NO25G01560.1, NO25G01560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G01560.1
Unique Name	NO25G01560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2043
Alignment location	chr25:442904..444946 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:442904..444946 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO25G01560.1 vs.

BLAST of NO25G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G01560	NO25G01560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G01560.1	NO25G01560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G01560.1.cds1	NO25G01560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:442904..444946-
coding sequence from alignment at chr25:442904..444946-

mRNA sequence

>NO25G01560.1 ID=NO25G01560.1|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp
CAACAGGTTTGGAACCTAGGACTCAACATGACCCTGGCAACTGTCCTAGA
CATCGGGGGGACCGATTCCCGGGCCACTAGTATCCCTTCGGAACAGATCG
TCTCAGAGCATGGCAATCACCAAGTATGCAATGGACACAGCAGCCATGAC
GACGACGTCAAGACCGCTGCTCTTCCCACTGGATTGGAAACCGATACCAG
CACCAACGGCAGGGACCATGTGCGAAGCAGCAGCCACGTCAACAACGCCA
CGACTGCTGCTCTCCCCACAGAATTGGAGGCTGGTGCCAGCAATAAGCTC
TCCGCGCCTGTCCGGATCAGCATTGCCTTGCCTCCTGTAGATTCCAAGCT
CTCTGTGTCCCATGGAGGAGTCGGGAATGATCTCTCCGGGAGTGATATCA
ACTGCTCCTTTGAGAGCATGTCGGCCTCGGCCGTCTCTTCTGCCTCTTCT
TCCTTTTCCTCCAATTCCTCCTTCTCATCCTATGACTCCTTTGTCTCGGC
CACTGCCGACATCCTAGAGGCCATGGAAATGATCCCGCCACTTCCAAAAA
GCAGCAAAAAGAAGGGAAGGAAAGAAAAGCAAACTCAGAATAAAGTGACG
ATGACGAACGATTGTGTGAAATCTCCTCCTCTTGCTGCTACCAGTTTTGA
GGCAAGTAATGGCAGGAGTCAGGAGCAGCAGCATCGGGCAGAGGAGGAAG
GAAAATCCATCGAGGGAGAAGAGCTGGAAATGAGGAAGAAGGATGGCAAG
GAGGGGAGCAGGAAGGATAAGAGGAGGGAGGCCTCGGAGGAGGACTTCAA
GGAGGAGAGACGTCAAAAAGAAGAACTCATCATCAACGGCAGCAGCAATT
GCACGCGAGGAGCGGAGACAACGATAAAAAAGCGCAGTGGATGCAGTGAG
ATGAGAGAGAAAAGCGTGAATGGTATCTCTTCAGAAACTGCAGCAGCAGT
CTCAGCAGCAGCAGTAGCAGCCGCAGCCGCAGCCGCAGCAGCCACAGCAG
CAGAAGAAGCAGCAGAAGCAGCAGCAGCCACCACCACCATCACTGACATT
AAAAAGACTCACGGAACACCAAGCAGTACCAGCAACAATCAAAGGATGGG
CCTCTTATTGGATCCCCCCTCCTCCTCTCATGCCTCCTCCATGTTCGCCT
CCCCCTCACCCATCTTCCCTTCGTCCATTCTTTCCTCCTCCTCCTCCCCC
AACTCCCCTACGGATGACGCCGACCTACCTTCCTCTAACACCATAACTTT
CCAACAATTAAAACGAGGAGGGGGGTATGAAGGGATAGAGGAGGGCATGT
ACGAAGATGAAGGAGCGGGGGGATGTAAAAGAGTCCTTGGGTTGGTGGAG
GAGGAAGAGGGCGTGTTCGAGGTACCTACATTCAACTCCTTCATGTCGAG
AGAGGCAGCATTCAAGAGAGAGGCCGTTAGGGTGGGATGGAGGGTGTTGG
CGCGGGTGGTGGTGGGGGTGGGGTTGGCTGGCATTGTGGCGTGGGTGTTT
ATGATGTATAGATGAATGTGGAAGAGAGGAAGAGAAGGGGGGGGTAGGGG
TTCACGCGCACCTCAATAGATGATGGTGATGGTGATATGATGATGGTGAT
GATGGAGATGATTCGGTAATGATGGTGATTGACTGTGGTAAGTGGGAAGA
CCGACCGACTCCCCTATGAGCTAGAAAATGCTGATTTAAATGTGCTTTCG
TCTACTTCTTAAATTTTTATTTTTTTTTCTATAAATCGGGGTCGAAATGG
AAGAGCAGTTGCGGGTTGTGTGTTTGCGTGTGTGTAGATGTGAAGGCGTG
TGTAGGGCTGCGTCCATGCCATGTCATTGCGGTACGACCGAATACGAGAG
AGATAGAGGGCAATCGAGAGATTGATTCCTCGCTCATATTCAAAGTAAAG
GAAGAGGGTAGAGATAAATCTGGGGAAAGAACTTCGCAACACCACAGTGA
AAACGGCGAAGGATGACAGAAATTCAAAGAGGGACGGGAAAGAATAAAGA
ACCACAAGGTTAGAAATTTTGAGGGCCATTCAATGCCAATGAG

