Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr25 genome chr25:546019..549934 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01830.4 vs.
Match: EWM21692.1 (Peptidase aspartic [Nannochloropsis gaditana])
HSP 1 Score: 316.2 bits (809), Expect = 1.800e-82
Identity = 177/308 (57.47%), Postives = 222/308 (72.08%), Query Frame = 0
Query: 5 IISADALARSGRAEGRSKESSLSSSSPSSSHLRGRN-DPTDFDKGTKDNASVAEAIHHPMTTLDPRLTAYFATLIFEGNQALQLLVDTGSPALLLPVIPTAALSVIPERNAVVDMEPGTLHPLISPSSSPSSPSSSPSSSSSASASSERGVGMTTRLDHTKAEATVLACEDPRCQGRCHTPDANHFCGPHGGSCQRSPLFPPALPPSLPPALPADKRRKE----GGKEGGTEDMPENQCSFSWSFGAGQYSSQASGVLMKGNVSLGPLKVEEATFGAILEASPGFYPAPAAAGILGLSFGNNTLCGPE 308
I S+ + + S + S SS SSSS SSS +R R+ PT+ +KG D A+VA ++HP+TTLDPRLTAYFATL FEG QAL+LLVDTGSPALLLPV P+ +L + +R +VV++ P + PL++P+S + E G +TTRL+HT A+ATVLACED RCQGRCH+PD +HFCGPHGGSC++SP+ P+LP S PP+L DK+R+E +E E +PENQC F+W+FGAG Y+S+ASGVLM G VSLGPL+VEE FG IL AS GFYPAP AAGILGLSFGNN+LCG E
Sbjct: 71 IRSSSSSSSSSSSSSSSFSSSSSSSSSSSSSMRLRSVSPTERNKG--DGAAVA--VYHPITTLDPRLTAYFATLTFEGGQALRLLVDTGSPALLLPVAPSPSLGRVSQRASVVEVGPPSFQPLVTPAS--------------VAGGREGGGRITTRLNHTLAQATVLACEDQRCQGRCHSPDESHFCGPHGGSCRKSPVLSPSLPVSFPPSLYGDKKRREERGKDAEEQAMESLPENQCFFNWTFGAGLYASEASGVLMTGTVSLGPLQVEEVVFGGILHASLGFYPAPTAAGILGLSFGNNSLCGSE 360
The following BLAST results are available for this feature:
BLAST of NO25G01830.4 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 1.80e-82 / Id = 57.47 Sequence EWM21692.1
Match Name E-value Identity Description
EWM21692.1 1.800e-82 57.47 Peptidase aspartic [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO25G01830.4 ID=NO25G01830.4|Name=NO25G01830.4|organism=Nannochloropsis oceanica|type=mRNA|length=2936bp back to top protein sequence of NO25G01830.4
>NO25G01830.4-protein ID=NO25G01830.4-protein|Name=NO25G01830.4|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp back to top mRNA from alignment at chr25:546019..549934+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01830.4 ID=NO25G01830.4|Name=NO25G01830.4|organism=Nannochloropsis oceanica|type=mRNA|length=3916bp|location=Sequence derived from alignment at chr25:546019..549934+ (Nannochloropsis oceanica)ATGAAGGGAAGCATTATCTCGGCTGATGCTCTAGCCAGGAGCGGACGGGC
CGAGGGGAGGAGCAAGGAATCCTCCCTTTCCTCCTCCTCCCCCTCGTCCT
CGCACCTCCGAGGCCGCAATGATCCCACCGACTTCGACAAAGGCACCAAG
GACAACGCTTCGGTGGCTGAAGCAATCCATCATCCGATGACGACGCTAGA
CCCCCGGCTGACCGCTTACTTTGCGACGTTGATTTTCGAGGGCAACCAGG
