NO25G01120.1, NO25G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01120.1
Unique NameNO25G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr25:309468..310984 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:309468..310984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01120.1 vs.
Match: XP_005853850.1 (hypothetical protein NGA_0345402 [Nannochloropsis gaditana CCMP526]; EKU22508.1 hypothetical protein NGA_0345402 [Nannochloropsis gaditana CCMP526]; EWM21647.1 Haloacid dehalogenase-like hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 397.1 bits (1019), Expect = 5.500e-107
Identity = 208/309 (67.31%), Postives = 251/309 (81.23%), Query Frame = 0 
Query:   32 LLLVLIPAMLMTHAFLLPASVLSSSKSISASRERQQQPRGGAAMRLYTGGPAASQDWALIFDCDGVILESESLHREAYNAMFREFQISYHWNEEYYDELQNKIGGGIPKMRYYFGEHGWPSSSLGSSPPSSSEDKEKMLNTLQDRKTDIYKDMIRGGTAQVRPGVLRLIKEARALKEGGREGGAPKLAICSASTKTSCLFVLDNLLGEEVLQNFDLILAGDDVKNRKPDPEIYSMASERLGIPASRSVVIEDSLIGLQAALGAKMPCIITSTPSTRGQDFTAAHAVFTELGDGDGIQVTAKQLRDIALG 341
            LLL+++ A+ ++ AF+ P   LSS    + S +  Q P        +     AS+DWALIFDCDGVILESESLHREAYN +FREF+I Y W+EEYYD+LQNK+GGGIPKMRY+FGE+GWP+S+LG++ P+  + ++ MLN LQ+RKTDIYKDMIRGGTAQVRPGVLRLI+EAR L E       PKLAICSASTK+SCLFVLDNLL  +VLQ+FDLILAGDDVK+RKPDPEIY +ASERL IPASRSVVIEDSLIGLQAALGA+MPC+IT T ST+ QDF+ A AVF+ELGDG+ +QVTA++L +IALG
Sbjct:    9 LLLIVVSAVALSQAFVSP---LSSVYKPATSTQPGQLPHRTVT---WLSAGRASRDWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAA-PTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGE-----DRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELMEIALG 305
The following BLAST results are available for this feature:
BLAST of NO25G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853850.15.500e-10767.31hypothetical protein NGA_0345402 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01120NO25G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01120.1NO25G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01120.1.cds1NO25G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01120.1.cds2NO25G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01120.1.cds3NO25G01120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01120.1 ID=NO25G01120.1|Name=NO25G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
ACACACAGGCAGGAGCAGCTGGGGAGTCCCAGGCTGCCCACTTTCACGGC
CCACGGTTGCTTACGCTTGCTCTTCCTCCGCTTTATGCAAGTCAAGCTCG
CTCTCAGATCTAAGCCAAGCAGCACCATTACCATACGACCCTTTAAAGAC
AGCATGCGACCCTTTGGCAACGCCCTCTTACTCCTCGTCCTCATCCCTGC
