|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr25 | genome | chr25:552955..555459 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01850.1 vs.
Match: EWM21695.1 (phytanoyl- dioxygenase [Nannochloropsis gaditana]) HSP 1 Score: 329.7 bits (844), Expect = 9.600e-87 Identity = 155/206 (75.24%), Postives = 178/206 (86.41%), Query Frame = 0
Query: 1 MEGAAVIPLFPSSEDGAARRQVGAYSISLKDKEGYLNDGYIRLPGVLTEEEVLELESVFDAFIEGKMNVPGKDFCDMSQAFGIPFRDWRLVNAMLPREYLPALQ-NNVLEARALSIAQQLLGEDMALDYDQFLCKRPSRDGKANGAIFAWHQDQAYWPQDTPDYRTVTVSLALNEATTDNGCLRVVPGSHKENKLRQHRPVMAGRD 206
M+ +PL PS +DGAARRQ Y I+ +DK+ +L +GYIRLPGVLTEEE +LE VFDAF+EGK+ VPGKDFCDMSQ FG+PF WRLVNAMLPREY P+LQ +NVLEARA SIAQQLLG+DMALDYDQFL KRPSRDG+ANGA+FAWHQDQAYWPQ TPD+RTVTVSLALNEA+ +NGCLRVVPGSH+E KLR HRP++AGRD
Sbjct: 1 MKDLEELPLIPSRDDGAARRQGKTYKITTEDKDAFLTNGYIRLPGVLTEEECAKLEQVFDAFMEGKVQVPGKDFCDMSQRFGVPFEAWRLVNAMLPREYYPSLQEDNVLEARAHSIAQQLLGDDMALDYDQFLMKRPSRDGEANGAVFAWHQDQAYWPQQTPDFRTVTVSLALNEASRENGCLRVVPGSHREKKLRAHRPLLAGRD 206
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01850.1 ID=NO25G01850.1|Name=NO25G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
ACAGACACGATCGTCGCACGCTCAATGGAGGGTGCCGCGGTCATACCCTT
GTTTCCCAGCAGCGAGGATGGCGCGGCCCGGCGTCAGGTCGGAGCGTACT
CCATATCCCTCAAGGATAAGGAAGGCTACTTGAACGACGGCTACATCCGC
CTGCCTGGTGTGCTGACTGAGGAGGAAGTGTTAGAGTTGGAAAGCGTCTT
TGATGCCTTTATAGAGGGGAAAATGAATGTGCCGGGAAAAGACTTTTGTG
ACATGAGTCAGGCGTTCGGTATCCCTTTCCGAGACTGGCGTCTGGTCAAC
GCCATGCTGCCTCGCGAGTACCTCCCTGCTTTGCAGAACAATGTGTTGGA
AGCCCGGGCCCTGTCCATCGCACAGCAGCTACTAGGGGAGGATATGGCGT
TGGATTATGACCAATTTCTGTGCAAACGACCCAGTAGGGACGGGAAGGCT
AACGGCGCCATTTTTGCTTGGCATCAGGACCAGGCCTACTGGCCCCAAGA
CACTCCGGACTACCGCACGGTCACCGTCTCCCTCGCCCTTAACGAGGCCA
CCACCGACAATGGGTGTCTGCGCGTCGTGCCGGGGTCGCACAAGGAAAAT
AAACTGAGACAGCACCGGCCTGTAATGGCGGGGAGGGATGATGCGCATGC
CTTGACGGTGGACTTGGAGCAAGGCGACCATGTCCTGTACCTGCCCCTGC
GGCGGGGTGACGTGACGGTGCATGATGAACGGATCGTCCACGGATCCGAC
GGGAATACCTCCACTGTCAACCCTCGCAAGACGTACGTCATTGCCTTTCG
CTCCAAGGCCACCATTGCCGCTGAGCGGGCCATGGGCTTTACTCACTCCC
ACAATTCAGAGACAAATTGGGACAGTTGGATTAGCTCCTCTACCTTATCG
ACTGCGACGGGCACCAGGAAGAGCAACAGCAACACGAAGGTGGAGGAGTA
AGGAGTTAGGTTGAAAGGGAAGAATGAGCGGGAGGAGATAGGAGAGGCGT
TGTATGATTGTGTTCTATTTTGGTGGTTGTGAAAAGGGGAAGACGAAAAG
AATTCATAAATATGATGGGGTCATGAAGCGAGGAGGAGAAGAGAAAGAAG