protein sequence of NO25G01560.1

>NO25G01560.1-protein ID=NO25G01560.1-protein|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MTLATVLDIGGTDSRATSIPSEQIVSEHGNHQVCNGHSSHDDDVKTAALP
TGLETDTSTNGRDHVRSSSHVNNATTAALPTELEAGASNKLSAPVRISIA
LPPVDSKLSVSHGGVGNDLSGSDINCSFESMSASAVSSASSSFSSNSSFS
SYDSFVSATADILEAMEMIPPLPKSSKKKGRKEKQTQNKVTMTNDCVKSP
PLAATSFEASNGRSQEQQHRAEEEGKSIEGEELEMRKKDGKEGSRKDKRR
EASEEDFKEERRQKEELIINGSSNCTRGAETTIKKRSGCSEMREKSVNGI
SSETAAAVSAAAVAAAAAAAAATAAEEAAEAAAATTTITDIKKTHGTPSS
TSNNQRMGLLLDPPSSSHASSMFASPSPIFPSSILSSSSSPNSPTDDADL
PSSNTITFQQLKRGGGYEGIEEGMYEDEGAGGCKRVLGLVEEEEGVFEVP
TFNSFMSREAAFKREAVRVGWRVLARVVVGVGLAGIVAWVFMMYR*

mRNA from alignment at chr25:442904..444946-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G01560.1 ID=NO25G01560.1|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at chr25:442904..444946- (Nannochloropsis oceanica)
CAACAGGTTTGGAACCTAGGACTCAACATGACCCTGGCAACTGTCCTAGA
CATCGGGGGGACCGATTCCCGGGCCACTAGTATCCCTTCGGAACAGATCG
TCTCAGAGCATGGCAATCACCAAGTATGCAATGGACACAGCAGCCATGAC
GACGACGTCAAGACCGCTGCTCTTCCCACTGGATTGGAAACCGATACCAG
CACCAACGGCAGGGACCATGTGCGAAGCAGCAGCCACGTCAACAACGCCA
CGACTGCTGCTCTCCCCACAGAATTGGAGGCTGGTGCCAGCAATAAGCTC
TCCGCGCCTGTCCGGATCAGCATTGCCTTGCCTCCTGTAGATTCCAAGCT
CTCTGTGTCCCATGGAGGAGTCGGGAATGATCTCTCCGGGAGTGATATCA
ACTGCTCCTTTGAGAGCATGTCGGCCTCGGCCGTCTCTTCTGCCTCTTCT
TCCTTTTCCTCCAATTCCTCCTTCTCATCCTATGACTCCTTTGTCTCGGC
CACTGCCGACATCCTAGAGGCCATGGAAATGATCCCGCCACTTCCAAAAA
GCAGCAAAAAGAAGGGAAGGAAAGAAAAGCAAACTCAGAATAAAGTGACG
ATGACGAACGATTGTGTGAAATCTCCTCCTCTTGCTGCTACCAGTTTTGA
GGCAAGTAATGGCAGGAGTCAGGAGCAGCAGCATCGGGCAGAGGAGGAAG
GAAAATCCATCGAGGGAGAAGAGCTGGAAATGAGGAAGAAGGATGGCAAG
GAGGGGAGCAGGAAGGATAAGAGGAGGGAGGCCTCGGAGGAGGACTTCAA
GGAGGAGAGACGTCAAAAAGAAGAACTCATCATCAACGGCAGCAGCAATT
GCACGCGAGGAGCGGAGACAACGATAAAAAAGCGCAGTGGATGCAGTGAG
ATGAGAGAGAAAAGCGTGAATGGTATCTCTTCAGAAACTGCAGCAGCAGT
CTCAGCAGCAGCAGTAGCAGCCGCAGCCGCAGCCGCAGCAGCCACAGCAG
CAGAAGAAGCAGCAGAAGCAGCAGCAGCCACCACCACCATCACTGACATT
AAAAAGACTCACGGAACACCAAGCAGTACCAGCAACAATCAAAGGATGGG
CCTCTTATTGGATCCCCCCTCCTCCTCTCATGCCTCCTCCATGTTCGCCT
CCCCCTCACCCATCTTCCCTTCGTCCATTCTTTCCTCCTCCTCCTCCCCC
AACTCCCCTACGGATGACGCCGACCTACCTTCCTCTAACACCATAACTTT
CCAACAATTAAAACGAGGAGGGGGGTATGAAGGGATAGAGGAGGGCATGT
ACGAAGATGAAGGAGCGGGGGGATGTAAAAGAGTCCTTGGGTTGGTGGAG
GAGGAAGAGGGCGTGTTCGAGGTACCTACATTCAACTCCTTCATGTCGAG
AGAGGCAGCATTCAAGAGAGAGGCCGTTAGGGTGGGATGGAGGGTGTTGG
CGCGGGTGGTGGTGGGGGTGGGGTTGGCTGGCATTGTGGCGTGGGTGTTT
ATGATGTATAGATGAATGTGGAAGAGAGGAAGAGAAGGGGGGGGTAGGGG
TTCACGCGCACCTCAATAGATGATGGTGATGGTGATATGATGATGGTGAT
GATGGAGATGATTCGGTAATGATGGTGATTGACTGTGGTAAGTGGGAAGA
CCGACCGACTCCCCTATGAGCTAGAAAATGCTGATTTAAATGTGCTTTCG
TCTACTTCTTAAATTTTTATTTTTTTTTCTATAAATCGGGGTCGAAATGG
AAGAGCAGTTGCGGGTTGTGTGTTTGCGTGTGTGTAGATGTGAAGGCGTG
TGTAGGGCTGCGTCCATGCCATGTCATTGCGGTACGACCGAATACGAGAG
AGATAGAGGGCAATCGAGAGATTGATTCCTCGCTCATATTCAAAGTAAAG
GAAGAGGGTAGAGATAAATCTGGGGAAAGAACTTCGCAACACCACAGTGA
AAACGGCGAAGGATGACAGAAATTCAAAGAGGGACGGGAAAGAATAAAGA
ACCACAAGGTTAGAAATTTTGAGGGCCATTCAATGCCAATGAG

