NO25G01110.1, NO25G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01110.1
Unique NameNO25G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr25:307278..309270 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:307278..309270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01110.1 vs.
Match: EWM21650.1 (fad-dependent pyridine nucleotide-disulfide oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 583.2 bits (1502), Expect = 9.200e-163
Identity = 339/568 (59.68%), Postives = 400/568 (70.42%), Query Frame = 0 
Query:   21 GKTRSTRRSLPLLLLCFLAFLGPAPASAF--LRGLSPNSKSNSVSRRCLAARRVVMSGSSSSSNSRPHVVVGGAGFGGLYSALRLAELSRTS-HGPPSIDITLVDRHDRFVFLPLLYELAVGDAGLEEVAPSFKALLASTGIRFVQGEIENVDIKGKTVMLMA---AAEVDEEGMEGGKERSVSTDAAIEDVEQQQEAVIAPRTLSYDKLVLALGSEPILPPPSSS-------SDQLHQVMPFYRLEDAQALRERLSLLNLDTTFSSPPPSSSSSSSPSLFRVVIVGGGYSGVELAANLAARLGRDRGKVTLIDRGYQILGGSPAQVRANAGKKLEEEGVEVMLGVDVLKVSKERVVVKDRARASAAGARAANGMEGGEGEGKEEGEDEATIILAADLVVWTAGAKVSRVIQSIEGLDKDARGKIITDQGLRAGGSNGDIYVLGDSAAVRGYRGGGPAGSEGEGEKVLPSTAQVAFQESEVVAWNVWSSVTPSAPGPLVFQYTPLGEMLTLGPLDGAISSLQGMINLEGPTASLARRLVYVMRMPTGPQRLKAAKGWVKGRTEKLKGA 576
            G+T S   +    L   +AFL     +AF  LR +  ++++ +    C       MS  SSSS  +P VVV G GFGGLYSALRL+ELSR S + PPSIDITLVDRHDRFVFLPLLYELA+GDA  EEVAP F++LLASTGIRFVQGE+E +D+ GK V + +   A EV E  +E     S                    ++L+YDKLVLALGSEP+LPP +S        S     VMPFY L DA ALR +L  ++             + SSP+LFR V+VGGGYSGVELAANLA RLGRD+G+VTL++RGYQILG SP  VRA+AGK+LEEEGVEVMLGVDV++V   RVVV+DRA  +        G EG EG G   G  E  ++L ADLVVWTAGA+VS V+ ++EGL+KD RGK++TD GLRA GS GD+YV+GD+AAV GYRGGGP GS GE E+VLPSTAQVAFQESEV AWN+WSS+TP APGPL FQYTPLGEMLTLGP D  IS LQGM NLEGP+ASLARRLVY+MRMPTG QRLKAAK W KGRT K+KGA
