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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:418078..422363 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01470.1 vs.
Match: EWM21663.1 (beta-lactamase [Nannochloropsis gaditana]) HSP 1 Score: 263.5 bits (672), Expect = 1.700e-66 Identity = 125/199 (62.81%), Postives = 152/199 (76.38%), Query Frame = 0
Query: 1 MGAATWTYKAVLFLLSSLVAL------QGIRTAGAQNAMPYARPEEVNVSPDIAARIQPVLDQFTRSRKLPGSIVMIARHGKIIVEQYSGYDNPNYIFRLFSQSKPITAAATLVCVDKGLFGLDDPITNFIPEFKNLRVLVPGTSGANMQTVPLRRQITIRHLLTHTSGFVYGDGGDSVVDEMYRSVKMLDLWDQDLEG 194
MG TWT F+L + L + + +MPYA P+EV VS DI R+QP+LD+ T RK+PGS+VM+ARHGKII+EQ+SGYDNP+YIFRLFSQSKPITAAATL+CVD LF L+DPI FIPEF+ LRV+V T GA ++T PLRR+ITIRHLLTHT GFVYGDGGD+VVDEMYR+ K+LDLW QD++G
Sbjct: 1 MGGGTWTNAVAPFVLLAFAILGEGAPHRWTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPHYIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVLDLWGQDMDG 199
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01470.1 ID=NO25G01470.1|Name=NO25G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp ATGGGGGCCGCCACATGGACCTACAAGGCGGTGCTTTTCCTCCTCTCCTC CCTCGTCGCCCTTCAAGGCATCCGCACCGCCGGAGCTCAAAATGCCATGC CCTACGCCAGACCTGAGGAGGTCAATGTCAGCCCAGACATTGCTGCACGC ATCCAACCAGTGTTAGACCAGTTCACCCGCTCTCGCAAGCTGCCTGGCTC GATTGTGATGATCGCGAGGCACGGCAAGATTATAGTAGAGCAGTATTCAG GCTACGACAATCCTAATTACATCTTTCGCCTCTTCTCTCAGTCCAAGCCT ATAACTGCCGCCGCCACTCTGGTCTGTGTCGATAAAGGTCTTTTCGGATT GGACGATCCCATCACCAACTTCATCCCCGAGTTCAAGAACTTGCGCGTCC TTGTGCCCGGCACCAGCGGCGCCAACATGCAGACTGTGCCCCTTCGACGA CAAATCACGATACGACACCTCCTCACGCATACATCCGGCTTCGTCTATGG CGATGGAGGTGATTCGGTGGTGGATGAAATGTATCGGTCGGTCAAGATGC TGGATCTGTGGGACCAAGACCTGGAGGGCTTCATAGCCAAGCTGGCCGGT ATGCCCTTGCTCACGCAGCCTGGAACAGAGTGGCGGTACTCCGTCGGCTT CGATGTGCTTGGCGCCATCATCCAACGTGCGTCCCAGATGTCCTATGACG TCTTTCTCCAAGAGCACCTCTTCAAGCCCCTCTCCATGGTGGACACCGGC TTCGTCGTCCCTCCTGAGCAACAAGCCCGTCTGGTGCCACACCGACTTCA CCAAACGACCCCGCCTGCTGTCGGGAGGGGGGGGCTGGTCAGTACGGCCC GGGACTACATGCATTTTGCCACCATGCTCCTCAATGGGGGGGTGCTAAAC GGCCAGCGTGTCCTAAATCTTGATTCGGTGATCGAAATGTGGACTTCGCA GCTCCCTCCTTCCATGATGCCTTTCAAGATGGGATCCATCGTCTTCAAGA GCTCGGACTTCGGCTTCGCCTGGGCGATTCAAAACGCCTACGAGTCTCCA