CATGCTTATGACGCATGCCTTTCTCTTGCCAGCGTCTGTCTTGTCCTCCT
CCAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCAGCAGCCGCGAGGAGGA
GCTGCGATGAGACTCTATACCGGTGGTCCTGCCGCTAGCCAAGACTGGGC
GTTAATTTTTGACTGCGACGGTGTCATTCTTGAGTCCGAATCCCTTCATC
GTGAAGCCTACAATGCTATGTTCCGTGAATTTCAAATTTCCTATCACTGG
AACGAAGAGTACTACGACGAGCTACAAAATAAAATCGGAGGCGGCATTCC
TAAGATGCGCTATTACTTTGGAGAACACGGCTGGCCATCTTCCTCCCTCG
GTTCCTCTCCCCCTTCCTCTTCGGAGGATAAAGAAAAGATGTTGAACACA
TTGCAGGATCGGAAAACTGATATATACAAGGACATGATAAGGGGTGGTAC
GGCTCAGGTTCGCCCTGGTGTGCTACGATTGATCAAGGAGGCGAGAGCAT
TGAAGGAGGGAGGGAGGGAGGGAGGGGCTCCGAAGCTGGCGATTTGCTCG
GCATCGACCAAGACTAGTTGTTTGTTTGTACTGGATAACTTGTTGGGGGA
GGAAGTATTGCAGAATTTTGATTTGATTTTGGCGGGGGATGACGTCAAGA
ACCGGAAGCCTGACCCGGAGATTTATAGCATGGCAAGCGAGAGGCTCGGC
ATCCCCGCCAGCCGCTCCGTCGTCATCGAAGACAGCCTCATTGGGCTTCA
AGCTGCGCTAGGTGCCAAAATGCCGTGCATCATCACGTCCACACCTTCGA
CCAGGGGCCAGGATTTCACGGCGGCTCACGCTGTGTTTACTGAGCTAGGG
GACGGAGACGGCATTCAGGTGACGGCCAAACAATTGAGGGATATAGCGCT
GGGCAACTCAAAAGGGTTTGGAAAGTAGAAGCAGATGTCTTGAACAGATC
GATGAAGAAAAAGTGAAATGAAAAACTGAGAGTAGATGGGGTG
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protein sequence of NO25G01120.1

>NO25G01120.1-protein ID=NO25G01120.1-protein|Name=NO25G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MQVKLALRSKPSSTITIRPFKDSMRPFGNALLLLVLIPAMLMTHAFLLPA
SVLSSSKSISASRERQQQPRGGAAMRLYTGGPAASQDWALIFDCDGVILE
SESLHREAYNAMFREFQISYHWNEEYYDELQNKIGGGIPKMRYYFGEHGW
PSSSLGSSPPSSSEDKEKMLNTLQDRKTDIYKDMIRGGTAQVRPGVLRLI
KEARALKEGGREGGAPKLAICSASTKTSCLFVLDNLLGEEVLQNFDLILA
GDDVKNRKPDPEIYSMASERLGIPASRSVVIEDSLIGLQAALGAKMPCII
TSTPSTRGQDFTAAHAVFTELGDGDGIQVTAKQLRDIALGNSKGFGK*
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mRNA from alignment at chr25:309468..310984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01120.1 ID=NO25G01120.1|Name=NO25G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at chr25:309468..310984+ (Nannochloropsis oceanica)
ACACACAGGCAGGAGCAGCTGGGGAGTCCCAGGCTGCCCACTTTCACGGC
CCACGGTTGCTTACGCTTGCTCTTCCTCCGCTTTATGCAAGTCAAGCTCG
CTCTCAGATCTAAGCCAAGCAGCACCATTACCATACGACCCTTTAAAGAC
AGCATGCGACCCTTTGGCAACGCCCTCTTACTCCTCGTCCTCATCCCTGC
CATGCTTATGACGCATGCCTTTCTCTTGCCAGCGTCTGTCTTGTCCTCCT
CCAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCAGCAGCCGCGAGGAGGA
GCTGCGATGAGACTCTATACCGGTGGTCCTGCCGCTAGCCAAGACTGGGC
GTTAATTTTTGACTGCGACGGTGTCATTCTTGAGGCACGTACATGATGCT
TATGGAATCCTGCCGCTATAGTCAATTTCCATCGTATCCTGCCATCGTGC
CCACATTCATTTCTCCCTTTCTCCCTCCCCTTCCCTCCCCTACCTTCTTT