Sbjct:   23 GRTHSRAGACTSFLASVVAFLLADSGTAFMPLRVIKSHTRAVTTPSIC-------MSIESSSSKVKPQVVVAGGGFGGLYSALRLSELSRPSRYAPPSIDITLVDRHDRFVFLPLLYELAMGDANEEEVAPRFESLLASTGIRFVQGEVEAIDLAGKCVQVQSQGEATEVSESAVEAPSSGS-------------------SKSLAYDKLVLALGSEPMLPPAASLPLSEGSLSPSPSSVMPFYTLRDAHALRRQLMRID-------------ALSSPTLFRTVVVGGGYSGVELAANLATRLGRDKGRVTLVERGYQILGNSPMPVRASAGKRLEEEGVEVMLGVDVVEVDGARVVVRDRAAET-------QGKEGAEGAGG--GGREGEVVLPADLVVWTAGARVSPVVGAMEGLEKDGRGKLVTDGGLRALGSGGDVYVVGDNAAVMGYRGGGPPGSVGEKEQVLPSTAQVAFQESEVAAWNLWSSLTPGAPGPLRFQYTPLGEMLTLGPADATISGLQGMFNLEGPSASLARRLVYIMRMPTGSQRLKAAKAWAKGRTAKVKGA 542
The following BLAST results are available for this feature:
BLAST of NO25G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21650.19.200e-16359.68fad-dependent pyridine nucleotide-disulfide oxidor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01110NO25G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01110.1NO25G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01110.1.cds1NO25G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01110.1.cds2NO25G01110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01110.1 ID=NO25G01110.1|Name=NO25G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp
ATGGCAATATCCTCTATAAACCGCCAGCCGGCGACGGGGGCATCTTGTAA
CAGCACCAGTGGCAAAACGCGCAGCACACGACGCTCTTTGCCCCTTCTCC
TCCTCTGTTTCCTGGCCTTTCTCGGTCCCGCCCCCGCCTCCGCTTTCCTC
CGTGGTCTCAGTCCAAATTCCAAGAGCAACAGCGTGAGCAGGAGATGCTT
GGCAGCCCGGCGCGTCGTCATGTCGGGCTCGTCTTCCTCGTCAAACTCCC
GCCCGCACGTCGTCGTCGGTGGCGCGGGTTTCGGGGGGCTTTACAGCGCC
CTGCGTTTAGCCGAACTTTCTCGCACCTCTCATGGGCCTCCGTCTATCGA
CATTACCCTGGTAGATCGGCATGATCGATTTGTGTTTTTGCCGTTGTTGT
ACGAGTTGGCGGTGGGAGATGCAGGCTTGGAGGAAGTAGCGCCGTCGTTT
AAGGCCTTGTTGGCATCCACAGGGATAAGATTCGTGCAGGGGGAGATAGA
GAATGTCGACATCAAAGGGAAAACTGTAATGCTGATGGCGGCTGCGGAGG
TGGACGAGGAAGGGATGGAGGGAGGGAAGGAGAGATCGGTTTCGACAGAC
GCTGCAATTGAAGATGTAGAGCAGCAGCAGGAGGCGGTGATCGCCCCTCG
CACCCTTTCTTACGACAAGCTCGTCCTAGCCCTCGGATCAGAACCGATCC
TCCCTCCTCCCTCCTCCTCTTCAGATCAACTGCATCAAGTCATGCCCTTT
TACCGCCTCGAAGACGCCCAAGCCCTCCGGGAACGCTTATCCCTCCTCAA
TCTTGACACAACCTTTTCCTCCCCTCCGCCCTCGTCGTCGTCCTCGTCCT
CGCCCTCCCTCTTCCGGGTCGTCATCGTCGGGGGGGGCTACTCTGGAGTT
GAGCTCGCGGCGAATCTTGCGGCAAGGTTAGGGAGGGACCGAGGGAAAGT
CACATTGATAGACAGAGGGTATCAAATCTTGGGAGGAAGCCCTGCACAGG
TGCGAGCGAATGCGGGGAAGAAGTTGGAGGAGGAAGGTGTGGAAGTGATG
