTTCCAG
AAGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCT
GCACCCAGCTATCAATCTCACATTCCTCTTCAACTCAATCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCGTGACAGGAAGGGATCAGGGGGCTCTACTCGG
GCGTGGTGCCTCGCACCCTCTACATCGGGCCGTCGACAGCGCTCTTCTTT
GTCGCATATGGCGCAGTGCGTTCGTACATGCATCGGGAGAGGTAGGGAGG
GAGCGAAGGAGCGAGAGCAGGGAGACAGGGAAGGGAGGGAGGAAGGGAGG
GAGGAAGGGAGGGAGGATTCGCTGACGCACCCCCTTTTCCCCTCTTTATC
ACACAGCCAAAATCCTGCTAGCATCCTCCAGACTAGCAGCATCAAGAAGG
AGAACACCAAAAGCAGCAGCAGCAGGAGCAAGAGCAGCAGCAACGAGGCG
CCCCATGTGGCCCCTCGTGCCCCTCACTCCTTCTCTCTTCCCGAGCGGCC
ATTCCAAGGAGGGCTGCAGTTCCTCTCCCTCCCATCCTCGCTCCCTTTTT
CCCTCCTCCAGAAACGTCCGCGGGAGGATCGGTTGGAGAATCATCAGCAC
CTGCAGCAGCTGTTGAAAAAAAAGAAGGAGCACAAGTGATATGAAGGAGC
ACAAGTAATAAGAAGACGGAGGAAGGGAATGAAGGCTTGTAAGATAGAGA
CAGGGCAGTCGGCGACGAGCATTGACAACGAGCTCCTGGAGTACAAAGTT
TTAAGAGATGAGCGAGGGGTGCCGCAGAGATCAAAAGCACGGCGAGTACC
GGAGAGGCAGAGACATGGGCGATAGGGGTAAGCGAGAGGAAGGACGGGAG
GTGTCGTCGTCGCTCTCGCGCCAATTTCCTGTCCGGTTTCCTCAGGCACG
CGGGATGGTGGGTGACGGGAGGGTCGGATGATGTTGAGGACGACTTCGAA
AGCAACCAGAGGCCGACATGTGACCAGGGCAAGAGCCGACAGGCACAGGG
AGGCACGATATGAATCTTTATATTATTTTTTGTAAGGAAAACACATAAAG
AAGAAACAAATAGAGGGGAAGTTTTTAATAAAAGAAGACCATGAATGAGA
AACCGAAA back to topCoding sequence (CDS) from alignment at chr25:555506..559513+ >NO25G01860.2 ID=NO25G01860.2|Name=NO25G01860.2|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr25:555506..559513+ (Nannochloropsis oceanica) ATGCATTCCTTAATCTTCCCGTCCTCCCCTCCTTCTGCCAGTGATGCCTC GGCATGGAGGAAAAGACGACGGCAGCAGCAGCAGCAGCAGCAGCAGCGGC AGCAATGGCATTCGGTCCTCTCCGCTTCCATCCTCCTCCTCGTCGTCTTC CTGGGCGGGACGTGCTTGGCCGCTATACCCTCCGCCACGGCTGCCACAAG CACTGGTGGCACCGCTTGGGAATGGCCCTCAAGATTTGTCGTCCAAGCCT CTTCTGCTGTGGACCGCTCCTCCTCCTCCTCCTCCTCCTCCATGGTCACA CCAAAACGGAAGTTTCTCTCCGCCCTCCCCAAGCAGAAACAGAGCAACAG TGCCAACAGCCCAACCCCTGCGACTGCAGTCTCTCTAGCCACCCCTGCTG CTTCCCCATCCTCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCA ACAGCAGCAAATTGGCTGGCCCCAGTGGTGAAGGCGGTGGAAGGGGCAGG AAGTGCCCTGGGGACGTTTGGGCTGGTTATCCAGTCCAAGAAAGACCATC TGGTTGCCGGCGCGGTGGCCCGCGGCTTGGTGGTGGGGAGCTTGCATCCC GTGGACACGATCAAGATCCGAGTGCAAATGTTCGGGAAGGCGGGCCTGCA GCGTCTGAATGTCCAAGCACTATACGCCGGCATCACCTCCTCCCTCTTGG GGCAAATGCCCTATGGGATGCTTGTGTATGGCTCGTATGAAGTCTACAAG GACATGATCGTGGAAGGACTACCACGTCTGGGATCGGATGCCACCTCCCT TGTGGCTGCCGTTCTCTCCGACATCACGGGCTCCATATGGCTTTCCCCCT CGGAAATCGTCAAGCAACAGATGCAGTCGGCGGCGGTGGGAGACAAAACG ACCGTTTTCTCGGCCTTTGCCAACGCCTGGAACGCGGGCGGAATCACGGC CTTCTACCAGGGTTATGGAGGCCTCCTCCTCAGGGACATTCCGTTCCGAG CTTTACAGCTCCCTATGTACGAGCGGGTCAAGGTCTGGTTGGACGACCAC CTTCTCACCGATGCCACCGTCGCCCGCCTGCCCGGAAGCGACCGAAATGC GTGGAGGGAAGGGCTCGCTGGCGTTATCTCCGGCTCTGTCTCCAGCGCTA TCACCACCCCCTTCGACGTGATCAAGACACGGCTGCAGGTTGATCCGACT TCCTACACTGGCCCCTGGGACTGCGGCGTCAAGGTCTTCCAGAAGGAAGG GATCAGGGGGCTCTACTCGGGCGTGGTGCCTCGCACCCTCTACATCGGGC CGTCGACAGCGCTCTTCTTTGTCGCATATGGCGCAGTGCGTTCGTACATG CATCGGGAGAGGTAG back to top
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