AATGAAATCGCGGGAGAAGCTGGGTGGGGCGGCGCAGCCAGCACCAACTT TTGGGCCTGTCCGGAGACGGATACTGTCATTGTCGCCATGACGCAGATCG CCCCATTTTTCAATGGCCTGGCCGAAAACGTCCGTCCTATCGTGTACCGC AGTCTCCTTGACTGGCACCAGCCTCCACCCATGACGGTCAATCCAAGTAC TCCCGCAGGGCCAAACCAAATGCGGAGCAATGGCGGTCCCTCAGAAAAGC AAGCGGCTAAGCGCGGCATTGGCCCCTTACCGGAAGGGGGAGGGATAGAC ACTCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACA ACAACAACAACAAACAACAACAACAACAACAACAACAACAACAACAAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACCACAAGGACAACAACAACAACAA CCACAAGGACAACAACAACAACAACCACAAGGACAACAACAACAAGAGCA AGAGCAACCGCCGGAGCCACCTAACCAGGAGGGATCTCAGGAGCATCCTC CCACTGATACTACTCCTGATGATGGTGATACCGATGCTGATGCTGACGCT GCAGCCGCGGCTGCTGCTGCTGCCGCGGCTGCTGCTGCTGCTGCTCAACA GAATACACCTTCCAAGAAACCAAAACGAGGTCCACCTCCAAGAGGCACAT GGGGCTCGATAGTGGGAGGAGCAATGGTAGGGAGGTTGCGATAGAGGGCA GGAATAACTGAATGACATGACTGGAAATATTCAAATGACGCGAAATGAAG GAGAGGAGGAGGG back to topprotein sequence of NO25G01470.1 >NO25G01470.1-protein ID=NO25G01470.1-protein|Name=NO25G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp MGAATWTYKAVLFLLSSLVALQGIRTAGAQNAMPYARPEEVNVSPDIAAR IQPVLDQFTRSRKLPGSIVMIARHGKIIVEQYSGYDNPNYIFRLFSQSKP ITAAATLVCVDKGLFGLDDPITNFIPEFKNLRVLVPGTSGANMQTVPLRR QITIRHLLTHTSGFVYGDGGDSVVDEMYRSVKMLDLWDQDLEGFIAKLAG MPLLTQPGTEWRYSVGFDVLGAIIQRASQMSYDVFLQEHLFKPLSMVDTG FVVPPEQQARLVPHRLHQTTPPAVGRGGLVSTARDYMHFATMLLNGGVLN GQRVLNLDSVIEMWTSQLPPSMMPFKMGSIVFKSSDFGFAWAIQNAYESP NEIAGEAGWGGAASTNFWACPETDTVIVAMTQIAPFFNGLAENVRPIVYR SLLDWHQPPPMTVNPSTPAGPNQMRSNGGPSEKQAAKRGIGPLPEGGGID TQQQQQQQQQQQQQQQQQQQQTTTTTTTTTTTNNNNNNNNNNNNNNNNNN NNNNNNNNNHKDNNNNNHKDNNNNNHKDNNNKSKSNRRSHLTRRDLRSIL PLILLLMMVIPMLMLTLQPRLLLLPRLLLLLLNRIHLPRNQNEVHLQEAH GAR* back to topmRNA from alignment at chr25:418078..422363+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01470.1 ID=NO25G01470.1|Name=NO25G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=4286bp|location=Sequence derived from alignment at chr25:418078..422363+ (Nannochloropsis oceanica) ATGGGGGCCGCCACATGGACCTACAAGGCGGTGCTTTTCCTCCTCTCCTC
CCTCGTCGCCCTTCAAGGCATCCGCACCGCCGGAGCTCAAAATGCCATGC
CCTACGCCAGACCTGAGGTACGTCTCAGATAGAAATCAGCAAGCAAAGGA
CAAGGAGGGTGCCGATTGAGGGACGAACCCAACAGGAGAGCCGTAAAGAG