CTTGGGGTGGATGTGTTGAAAGTAAGTAAGGAGAGGGTGGTCGTCAAGGA
CCGGGCCCGTGCCTCTGCAGCTGGAGCGAGAGCAGCGAATGGGATGGAGG
GAGGGGAGGGGGAAGGGAAGGAGGAAGGGGAGGATGAGGCCACCATAATC
TTAGCTGCGGATTTGGTGGTGTGGACAGCAGGCGCAAAGGTCTCTCGAGT
CATCCAGTCTATCGAAGGCTTGGATAAAGACGCGCGAGGGAAAATCATTA
CAGATCAGGGCTTGAGAGCAGGTGGTTCTAATGGTGATATCTATGTCCTT
GGTGACAGTGCCGCTGTACGTGGATATCGTGGGGGAGGCCCAGCTGGAAG
TGAGGGTGAGGGAGAAAAAGTCTTGCCTTCTACTGCACAAGTGGCTTTTC
AGGAGTCAGAAGTGGTGGCATGGAATGTTTGGTCGAGTGTCACGCCCTCT
GCGCCTGGCCCGCTTGTGTTTCAATATACCCCCTTGGGCGAGATGCTGAC
CTTGGGGCCTCTCGATGGCGCAATTTCCTCACTGCAGGGGATGATTAATC
TGGAGGGCCCCACCGCGAGCTTGGCGAGGAGGTTAGTGTATGTCATGCGG
ATGCCCACGGGACCACAGCGGCTCAAAGCTGCGAAGGGATGGGTGAAGGG
ACGGACGGAGAAATTGAAGGGCGCGGTAAGGGGGGTGGCCGCCGGAAAGG
CGGAGCAGTAG
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protein sequence of NO25G01110.1

>NO25G01110.1-protein ID=NO25G01110.1-protein|Name=NO25G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MAISSINRQPATGASCNSTSGKTRSTRRSLPLLLLCFLAFLGPAPASAFL
RGLSPNSKSNSVSRRCLAARRVVMSGSSSSSNSRPHVVVGGAGFGGLYSA
LRLAELSRTSHGPPSIDITLVDRHDRFVFLPLLYELAVGDAGLEEVAPSF
KALLASTGIRFVQGEIENVDIKGKTVMLMAAAEVDEEGMEGGKERSVSTD
AAIEDVEQQQEAVIAPRTLSYDKLVLALGSEPILPPPSSSSDQLHQVMPF
YRLEDAQALRERLSLLNLDTTFSSPPPSSSSSSSPSLFRVVIVGGGYSGV
ELAANLAARLGRDRGKVTLIDRGYQILGGSPAQVRANAGKKLEEEGVEVM
LGVDVLKVSKERVVVKDRARASAAGARAANGMEGGEGEGKEEGEDEATII
LAADLVVWTAGAKVSRVIQSIEGLDKDARGKIITDQGLRAGGSNGDIYVL
GDSAAVRGYRGGGPAGSEGEGEKVLPSTAQVAFQESEVVAWNVWSSVTPS
APGPLVFQYTPLGEMLTLGPLDGAISSLQGMINLEGPTASLARRLVYVMR
MPTGPQRLKAAKGWVKGRTEKLKGAVRGVAAGKAEQ*
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mRNA from alignment at chr25:307278..309270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01110.1 ID=NO25G01110.1|Name=NO25G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at chr25:307278..309270- (Nannochloropsis oceanica)
ATGGCAATATCCTCTATAAACCGCCAGCCGGCGACGGGGGCATCTTGTAA
CAGCACCAGTGGCAAAACGCGCAGCACACGACGCTCTTTGCCCCTTCTCC
TCCTCTGTTTCCTGGCCTTTCTCGGTCCCGCCCCCGCCTCCGCTTTCCTC
CGTGGTCTCAGTCCAAATTCCAAGAGCAACAGCGTGAGCAGGAGATGCTT
