NO25G00940.1, NO25G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00940.1
Unique NameNO25G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr25:266464..267639 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:266464..267639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00940.1 vs.
Match: EWM21638.1 (Sulfotransferase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 582.8 bits (1501), Expect = 8.000e-163
Identity = 281/382 (73.56%), Postives = 323/382 (84.55%), Query Frame = 0 
Query:    1 MLPRTCASPGRHGGGSSRWNSNISGGNASSWW-GLSLAKWAWISACVGLLGLSLNFWADTVWVGVDRGGGSVTLSHAIRHSLRLTSKRPLVGTKDRPLLIVGTHHKTGTALMALVLREAFSVHKSLTGGKSSGVMMGFFGKAEKAGAPYAFYYCDQLYADTWNKSDSSSTEHLPKLVDNHQFFNGHYKFVHLVRDPVELVISAYLYHHGGPPDWQEVWLYEKHPLSNYKTVMTNSSCDPKGRTEMSWYDVLRCLNQKEGLLAEALFQTYFGALPSMVAAVKHIHGDHQHARVLQLGLEEFQLNFDGTVSRMFEFLGFGKKEVGKIVEGCAPFDLQRQSQGEKERNEHVTAGKFDKGKLREIMVAYDDPVFKEARRVLGYPKE 382
            MLPRT +SPGR+G   SR NS     N  +W  G+++ KW W+ AC+ LL LSL+FWA+TVWVGVD GGG++ LS AIR +LRL +KRPLVGTK++PLLIVGTHHKTGTALMALVLREAFSVHK +TGGK SGVMMG+FG  E   AP+AFYYCD LY+DTWNK+DSSS++HLPKLVDNHQFF GHYKFVHLVRDP+ELVISAYLYHH GPPDWQEVWLYE+HPLS+Y+T++ NSSCDP  R  MSW+D+LRCLNQKEGL+AEALFQT+FGA+PSMVAAV+HI GD +HA+VLQLGLEEFQ  FD TV RMFEFLGF  + V  IV GCAPFDL+RQS GEKERNEHVT GKFDK KLRE+M  Y+DPVF +ARRVLGY  E
Sbjct:   14 MLPRTYSSPGRYG---SRRNSI----NDRAWLRGVTVVKWVWLVACILLLCLSLHFWAETVWVGVDEGGGTIPLSQAIRQTLRLATKRPLVGTKEKPLLIVGTHHKTGTALMALVLREAFSVHKKMTGGKPSGVMMGYFGNPETMDAPFAFYYCDHLYSDTWNKTDSSSSDHLPKLVDNHQFFKGHYKFVHLVRDPMELVISAYLYHHAGPPDWQEVWLYEQHPLSSYQTILNNSSCDPGTRLTMSWFDLLRCLNQKEGLMAEALFQTHFGAVPSMVAAVQHIQGDQKHAQVLQLGLEEFQSGFDETVRRMFEFLGFRPRVVESIVRGCAPFDLRRQSSGEKERNEHVTTGKFDKEKLREMMRKYEDPVFLQARRVLGYADE 388
The following BLAST results are available for this feature:
BLAST of NO25G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21638.18.000e-16373.56Sulfotransferase domain protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00940NO25G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00940.1NO25G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00940.1.cds1NO25G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00940.1 ID=NO25G00940.1|Name=NO25G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGCTGCCTCGGACGTGCGCGTCTCCAGGCCGGCATGGTGGAGGCAGCAG
CAGATGGAACAGCAACATCAGCGGCGGCAATGCTTCGTCCTGGTGGGGCC
TCTCATTAGCAAAGTGGGCATGGATCTCTGCCTGCGTGGGACTGCTCGGT
CTCTCTCTGAACTTTTGGGCCGATACCGTGTGGGTGGGGGTGGACAGAGG
CGGGGGAAGCGTCACCCTAAGTCATGCCATTCGTCACTCCCTCCGTCTGA
CAAGCAAGCGCCCCCTTGTTGGCACTAAAGACAGACCTTTGCTCATTGTC
GGGACTCATCACAAGACTGGCACGGCACTAATGGCCTTGGTCCTCCGCGA
GGCGTTCAGCGTGCACAAGAGCTTGACAGGCGGGAAGAGTTCCGGGGTGA
TGATGGGTTTCTTTGGGAAAGCCGAAAAGGCCGGAGCGCCGTATGCGTTC
TACTACTGCGATCAACTCTATGCAGACACATGGAACAAAAGTGATTCGAG
TTCGACTGAGCATTTACCGAAACTGGTGGACAACCATCAGTTCTTCAACG
GGCATTATAAATTCGTCCATCTCGTGCGGGATCCTGTCGAGTTGGTAATT
TCGGCTTACCTGTACCACCATGGCGGCCCCCCCGACTGGCAAGAAGTATG
GTTGTACGAGAAACATCCTTTGAGCAACTACAAGACAGTGATGACGAACT
CGAGTTGCGACCCAAAAGGACGCACAGAAATGTCCTGGTATGACGTCCTC
CGGTGCTTGAACCAGAAGGAGGGGTTGCTCGCAGAAGCGTTGTTTCAGAC
GTATTTTGGGGCTCTGCCCTCTATGGTAGCAGCCGTGAAGCACATCCACG