Coding sequence (CDS) from alignment at chr25:442904..444946-

>NO25G01560.1 ID=NO25G01560.1|Name=NO25G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr25:442904..444946- (Nannochloropsis oceanica)
ATGACCCTGGCAACTGTCCTAGACATCGGGGGGACCGATTCCCGGGCCAC
TAGTATCCCTTCGGAACAGATCGTCTCAGAGCATGGCAATCACCAAGTAT
GCAATGGACACAGCAGCCATGACGACGACGTCAAGACCGCTGCTCTTCCC
ACTGGATTGGAAACCGATACCAGCACCAACGGCAGGGACCATGTGCGAAG
CAGCAGCCACGTCAACAACGCCACGACTGCTGCTCTCCCCACAGAATTGG
AGGCTGGTGCCAGCAATAAGCTCTCCGCGCCTGTCCGGATCAGCATTGCC
TTGCCTCCTGTAGATTCCAAGCTCTCTGTGTCCCATGGAGGAGTCGGGAA
TGATCTCTCCGGGAGTGATATCAACTGCTCCTTTGAGAGCATGTCGGCCT
CGGCCGTCTCTTCTGCCTCTTCTTCCTTTTCCTCCAATTCCTCCTTCTCA
TCCTATGACTCCTTTGTCTCGGCCACTGCCGACATCCTAGAGGCCATGGA
AATGATCCCGCCACTTCCAAAAAGCAGCAAAAAGAAGGGAAGGAAAGAAA
AGCAAACTCAGAATAAAGTGACGATGACGAACGATTGTGTGAAATCTCCT
CCTCTTGCTGCTACCAGTTTTGAGGCAAGTAATGGCAGGAGTCAGGAGCA
GCAGCATCGGGCAGAGGAGGAAGGAAAATCCATCGAGGGAGAAGAGCTGG
AAATGAGGAAGAAGGATGGCAAGGAGGGGAGCAGGAAGGATAAGAGGAGG
GAGGCCTCGGAGGAGGACTTCAAGGAGGAGAGACGTCAAAAAGAAGAACT
CATCATCAACGGCAGCAGCAATTGCACGCGAGGAGCGGAGACAACGATAA
AAAAGCGCAGTGGATGCAGTGAGATGAGAGAGAAAAGCGTGAATGGTATC
TCTTCAGAAACTGCAGCAGCAGTCTCAGCAGCAGCAGTAGCAGCCGCAGC
CGCAGCCGCAGCAGCCACAGCAGCAGAAGAAGCAGCAGAAGCAGCAGCAG
CCACCACCACCATCACTGACATTAAAAAGACTCACGGAACACCAAGCAGT
ACCAGCAACAATCAAAGGATGGGCCTCTTATTGGATCCCCCCTCCTCCTC
TCATGCCTCCTCCATGTTCGCCTCCCCCTCACCCATCTTCCCTTCGTCCA
TTCTTTCCTCCTCCTCCTCCCCCAACTCCCCTACGGATGACGCCGACCTA
CCTTCCTCTAACACCATAACTTTCCAACAATTAAAACGAGGAGGGGGGTA
TGAAGGGATAGAGGAGGGCATGTACGAAGATGAAGGAGCGGGGGGATGTA
AAAGAGTCCTTGGGTTGGTGGAGGAGGAAGAGGGCGTGTTCGAGGTACCT
ACATTCAACTCCTTCATGTCGAGAGAGGCAGCATTCAAGAGAGAGGCCGT
TAGGGTGGGATGGAGGGTGTTGGCGCGGGTGGTGGTGGGGGTGGGGTTGG
CTGGCATTGTGGCGTGGGTGTTTATGATGTATAGATGA

Synonyms

Publications