GGAAGGGAGGAAGGAGGGAAGATGAGTGGGACGGTACAGAGCGGCAGGCC
GTTTTGATGCGAGGTGGTTTCACCCCCAGCCCTATCATGGCGATCGAATT
TTCCTACAATTTTCCTCTCACATTAATTGTACGGCCATATGCAGAGACAA
CCGACGTCTTTCCCCCTCCCTTTCCCATCTGCTTGCCCGTCCTCCCTCCC
TCCCTCTCTCCGTCTCTTCTCCCTGTGCCACAATACCAACCACATATCTA
CCACGAACCAATGTTTAACGACACAGGAGGTCAATGTCAGCCCAGACATT
GCTGCACGCATCCAACCAGTGTTAGACCAGTTCACCCGCTCTCGCAAGCT
GCCTGGCTCGATTGTGATGATCGCGAGGTGAGGAAGGGCAGGGAGAAAGG
AATGGTTATTTTGTATCCCGTTTTGGCATCTTTCACACCAGCACGCATTT
CTCTTTATTTCCTTTTCCTTGCACGGCGGAAATGCCAGGGAGCGTCACTT
GAGCTACGACGATGTCCATCACACCTTCCGCCTCTTCTCCCAATCCACGC
TAACCCTCCCTCCCTCCCTTTCTCACTCCCTCCCTCCCATCCACAGGCAC
GGCAAGATTATAGTAGAGCAGTATTCAGGCTACGACAATCCTAATTACAT
CTTTCGCCTCTTCTCTCAGTCCAAGCCTATAACTGCCGCCGCCACTCTGG
TCTGTGTCGATAAAGGTCTTTTCGGATTGGACGATCCCATCACCAACTTC
ATCCCCGAGTTCAAGGTCCGCCCTCCCTCCCTTCCTCCCTTCCCCCCTCC
CTTTCTTGTCTCGCTACCATCACAATTGTATATATGTGCGTTTGTATACC
CATATGAATGGTTCTATGTCCTTACACTTCTTTATCCCCGTACCTCTCAG
AACTTGCGCGTCCTTGTGCCCGGCACCAGCGGCGCCAACATGCAGACTGT
GCCCCTTCGACGACAAATCACGATACGACACCTCCTCACGCATACATGTA
CGACCATTCTCTCCCTCCCTCGCTCCCTCCCTCCCTCGCTCCCTCCCTCC
CTCCTTCCCTATCTCCGTACCCCAAGCTCTGACTCCCCTCCCTCCCCTCC
CTCCCCTTCCTCTCTCCCTTCCTCTAGCCGGCTTCGTCTATGGCGATGGA
GGTGATTCGGTGGTGGATGAAATGTATCGGTCGGTCAAGATGCTGGATCT
GTGGGACCAAGACCTGGAGGGTGAGTGATGAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGAGGGGATGCTTGCCCTTCATCAATACTCTTTTC
GAATGATTCGCCTGTGTCTGACATCATTATTTTCCTTCCCTTCCCTCCCT
CCCTCTCTCCTTCTTGTTGCTCCAACAGGCTTCATAGCCAAGCTGGCCGG
TATGCCCTTGCTCACGCAGCCTGGAACAGAGTGGCGGTACTCCGTCGGCT
TCGATGTGCTTGGTAGATATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTCCTCCCTTCCTTTTCTCCGTCTCTCGCCTCTCACCCT
CCCTCCCTCCCTCCTTTCCCAGGCGCCATCATCCAACGTGCGTCCCAGAT
GTCCTATGACGTCTTTCTCCAAGAGCACCTCTTCAAGCCCCTCTCCATGG
TGGACACCGGCTTCGTCGTCCCTCCTGAGGTAGGCCCTCTCCCCCTCCCG
CCCTCACTGCCTTTTCTCCCTTGCTGTGGCAACAATAAGCACGTTTGACG
AGGGAGTGGGCATCTACTGCTGCTGTTACTGCGCTTACTCCTCCTGCTGC
TACCGTTGCTGCTGCTGCTGCTGTCGCTGCTACTGCTGCTACGGCTTCCA
CTACTGCCGATTTCCTCTTTCCGTCGTATATACAGCCATCCAAATGGATT
TCACCGACCAGCCGCAGCCGTCCTCGCCCATAAGAGAAACCCACCCCCTC
CCTCCCTCCCTCCCTCCTTCCCTCCCTCTCACCCCCGGCACAGCAACAAG
CCCGTCTGGTGGTGTATTGGACCTCCCTTGCGGCACCTGGCATGCTGGTG