GAGAATATAAGACATTGGTCGGCTGTATGAGGTGATGTGAAGGAGAGAAA
GATAAGTAGGAATGAAAATAGA back to topprotein sequence of NO25G01850.1 >NO25G01850.1-protein ID=NO25G01850.1-protein|Name=NO25G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MEGAAVIPLFPSSEDGAARRQVGAYSISLKDKEGYLNDGYIRLPGVLTEE
EVLELESVFDAFIEGKMNVPGKDFCDMSQAFGIPFRDWRLVNAMLPREYL
PALQNNVLEARALSIAQQLLGEDMALDYDQFLCKRPSRDGKANGAIFAWH
QDQAYWPQDTPDYRTVTVSLALNEATTDNGCLRVVPGSHKENKLRQHRPV
MAGRDDAHALTVDLEQGDHVLYLPLRRGDVTVHDERIVHGSDGNTSTVNP
RKTYVIAFRSKATIAAERAMGFTHSHNSETNWDSWISSSTLSTATGTRKS
NSNTKVEE* back to topmRNA from alignment at chr25:552955..555459- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01850.1 ID=NO25G01850.1|Name=NO25G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp|location=Sequence derived from alignment at chr25:552955..555459- (Nannochloropsis oceanica)
ACAGACACGATCGTCGCACGCTCAATGGAGGGTGCCGCGGTCATACCCTT
GTTTCCCAGCAGCGAGGATGGCGCGGCCCGGCGTCAGGTAAGTGTTGGCC
TCCTCCTTCCCCTCCCCAGTGTACCCTCGCCCGCCCTCCCACCCATCAGC
ACCTGCGACACGTGACGCGTACATTCGAGAGATAGCATTCATATTTGCTG
CAGCTATCGCCGTGATTTATATCTAGTCTACCGCCACCTACGCCAAACAG
GTCGGAGCGTACTCCATATCCCTCAAGGATAAGGAAGGCTACTTGAACGA
CGGCTACATCCGCCTGCCTGGTGTGCTGACTGAGGAGGAAGTGTTAGAGT
TGGAAAGCGTCTTTGATGCCTTTATAGAGGGGAAAATGAATGTGCCGGGA
AAAGACTTTTGTGACATGAGTCAGGCGGTACGAATGAGCGGAAGGGGAAG
GCCGGGAGGAGGGGGTGTGTGCATGCATACGTGCGTGCTTTGATCCTGAA
CCCTGCTCTCAATCGTTTCGGTTCTGCTCCATCTCATTAAGTTTCCACAT
TTTCTAAATCTCCTCGTCTCTTTTTTTCGCTCCCTCTGTTCCTCCCATCA
GTTCGGTATCCCTTTCCGAGACTGGCGTCTGGTCAACGCCATGCTGCCTC
GCGAGTACCTCCCTGCTTTGCAGAACAATGTGTTGGAAGCCCGGGCCCTG
TCCATCGCACAGCAGCTACTAGGGGAGGATATGGCGTTGGATTATGACCA
ATTTCTGTGCAAACGACCCAGTAGGTACGGATAGAGGAAGGAGAGGGAGG
AGGGAGGGATGGAGGAAGGAAAGGTGTGAGGTAGGAAACATCTCACATCT
GTGAGCTCCTCCGCATCCCCGCCTCGTACTTTTCACCGCAGGGACGGGAA
GGCTAACGGCGCCATTTTTGCTTGGCATCAGGACCAGGTAAAGAGTAGCT
GTCCGCCTTGTGCAACCAATCGCTCATTGCTTTTCTCCGCTTGTTTCACT
CGCTCGCGGGTCCACACATATCTCCTTCCTCCCAACCCCTACTTGACCCC
TTCAATACCCCAACGATCCAATAACCTAGTAGTTTCCTAAATCCCAAATT
ATCCTAATGACATTAGCAACCTAATTCCCCATAATCATAATTCCAATAAT
CAATTCCAACGACACCAAGGCCTACTGGCCCCAAGACACTCCGGACTACC
GCACGGTCACCGTCTCCCTCGCCCTTAACGAGGCCACCACCGACAATGGG
TGTCTGCGCGTCGTGCCGGGGTCGCACAAGGAAAATAAACTGAGACAGCA
CCGGCCTGTAATGGCGGGGAGGGATGGTAATTGAGAAAAAGCGGCGGGAG
GGAGGGAGGGAGGGAGGAAGGGAGAGGGGAGGGAGGAAAAGATCAAGTTT
TCTCACTGCATCTAAGTTGTTGTTGCTTTTGTCTTTGTCGATACACGTGC