GGCAGCCCGGCGCGTCGTCATGTCGGGCTCGTCTTCCTCGTCAAACTGTA
AGTGTGGAGTCAAACATGTCCCGCTTACCTGACTCATCCATCATCGGCCC
TAGAAATGACCCCCCGAGCACATCAGCATCATTTGATTGCCAATAAGCAC
ACTTGTCCCTCTATCATGTTTCTGAGTGTGCCATTTAAACGTTTCTGTTC
CCTTCTCCTGCCATTTAACCCAAACTTCCTGACTCATCCCTCCCCCCCTC
GCTCTCCCCCCCTCCCTCCCTCACTCCAGCCCGCCCGCACGTCGTCGTCG
GTGGCGCGGGTTTCGGGGGGCTTTACAGCGCCCTGCGTTTAGCCGAACTT
TCTCGCACCTCTCATGGGCCTCCGTCTATCGACATTACCCTGGTAGATCG
GCATGATCGATTTGTGTTTTTGCCGTTGTTGTACGAGTTGGCGGTGGGAG
ATGCAGGCTTGGAGGAAGTAGCGCCGTCGTTTAAGGCCTTGTTGGCATCC
ACAGGGATAAGATTCGTGCAGGGGGAGATAGAGAATGTCGACATCAAAGG
GAAAACTGTAATGCTGATGGCGGCTGCGGAGGTGGACGAGGAAGGGATGG
AGGGAGGGAAGGAGAGATCGGTTTCGACAGACGCTGCAATTGAAGATGTA
GAGCAGCAGCAGGAGGCGGTGATCGCCCCTCGCACCCTTTCTTACGACAA
GCTCGTCCTAGCCCTCGGATCAGAACCGATCCTCCCTCCTCCCTCCTCCT
CTTCAGATCAACTGCATCAAGTCATGCCCTTTTACCGCCTCGAAGACGCC
CAAGCCCTCCGGGAACGCTTATCCCTCCTCAATCTTGACACAACCTTTTC
CTCCCCTCCGCCCTCGTCGTCGTCCTCGTCCTCGCCCTCCCTCTTCCGGG
TCGTCATCGTCGGGGGGGGCTACTCTGGAGTTGAGCTCGCGGCGAATCTT
GCGGCAAGGTTAGGGAGGGACCGAGGGAAAGTCACATTGATAGACAGAGG
GTATCAAATCTTGGGAGGAAGCCCTGCACAGGTGCGAGCGAATGCGGGGA
AGAAGTTGGAGGAGGAAGGTGTGGAAGTGATGCTTGGGGTGGATGTGTTG
AAAGTAAGTAAGGAGAGGGTGGTCGTCAAGGACCGGGCCCGTGCCTCTGC
AGCTGGAGCGAGAGCAGCGAATGGGATGGAGGGAGGGGAGGGGGAAGGGA
AGGAGGAAGGGGAGGATGAGGCCACCATAATCTTAGCTGCGGATTTGGTG
GTGTGGACAGCAGGCGCAAAGGTCTCTCGAGTCATCCAGTCTATCGAAGG
CTTGGATAAAGACGCGCGAGGGAAAATCATTACAGATCAGGGCTTGAGAG
CAGGTGGTTCTAATGGTGATATCTATGTCCTTGGTGACAGTGCCGCTGTA
CGTGGATATCGTGGGGGAGGCCCAGCTGGAAGTGAGGGTGAGGGAGAAAA
AGTCTTGCCTTCTACTGCACAAGTGGCTTTTCAGGAGTCAGAAGTGGTGG
CATGGAATGTTTGGTCGAGTGTCACGCCCTCTGCGCCTGGCCCGCTTGTG
TTTCAATATACCCCCTTGGGCGAGATGCTGACCTTGGGGCCTCTCGATGG
CGCAATTTCCTCACTGCAGGGGATGATTAATCTGGAGGGCCCCACCGCGA
GCTTGGCGAGGAGGTTAGTGTATGTCATGCGGATGCCCACGGGACCACAG
CGGCTCAAAGCTGCGAAGGGATGGGTGAAGGGACGGACGGAGAAATTGAA
GGGCGCGGTAAGGGGGGTGGCCGCCGGAAAGGCGGAGCAGTAG
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Coding sequence (CDS) from alignment at chr25:307278..309270-