CCCATTCCTTTCATGTACAGCCACACCGACTTCACCAAACGACCCCGCCT
GCTGTCGGGAGGGGGGGGCTGGTCAGTACGGCCCGGGACTACATGCATTT
TGCCACCATGCTCCTCAATGGGGGGGTGCTAAACGGTACGGAAGGAGGGA
GGAAGTGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGACCGG
CGTTGCATACACCGTCACCCCCCCACACGCACCTCTTTTATGGCGTGCTT
ATTCTGGCCATTCGTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCTCGTTAGGCCAGCGTGTCCTAAATCTTGATTCGGTGATCGAAA
TGTGGACTTCGCAGCTCCCTCCTTCCATGATGCCTTTCAAGGTACGACCT
GGCCCTCCCTCCCTCCCTCCTTCCCTCCTTTCCTCCCTCCCTTCCTCTTC
TTATTCCCAGCCTCCTCCTCTCCCGTCCTCTCTTGCTTCACTTCTTTCTT
CCAGTCTCGTTTGATTGCTTACTTTCCTCCCCCCCTTTCTCTCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTTCGAAGATGGGATCCATCGTCTTCAAG
AGCTCGGACTTCGGCTTCGGTACGAGGGCGAGAAGGAGGGGTGGAGGGAG
GGAGGGCGAGAAGGAGGGCAGGGGAGGGAGATGGGGCAAGGGCGGTAAAG
AGAGAGGGCAGGGAGAAGGGTGGAATGAGCAAAGAGAATATGGGAGCTAA
CCTCCAGCTGCCCATTCATTTAACACATATCCGACCGCACCTCTCCCCCC
TTCCTTCCCTCCCTCCCTCCCACCCTCCTTCTCCAGCCTGGGCGATTCAA
AACGCCTACGAGTCTCCAAATGAAATCGCGGGAGAAGCTGGGTGGGGCGG
CGCAGCCAGCACCAACTTTTGGGCCTGTCCGGAGACGGATACTGTCATTG
TCGCCATGACGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGTG
GAAGCAAGCCGCGATCATGGTGTTGAAATATCACCCTCCCCATGCCTTGA
CCCTTGGAGCTTTCGTTCTCCCCTCCCTCCCTTCCTCCCTCCCTTCCTCC
CTTCCTCCCTCCCTTCCTTCCTCCCTCTTCCAGATCGCCCCATTTTTCAA
TGGCCTGGCCGAAAACGTCCGTCCTATCGTGTACCGCAGTCTCCTTGACT
GGCACCAGCCTCCACCCATGACGGTCAATCCAAGTACTCCCGCAGGGCCA
AGTAAGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGAGTGAGAGC
GACAGCGCTACTTTCTAGCCGTTAGATTTTGTCTTTCCCCCCACACGTAC
CTTTCCCCTCCCCCCTCCCTCTCTCTCTTATTTGTAGACCAAATGCGGAG
CAATGGCGGTCCCTCAGAAAAGCAAGCGGCTAAGCGCGGCATTGGCCCCT
TACCGGAAGGGGGAGGGATAGACACTCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAAACAACAACAACAAC
AACAACAACAACAACAACAAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
CACAAGGACAACAACAACAACAACCACAAGGACAACAACAACAACAACCA
CAAGGACAACAACAACAAGAGCAAGAGCAACCGCCGGAGCCACCTAACCA
GGAGGGATCTCAGGAGCATCCTCCCACTGATACTACTCCTGATGATGGTG
ATACCGATGCTGATGCTGACGCTGCAGCCGCGGCTGCTGCTGCTGCCGCG
GCTGCTGCTGCTGCTGCTCAACAGAATACACCTTCCAAGAAACCAAAACG
AGGTCCACCTCCAAGAGGCACATGGGGCTCGATAGTGGGAGGAGCAATGG
TAGGGAGGTTGCGATAGAGGGCAGGAATAACTGAATGACATGACTGGAAA
