NO25G01140.1, NO25G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01140.1
Unique NameNO25G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1017
Alignment locationchr25:315946..316962 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:315946..316962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01140.1 vs.
Match: EWM21588.1 (hypothetical protein Naga_100012g24 [Nannochloropsis gaditana])

HSP 1 Score: 355.9 bits (912), Expect = 1.400e-94
Identity = 207/339 (61.06%), Postives = 248/339 (73.16%), Query Frame = 0 
Query:    1 MLIRLPLPLVLHLLVLPFVIVRAYQPPPGPGHHSTPKPRHQSPPRRPQYQPSSSSRQDLISTATTALAGCSSLLFLGSSRTSPAHATDAREAISKVISKVPGYGAPDILYPSFFAGEWKMTREVVGLIIPPEEAGKVDSQDLAQARAQQGEKLVFTIRFLPYNEGEEGAIGGISAPQAPRADVG-NADKAARMVIADRGFNEENLWRARLALAGKSELYQEGVSSRWERTNPNVLTVSFPDGVVREVKVTKRSFESPGEDAFGSSEFCRVADAAADMGVASVPRLSALRVLRRWKRRGGGEEGGIEGLELVKYYPTVSLSADPPAVMTIKARLTLERIR 339
            MLIR  LPL  HLL LP V++  +  PP P    +P P    PP  PQ  P +SSR+D +S+ +      S L FL  +   P+HA+ AREA++K  SK+PGYGAPD LYPSFFAG+W +TREVVGL++PPEE GKV  +DLAQA AQQGEKL + +RFLPY           +  ++PR++       +  +VIADRGFNEE LW+ARLA AGKSELYQEGVSSRW+R NPNVLTVSFPDG VRE+KVTKRSFE+   DAFGSSE+CRVADAAAD G+ASVPRLSALRVLRR+KR G      IEGLELVKYYPTVS SADPP++MT+KAR+ +ER R
Sbjct:    1 MLIRPLLPL-FHLL-LPPVLLAFHPQPPSP----SPPP---FPPASPQ-PPLTSSRRDFLSSVSIIP---SFLCFLFEA-PRPSHASSAREAVAKAASKLPGYGAPDTLYPSFFAGDWMVTREVVGLVVPPEEVGKVSPEDLAQATAQQGEKLKYLVRFLPYE----------ADGRSPRSEASVEGQISTTLVIADRGFNEEQLWKARLAKAGKSELYQEGVSSRWDRGNPNVLTVSFPDGTVREIKVTKRSFENSAVDAFGSSEYCRVADAAADTGIASVPRLSALRVLRRFKRVG----EDIEGLELVKYYPTVSFSADPPSIMTVKARIKMERSR 311
The following BLAST results are available for this feature:
BLAST of NO25G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21588.11.400e-9461.06hypothetical protein Naga_100012g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01140NO25G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01140.1NO25G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01140.1.cds1NO25G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01140.1 ID=NO25G01140.1|Name=NO25G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp
ATGCTTATCAGACTGCCTCTCCCCCTCGTCCTTCATCTCCTTGTCCTGCC
ATTCGTCATCGTCCGTGCATACCAACCACCGCCCGGGCCCGGCCACCACA
GCACACCAAAGCCTCGACACCAGAGCCCGCCTCGCCGCCCCCAGTACCAG
CCAAGCAGCAGCAGCCGCCAAGACCTCATCTCCACTGCCACGACCGCTCT
CGCTGGTTGCTCCTCCCTCCTCTTTCTCGGCTCATCCCGTACATCTCCTG
CCCATGCTACGGATGCCCGCGAGGCCATCTCCAAAGTTATCTCCAAAGTC
CCCGGGTATGGGGCTCCTGATATATTGTATCCCTCCTTTTTTGCTGGCGA
GTGGAAAATGACAAGGGAAGTGGTCGGCTTAATCATTCCCCCTGAAGAAG
CAGGCAAAGTCGACTCGCAGGATTTGGCGCAAGCCAGGGCGCAGCAAGGC
GAGAAACTTGTCTTCACCATCCGCTTTCTACCCTACAATGAGGGTGAGGA
AGGTGCTATTGGTGGTATCTCTGCACCTCAAGCTCCTCGGGCCGATGTGG
GAAACGCGGACAAGGCCGCAAGAATGGTAATTGCTGATAGGGGGTTCAAT
GAAGAGAATTTATGGAGGGCCCGTTTAGCCCTAGCGGGAAAGAGTGAGCT
GTACCAGGAAGGGGTGTCCAGTCGCTGGGAGCGAACAAATCCCAATGTTC
TTACAGTATCCTTTCCGGATGGTGTGGTTAGAGAGGTGAAAGTGACGAAG
AGGTCGTTTGAATCCCCCGGAGAGGATGCCTTCGGGTCTTCAGAATTTTG
TCGCGTGGCTGACGCGGCGGCTGACATGGGGGTGGCGTCTGTTCCCCGGT
TGAGTGCTTTGAGGGTGCTGAGGAGGTGGAAGAGGAGAGGAGGAGGAGAG
GAGGGAGGAATTGAGGGTTTGGAGCTGGTGAAATACTATCCAACTGTGAG
TTTAAGTGCGGATCCACCGGCGGTGATGACCATTAAAGCACGGTTGACGC
TGGAAAGGATTAGATAA
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protein sequence of NO25G01140.1