AATACAGATGCGCATGCCTTGACGGTGGACTTGGAGCAAGGTATGTAAAG
GCGTGGCTTCAAAGGAACGAAGGAGATGCCAGGGAGAAGAAACACAGGGG
GAAGGAAGGGGGAAGAGGAAGAGATGTCCGCTCATACACACAGCGGGGCA
TCTTCCTCACTTCGTCCGTCTCTCTATCCTCTTTCTACTCCATGTCTTCC
ACATACATAGGCGACCATGTCCTGTACCTGCCCCTGCGGCGGGGTGACGT
GACGGTGCATGATGAACGGATCGTCCACGGATCCGGTAAGTCGGACACTT
AATTGGGGGGGAAACACGGGCAAGGCGAGGCGTGCACAGAATACGGACAA
AAGGGGAGAAATCAGTGCGTCACTACTGAGGCAGCTTTTTTCATGCTCCA
CGGACATACACACTCTCCTCTGTTTACAGACGGGAATACCTCCACTGTCA
ACCCTCGCAAGACGTACGTCATTGCCTTTCGCTCCAAGGTACGCACGGAC
ATCCCATGTCCTCCCTTTCTTCCTTGCTGCCCTCCTTTCTGACCACGCAT
CTACAAAGAGTGGGCTATTTCAAGGATGCATTTCCCATGATAGCTGCCAT
TCTCACTCGCTTAATCACGCACATCACCTCCCCGGTCACCTTCCCTCCCT
ACTGCCCCTCCCCCCTCTTCCCTTTTTGCCGACTCGCCAGGCCACCATTG
CCGCTGAGCGGGCCATGGGCTTTACTCACTCCCACAATTCAGAGACAAAT
TGGGACAGTTGGATTAGCTCCTCTACCTTATCGACTGCGACGGGCACCAG
GAAGAGCAACAGCAACACGAAGGTGGAGGAGTAAGGAGTTAGGTTGAAAG
GGAAGAATGAGCGGGAGGAGATAGGAGAGGCGTTGTATGATTGTGTTCTA
TTTTGGTGGTTGTGAAAAGGGGAAGACGAAAAGAATTCATAAATATGATG
GGGTCATGAAGCGAGGAGGAGAAGAGAAAGAAGGAGAATATAAGACATTG
GTCGGCTGTATGAGGTGATGTGAAGGAGAGAAAGATAAGTAGGAATGAAA
ATAGA back to topCoding sequence (CDS) from alignment at chr25:552955..555459- >NO25G01850.1 ID=NO25G01850.1|Name=NO25G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr25:552955..555459- (Nannochloropsis oceanica)
ATGGAGGGTGCCGCGGTCATACCCTTGTTTCCCAGCAGCGAGGATGGCGC
GGCCCGGCGTCAGGTCGGAGCGTACTCCATATCCCTCAAGGATAAGGAAG
GCTACTTGAACGACGGCTACATCCGCCTGCCTGGTGTGCTGACTGAGGAG
GAAGTGTTAGAGTTGGAAAGCGTCTTTGATGCCTTTATAGAGGGGAAAAT
GAATGTGCCGGGAAAAGACTTTTGTGACATGAGTCAGGCGTTCGGTATCC
CTTTCCGAGACTGGCGTCTGGTCAACGCCATGCTGCCTCGCGAGTACCTC
CCTGCTTTGCAGAACAATGTGTTGGAAGCCCGGGCCCTGTCCATCGCACA
GCAGCTACTAGGGGAGGATATGGCGTTGGATTATGACCAATTTCTGTGCA
AACGACCCAGTAGGGACGGGAAGGCTAACGGCGCCATTTTTGCTTGGCAT
CAGGACCAGGCCTACTGGCCCCAAGACACTCCGGACTACCGCACGGTCAC
CGTCTCCCTCGCCCTTAACGAGGCCACCACCGACAATGGGTGTCTGCGCG
TCGTGCCGGGGTCGCACAAGGAAAATAAACTGAGACAGCACCGGCCTGTA
ATGGCGGGGAGGGATGATGCGCATGCCTTGACGGTGGACTTGGAGCAAGG
CGACCATGTCCTGTACCTGCCCCTGCGGCGGGGTGACGTGACGGTGCATG
ATGAACGGATCGTCCACGGATCCGACGGGAATACCTCCACTGTCAACCCT
CGCAAGACGTACGTCATTGCCTTTCGCTCCAAGGCCACCATTGCCGCTGA
GCGGGCCATGGGCTTTACTCACTCCCACAATTCAGAGACAAATTGGGACA
GTTGGATTAGCTCCTCTACCTTATCGACTGCGACGGGCACCAGGAAGAGC
AACAGCAACACGAAGGTGGAGGAGTAA back to top
|