>NO25G01110.1 ID=NO25G01110.1|Name=NO25G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at chr25:307278..309270- (Nannochloropsis oceanica)
ATGGCAATATCCTCTATAAACCGCCAGCCGGCGACGGGGGCATCTTGTAA
CAGCACCAGTGGCAAAACGCGCAGCACACGACGCTCTTTGCCCCTTCTCC
TCCTCTGTTTCCTGGCCTTTCTCGGTCCCGCCCCCGCCTCCGCTTTCCTC
CGTGGTCTCAGTCCAAATTCCAAGAGCAACAGCGTGAGCAGGAGATGCTT
GGCAGCCCGGCGCGTCGTCATGTCGGGCTCGTCTTCCTCGTCAAACTCCC
GCCCGCACGTCGTCGTCGGTGGCGCGGGTTTCGGGGGGCTTTACAGCGCC
CTGCGTTTAGCCGAACTTTCTCGCACCTCTCATGGGCCTCCGTCTATCGA
CATTACCCTGGTAGATCGGCATGATCGATTTGTGTTTTTGCCGTTGTTGT
ACGAGTTGGCGGTGGGAGATGCAGGCTTGGAGGAAGTAGCGCCGTCGTTT
AAGGCCTTGTTGGCATCCACAGGGATAAGATTCGTGCAGGGGGAGATAGA
GAATGTCGACATCAAAGGGAAAACTGTAATGCTGATGGCGGCTGCGGAGG
TGGACGAGGAAGGGATGGAGGGAGGGAAGGAGAGATCGGTTTCGACAGAC
GCTGCAATTGAAGATGTAGAGCAGCAGCAGGAGGCGGTGATCGCCCCTCG
CACCCTTTCTTACGACAAGCTCGTCCTAGCCCTCGGATCAGAACCGATCC
TCCCTCCTCCCTCCTCCTCTTCAGATCAACTGCATCAAGTCATGCCCTTT
TACCGCCTCGAAGACGCCCAAGCCCTCCGGGAACGCTTATCCCTCCTCAA
TCTTGACACAACCTTTTCCTCCCCTCCGCCCTCGTCGTCGTCCTCGTCCT
CGCCCTCCCTCTTCCGGGTCGTCATCGTCGGGGGGGGCTACTCTGGAGTT
GAGCTCGCGGCGAATCTTGCGGCAAGGTTAGGGAGGGACCGAGGGAAAGT
CACATTGATAGACAGAGGGTATCAAATCTTGGGAGGAAGCCCTGCACAGG
TGCGAGCGAATGCGGGGAAGAAGTTGGAGGAGGAAGGTGTGGAAGTGATG
CTTGGGGTGGATGTGTTGAAAGTAAGTAAGGAGAGGGTGGTCGTCAAGGA
CCGGGCCCGTGCCTCTGCAGCTGGAGCGAGAGCAGCGAATGGGATGGAGG
GAGGGGAGGGGGAAGGGAAGGAGGAAGGGGAGGATGAGGCCACCATAATC
TTAGCTGCGGATTTGGTGGTGTGGACAGCAGGCGCAAAGGTCTCTCGAGT
CATCCAGTCTATCGAAGGCTTGGATAAAGACGCGCGAGGGAAAATCATTA
CAGATCAGGGCTTGAGAGCAGGTGGTTCTAATGGTGATATCTATGTCCTT
GGTGACAGTGCCGCTGTACGTGGATATCGTGGGGGAGGCCCAGCTGGAAG
TGAGGGTGAGGGAGAAAAAGTCTTGCCTTCTACTGCACAAGTGGCTTTTC
AGGAGTCAGAAGTGGTGGCATGGAATGTTTGGTCGAGTGTCACGCCCTCT
GCGCCTGGCCCGCTTGTGTTTCAATATACCCCCTTGGGCGAGATGCTGAC
CTTGGGGCCTCTCGATGGCGCAATTTCCTCACTGCAGGGGATGATTAATC
TGGAGGGCCCCACCGCGAGCTTGGCGAGGAGGTTAGTGTATGTCATGCGG
ATGCCCACGGGACCACAGCGGCTCAAAGCTGCGAAGGGATGGGTGAAGGG
ACGGACGGAGAAATTGAAGGGCGCGGTAAGGGGGGTGGCCGCCGGAAAGG
CGGAGCAGTAG
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Synonyms
Publications