>NO25G01140.1-protein ID=NO25G01140.1-protein|Name=NO25G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MLIRLPLPLVLHLLVLPFVIVRAYQPPPGPGHHSTPKPRHQSPPRRPQYQ
PSSSSRQDLISTATTALAGCSSLLFLGSSRTSPAHATDAREAISKVISKV
PGYGAPDILYPSFFAGEWKMTREVVGLIIPPEEAGKVDSQDLAQARAQQG
EKLVFTIRFLPYNEGEEGAIGGISAPQAPRADVGNADKAARMVIADRGFN
EENLWRARLALAGKSELYQEGVSSRWERTNPNVLTVSFPDGVVREVKVTK
RSFESPGEDAFGSSEFCRVADAAADMGVASVPRLSALRVLRRWKRRGGGE
EGGIEGLELVKYYPTVSLSADPPAVMTIKARLTLERIR*
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mRNA from alignment at chr25:315946..316962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01140.1 ID=NO25G01140.1|Name=NO25G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp|location=Sequence derived from alignment at chr25:315946..316962+ (Nannochloropsis oceanica)
ATGCTTATCAGACTGCCTCTCCCCCTCGTCCTTCATCTCCTTGTCCTGCC
ATTCGTCATCGTCCGTGCATACCAACCACCGCCCGGGCCCGGCCACCACA
GCACACCAAAGCCTCGACACCAGAGCCCGCCTCGCCGCCCCCAGTACCAG
CCAAGCAGCAGCAGCCGCCAAGACCTCATCTCCACTGCCACGACCGCTCT
CGCTGGTTGCTCCTCCCTCCTCTTTCTCGGCTCATCCCGTACATCTCCTG
CCCATGCTACGGATGCCCGCGAGGCCATCTCCAAAGTTATCTCCAAAGTC
CCCGGGTATGGGGCTCCTGATATATTGTATCCCTCCTTTTTTGCTGGCGA
GTGGAAAATGACAAGGGAAGTGGTCGGCTTAATCATTCCCCCTGAAGAAG
CAGGCAAAGTCGACTCGCAGGATTTGGCGCAAGCCAGGGCGCAGCAAGGC
GAGAAACTTGTCTTCACCATCCGCTTTCTACCCTACAATGAGGGTGAGGA
AGGTGCTATTGGTGGTATCTCTGCACCTCAAGCTCCTCGGGCCGATGTGG
GAAACGCGGACAAGGCCGCAAGAATGGTAATTGCTGATAGGGGGTTCAAT
GAAGAGAATTTATGGAGGGCCCGTTTAGCCCTAGCGGGAAAGAGTGAGCT
GTACCAGGAAGGGGTGTCCAGTCGCTGGGAGCGAACAAATCCCAATGTTC
TTACAGTATCCTTTCCGGATGGTGTGGTTAGAGAGGTGAAAGTGACGAAG
AGGTCGTTTGAATCCCCCGGAGAGGATGCCTTCGGGTCTTCAGAATTTTG
TCGCGTGGCTGACGCGGCGGCTGACATGGGGGTGGCGTCTGTTCCCCGGT
TGAGTGCTTTGAGGGTGCTGAGGAGGTGGAAGAGGAGAGGAGGAGGAGAG
GAGGGAGGAATTGAGGGTTTGGAGCTGGTGAAATACTATCCAACTGTGAG
TTTAAGTGCGGATCCACCGGCGGTGATGACCATTAAAGCACGGTTGACGC
TGGAAAGGATTAGATAA
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Coding sequence (CDS) from alignment at chr25:315946..316962+

>NO25G01140.1 ID=NO25G01140.1|Name=NO25G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr25:315946..316962+ (Nannochloropsis oceanica)
ATGCTTATCAGACTGCCTCTCCCCCTCGTCCTTCATCTCCTTGTCCTGCC
ATTCGTCATCGTCCGTGCATACCAACCACCGCCCGGGCCCGGCCACCACA
GCACACCAAAGCCTCGACACCAGAGCCCGCCTCGCCGCCCCCAGTACCAG
CCAAGCAGCAGCAGCCGCCAAGACCTCATCTCCACTGCCACGACCGCTCT
CGCTGGTTGCTCCTCCCTCCTCTTTCTCGGCTCATCCCGTACATCTCCTG
CCCATGCTACGGATGCCCGCGAGGCCATCTCCAAAGTTATCTCCAAAGTC
CCCGGGTATGGGGCTCCTGATATATTGTATCCCTCCTTTTTTGCTGGCGA
GTGGAAAATGACAAGGGAAGTGGTCGGCTTAATCATTCCCCCTGAAGAAG
CAGGCAAAGTCGACTCGCAGGATTTGGCGCAAGCCAGGGCGCAGCAAGGC
GAGAAACTTGTCTTCACCATCCGCTTTCTACCCTACAATGAGGGTGAGGA
AGGTGCTATTGGTGGTATCTCTGCACCTCAAGCTCCTCGGGCCGATGTGG
GAAACGCGGACAAGGCCGCAAGAATGGTAATTGCTGATAGGGGGTTCAAT
GAAGAGAATTTATGGAGGGCCCGTTTAGCCCTAGCGGGAAAGAGTGAGCT
GTACCAGGAAGGGGTGTCCAGTCGCTGGGAGCGAACAAATCCCAATGTTC
TTACAGTATCCTTTCCGGATGGTGTGGTTAGAGAGGTGAAAGTGACGAAG
AGGTCGTTTGAATCCCCCGGAGAGGATGCCTTCGGGTCTTCAGAATTTTG
TCGCGTGGCTGACGCGGCGGCTGACATGGGGGTGGCGTCTGTTCCCCGGT
TGAGTGCTTTGAGGGTGCTGAGGAGGTGGAAGAGGAGAGGAGGAGGAGAG
GAGGGAGGAATTGAGGGTTTGGAGCTGGTGAAATACTATCCAACTGTGAG
TTTAAGTGCGGATCCACCGGCGGTGATGACCATTAAAGCACGGTTGACGC
TGGAAAGGATTAGATAA
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Synonyms
Publications