CCCTGCAGTTGCTAGTGGATACGGGCAG GTAGGCAGGGAGGGAGGGAAGG
AAGGATGGGAGGGAAGAGCAGTATGGGACAGAGAAGGGCATGGCGTTTAC
GCGTTTACGTGTTTCATTGCATTTATGTCCATGAAGGTGTGTGACGTGCA
TGAAGGTTCGCAGCTGCACTCCTCGCCTGCCTCTCTTTCTCCTTCCGCCC
CCCCCACATTCAAATTTTCAAACGTCCTTGCCCCCACTCTCCCTCATCAT
CCTCCCATGTTGTGGGTCGTCTTAACTTTATCGATACCAACACCTTCCCT
CCCTACCTCCTTCTCTCCCTCCTCATCAGTCCCGCCCTCCTCCTTCCAGT
CATACCCACTGCCGCCCTCAGCGTCATCCCCGAGCGGAACGCCGTGGTGG
ACATGGAGCCTGGAACCCTGCACCCCCTCATCTCCCCTTCCTCCTCCCCT
TCCTCTCCCTCCTCCTCCCCCTCCTCCTCTTCGTCTGCCTCTGCCTCATC
GGAGAGAGGGGTGGGTATGACCACGCGACTGGATCACACCAAGGCGGAGG
CGACGGTCTTGGCCTGCGAGGACCCCCG GTAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAG
GAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCTTCGCCATCA
CGGTACACTCCCAGGGCATGGACCTCATTTTCCTCCCTTCCTCTCTCCCC
CCCTCGCTCCCTTCCTCTTGCCCCCCTCAGGTGCCAGGGTCGATGCCACA
CTCCTGACGCCAACCACTTTTGTGGCCCACACGGCGGGTCCTGTCAGCGC
TCCCCCCTCTTTCCTCCCGCCCTCCCTCCCTCGCTTCCCCCCGCCCTCCC
CGCGGACAAACGACGGAAGGAGGGCGGGAAGGAAGGAGGGACGGAGGACA
TGCCAGAGAACCAGTGCTCTTTCAGTTGGTCGTTTGGGGCGGGGCAGTAC
TCGAGTCAGGCATCAG GTGAGGGAGGGAGGGAGGGAGGGGGGGAGCGAAG
GAGGGTAGCAGACGATCCATCACATTCTGTTCCCGCTCTTCTTGACCACG
CACCTCCTACTCTATCGAACCCCTTCCTTTCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCAAGGCGTCCTGATGAAGGGCAATGTGTCCCTGG
GCCCTCTCAAGGTGGAAGAAGCCACGTTTGGGGCGATCCTCGAG GTAGGT
AGGTAGGGAGGGAGGGAGCGAAGGGGGGGCTATCATCTCAGTCACTCGGT
GTAGGTCCACACACACCTGCTGCCCTTCAACCCCCACTCACCCTCCTCGC
CCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCAGGCCTCTCCGGGCTTCTACCCCGCA
CCCGCCGCGGCGGGTATTCTTGGCCTGTCTTTTGGAAACAACACTTTGTG
TGGACCCGAACACACCTGCTGGCCCCCCCTCCTTGATTCCCTCCCTCCCC
CGGCACCTGACGCCTTCACCCTGTGCGCCGACGGCGATCGGGGCGCGGCC
CTCGTCCTCGGCGGGGTCGACCATTCGCTGGCCCTGGGCGGGCGGGAGGG
AGGGAGGGAGGCAGGGAGGGAGGGGGGGAAGAAGGGAGGGATCGGCTATG
TGCCCATGCTTCCTCCTTTTGCTCATTACTGGATCCGGGTGAAAGACCTG
AGGATTCGCGGCGAATCGTTGTTCCTTCCCGTCCTTGCAGCTGCAGCTGC
AGCAGCTGCTGCTGCGGGGCTGGAGGAAGGGAGGCGGTGTGCGCCCTCCC
TCCCTTCCTCGATTTTGGTCCCGCGGCCTCCAATGCCGTGTGCTCTGGCG
TCACGGGCAGCCATCCCCACGGTCACCAGCAGCAGCAGCAGTGGTGGTGG
TGGTGGTGATGGTGGTGGGAGTGCGGAGGAGGCGACCCTCCACCCCGCCC
TCGACGACGTGCCGCTCGACACGGCCATGGTGGACTCGGGAAACAGGTGG
GGAAGGAGGAAGGGGGGGACGGAGGGAGGGGCGGAGGTAGGGGTGGGAAC
CTGGAGGGGGTTTCACCATTGA back to top Coding sequence (CDS) from alignment at chr25:546019..549934+
>NO25G01830.4 ID=NO25G01830.4|Name=NO25G01830.4|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr25:546019..549934+ (Nannochloropsis oceanica) back to top