TCTTAGTCCGAATCCCTTCATCGTGAAGCCTACAATGCTATGTTCCGTGA
ATTTCAAATTTCCTATCACTGGAACGAAGAGTACTACGACGAGCTACAAA
ATAAAATCGGAGGCGGCATTCCTAAGATGCGCTATTACTTTGGAGAACAC
GGCTGGCCATCTTCCTCCCTCGGTTCCTCTCCCCCTTCCTCTTCGGAGGA
TAAAGAAAAGATGTTGAACACATTGCAGGATCGGAAAACTGATATATACA
AGGACATGATAAGGGGTGGTACGGCTCAGGTTCGCCCTGGTGTGCTACGA
TTGATCAAGGAGGCGAGAGCATTGAAGGAGGGAGGGAGGGAGGGAGGGGC
TCCGAAGCTGGCGATTTGCTCGGCATCGACCAAGACTAGTTGTTTGTTTG
TACTGGATAACTTGTTGGGGGAGGAAGTATTGCAGAATTTTGATTTGATT
TTGGCGGGGGATGACGTCAAGAACCGGAAGCCTGACCCGGAGATTTATAG
CATGGCAAGCGAGAGGTAGGAAGGGAGGGTGAGGTGGGAGGGAAGGAGGA
GTAAAATCGGGGGCCAAAGGGATTTAAATGGATCTATGCGGATATGTGAT
ATATCTCTGTATGCTTTGTTGTGCGATACAGTCTACATATGACTCTTTCC
GGTAAGCGGGCGTACGTCTTTTTCCTTTGCTTACGCTCCCTTCCACGCTT
CATTCCCCCTGTAATAGGCTCGGCATCCCCGCCAGCCGCTCCGTCGTCAT
CGAAGACAGCCTCATTGGGCTTCAAGCTGCGCTAGGTGCCAAAATGCCGT
GCATCATCACGTCCACACCTTCGACCAGGGGCCAGGATTTCACGGCGGCT
CACGCTGTGTTTACTGAGCTAGGGGACGGAGACGGCATTCAGGTGACGGC
CAAACAATTGAGGGATATAGCGCTGGGCAACTCAAAAGGGTTTGGAAAGT
AGAAGCAGATGTCTTGAACAGATCGATGAAGAAAAAGTGAAATGAAAAAC
TGAGAGTAGATGGGGTG
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Coding sequence (CDS) from alignment at chr25:309468..310984+

>NO25G01120.1 ID=NO25G01120.1|Name=NO25G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr25:309468..310984+ (Nannochloropsis oceanica)
ATGCAAGTCAAGCTCGCTCTCAGATCTAAGCCAAGCAGCACCATTACCAT
ACGACCCTTTAAAGACAGCATGCGACCCTTTGGCAACGCCCTCTTACTCC
TCGTCCTCATCCCTGCCATGCTTATGACGCATGCCTTTCTCTTGCCAGCG
TCTGTCTTGTCCTCCTCCAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCA
GCAGCCGCGAGGAGGAGCTGCGATGAGACTCTATACCGGTGGTCCTGCCG
CTAGCCAAGACTGGGCGTTAATTTTTGACTGCGACGGTGTCATTCTTGAG
TCCGAATCCCTTCATCGTGAAGCCTACAATGCTATGTTCCGTGAATTTCA
AATTTCCTATCACTGGAACGAAGAGTACTACGACGAGCTACAAAATAAAA
TCGGAGGCGGCATTCCTAAGATGCGCTATTACTTTGGAGAACACGGCTGG
CCATCTTCCTCCCTCGGTTCCTCTCCCCCTTCCTCTTCGGAGGATAAAGA
AAAGATGTTGAACACATTGCAGGATCGGAAAACTGATATATACAAGGACA
TGATAAGGGGTGGTACGGCTCAGGTTCGCCCTGGTGTGCTACGATTGATC
AAGGAGGCGAGAGCATTGAAGGAGGGAGGGAGGGAGGGAGGGGCTCCGAA
GCTGGCGATTTGCTCGGCATCGACCAAGACTAGTTGTTTGTTTGTACTGG
ATAACTTGTTGGGGGAGGAAGTATTGCAGAATTTTGATTTGATTTTGGCG
GGGGATGACGTCAAGAACCGGAAGCCTGACCCGGAGATTTATAGCATGGC
AAGCGAGAGGCTCGGCATCCCCGCCAGCCGCTCCGTCGTCATCGAAGACA
GCCTCATTGGGCTTCAAGCTGCGCTAGGTGCCAAAATGCCGTGCATCATC
ACGTCCACACCTTCGACCAGGGGCCAGGATTTCACGGCGGCTCACGCTGT
GTTTACTGAGCTAGGGGACGGAGACGGCATTCAGGTGACGGCCAAACAAT
TGAGGGATATAGCGCTGGGCAACTCAAAAGGGTTTGGAAAGTAG
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Synonyms
Publications