TATTCAAATGACGCGAAATGAAGGAGAGGAGGAGGG back to topCoding sequence (CDS) from alignment at chr25:418078..422363+ >NO25G01470.1 ID=NO25G01470.1|Name=NO25G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr25:418078..422363+ (Nannochloropsis oceanica) ATGGGGGCCGCCACATGGACCTACAAGGCGGTGCTTTTCCTCCTCTCCTC CCTCGTCGCCCTTCAAGGCATCCGCACCGCCGGAGCTCAAAATGCCATGC CCTACGCCAGACCTGAGGAGGTCAATGTCAGCCCAGACATTGCTGCACGC ATCCAACCAGTGTTAGACCAGTTCACCCGCTCTCGCAAGCTGCCTGGCTC GATTGTGATGATCGCGAGGCACGGCAAGATTATAGTAGAGCAGTATTCAG GCTACGACAATCCTAATTACATCTTTCGCCTCTTCTCTCAGTCCAAGCCT ATAACTGCCGCCGCCACTCTGGTCTGTGTCGATAAAGGTCTTTTCGGATT GGACGATCCCATCACCAACTTCATCCCCGAGTTCAAGAACTTGCGCGTCC TTGTGCCCGGCACCAGCGGCGCCAACATGCAGACTGTGCCCCTTCGACGA CAAATCACGATACGACACCTCCTCACGCATACATCCGGCTTCGTCTATGG CGATGGAGGTGATTCGGTGGTGGATGAAATGTATCGGTCGGTCAAGATGC TGGATCTGTGGGACCAAGACCTGGAGGGCTTCATAGCCAAGCTGGCCGGT ATGCCCTTGCTCACGCAGCCTGGAACAGAGTGGCGGTACTCCGTCGGCTT CGATGTGCTTGGCGCCATCATCCAACGTGCGTCCCAGATGTCCTATGACG TCTTTCTCCAAGAGCACCTCTTCAAGCCCCTCTCCATGGTGGACACCGGC TTCGTCGTCCCTCCTGAGCAACAAGCCCGTCTGGTGCCACACCGACTTCA CCAAACGACCCCGCCTGCTGTCGGGAGGGGGGGGCTGGTCAGTACGGCCC GGGACTACATGCATTTTGCCACCATGCTCCTCAATGGGGGGGTGCTAAAC GGCCAGCGTGTCCTAAATCTTGATTCGGTGATCGAAATGTGGACTTCGCA GCTCCCTCCTTCCATGATGCCTTTCAAGATGGGATCCATCGTCTTCAAGA GCTCGGACTTCGGCTTCGCCTGGGCGATTCAAAACGCCTACGAGTCTCCA AATGAAATCGCGGGAGAAGCTGGGTGGGGCGGCGCAGCCAGCACCAACTT TTGGGCCTGTCCGGAGACGGATACTGTCATTGTCGCCATGACGCAGATCG CCCCATTTTTCAATGGCCTGGCCGAAAACGTCCGTCCTATCGTGTACCGC AGTCTCCTTGACTGGCACCAGCCTCCACCCATGACGGTCAATCCAAGTAC TCCCGCAGGGCCAAACCAAATGCGGAGCAATGGCGGTCCCTCAGAAAAGC AAGCGGCTAAGCGCGGCATTGGCCCCTTACCGGAAGGGGGAGGGATAGAC ACTCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACA ACAACAACAACAAACAACAACAACAACAACAACAACAACAACAACAAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACCACAAGGACAACAACAACAACAA CCACAAGGACAACAACAACAACAACCACAAGGACAACAACAACAAGAGCA AGAGCAACCGCCGGAGCCACCTAACCAGGAGGGATCTCAGGAGCATCCTC CCACTGATACTACTCCTGATGATGGTGATACCGATGCTGATGCTGACGCT GCAGCCGCGGCTGCTGCTGCTGCCGCGGCTGCTGCTGCTGCTGCTCAACA GAATACACCTTCCAAGAAACCAAAACGAGGTCCACCTCCAAGAGGCACAT GGGGCTCGATAG back to top
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