GTGATCACCAGCATGCCCGCGTCCTACAGTTGGGGCTGGAAGAGTTTCAA
TTAAATTTTGACGGGACCGTTTCGAGAATGTTCGAATTTTTGGGTTTTGG
GAAGAAGGAGGTGGGAAAGATTGTGGAGGGTTGTGCGCCGTTCGATTTGC
AGAGGCAGAGTCAGGGAGAGAAAGAGAGAAACGAGCACGTGACAGCTGGC
AAGTTTGATAAAGGGAAATTAAGGGAGATCATGGTGGCATACGACGACCC
GGTGTTTAAGGAGGCGAGGAGGGTTCTGGGGTACCCTAAGGAGGAGAGCG
TAGTGAGGACGCGACCTGCGCACTAG
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protein sequence of NO25G00940.1

>NO25G00940.1-protein ID=NO25G00940.1-protein|Name=NO25G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MLPRTCASPGRHGGGSSRWNSNISGGNASSWWGLSLAKWAWISACVGLLG
LSLNFWADTVWVGVDRGGGSVTLSHAIRHSLRLTSKRPLVGTKDRPLLIV
GTHHKTGTALMALVLREAFSVHKSLTGGKSSGVMMGFFGKAEKAGAPYAF
YYCDQLYADTWNKSDSSSTEHLPKLVDNHQFFNGHYKFVHLVRDPVELVI
SAYLYHHGGPPDWQEVWLYEKHPLSNYKTVMTNSSCDPKGRTEMSWYDVL
RCLNQKEGLLAEALFQTYFGALPSMVAAVKHIHGDHQHARVLQLGLEEFQ
LNFDGTVSRMFEFLGFGKKEVGKIVEGCAPFDLQRQSQGEKERNEHVTAG
KFDKGKLREIMVAYDDPVFKEARRVLGYPKEESVVRTRPAH*
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mRNA from alignment at chr25:266464..267639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00940.1 ID=NO25G00940.1|Name=NO25G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp|location=Sequence derived from alignment at chr25:266464..267639- (Nannochloropsis oceanica)
ATGCTGCCTCGGACGTGCGCGTCTCCAGGCCGGCATGGTGGAGGCAGCAG
CAGATGGAACAGCAACATCAGCGGCGGCAATGCTTCGTCCTGGTGGGGCC
TCTCATTAGCAAAGTGGGCATGGATCTCTGCCTGCGTGGGACTGCTCGGT
CTCTCTCTGAACTTTTGGGCCGATACCGTGTGGGTGGGGGTGGACAGAGG
CGGGGGAAGCGTCACCCTAAGTCATGCCATTCGTCACTCCCTCCGTCTGA
CAAGCAAGCGCCCCCTTGTTGGCACTAAAGACAGACCTTTGCTCATTGTC
GGGACTCATCACAAGACTGGCACGGCACTAATGGCCTTGGTCCTCCGCGA
GGCGTTCAGCGTGCACAAGAGCTTGACAGGCGGGAAGAGTTCCGGGGTGA
TGATGGGTTTCTTTGGGAAAGCCGAAAAGGCCGGAGCGCCGTATGCGTTC
TACTACTGCGATCAACTCTATGCAGACACATGGAACAAAAGTGATTCGAG
TTCGACTGAGCATTTACCGAAACTGGTGGACAACCATCAGTTCTTCAACG
GGCATTATAAATTCGTCCATCTCGTGCGGGATCCTGTCGAGTTGGTAATT
TCGGCTTACCTGTACCACCATGGCGGCCCCCCCGACTGGCAAGAAGTATG
GTTGTACGAGAAACATCCTTTGAGCAACTACAAGACAGTGATGACGAACT
CGAGTTGCGACCCAAAAGGACGCACAGAAATGTCCTGGTATGACGTCCTC
CGGTGCTTGAACCAGAAGGAGGGGTTGCTCGCAGAAGCGTTGTTTCAGAC
GTATTTTGGGGCTCTGCCCTCTATGGTAGCAGCCGTGAAGCACATCCACG
GTGATCACCAGCATGCCCGCGTCCTACAGTTGGGGCTGGAAGAGTTTCAA
TTAAATTTTGACGGGACCGTTTCGAGAATGTTCGAATTTTTGGGTTTTGG
GAAGAAGGAGGTGGGAAAGATTGTGGAGGGTTGTGCGCCGTTCGATTTGC
AGAGGCAGAGTCAGGGAGAGAAAGAGAGAAACGAGCACGTGACAGCTGGC
AAGTTTGATAAAGGGAAATTAAGGGAGATCATGGTGGCATACGACGACCC
GGTGTTTAAGGAGGCGAGGAGGGTTCTGGGGTACCCTAAGGAGGAGAGCG
TAGTGAGGACGCGACCTGCGCACTAG
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Coding sequence (CDS) from alignment at chr25:266464..267639-

>NO25G00940.1 ID=NO25G00940.1|Name=NO25G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr25:266464..267639- (Nannochloropsis oceanica)
ATGCTGCCTCGGACGTGCGCGTCTCCAGGCCGGCATGGTGGAGGCAGCAG
CAGATGGAACAGCAACATCAGCGGCGGCAATGCTTCGTCCTGGTGGGGCC
TCTCATTAGCAAAGTGGGCATGGATCTCTGCCTGCGTGGGACTGCTCGGT
CTCTCTCTGAACTTTTGGGCCGATACCGTGTGGGTGGGGGTGGACAGAGG
CGGGGGAAGCGTCACCCTAAGTCATGCCATTCGTCACTCCCTCCGTCTGA
CAAGCAAGCGCCCCCTTGTTGGCACTAAAGACAGACCTTTGCTCATTGTC
GGGACTCATCACAAGACTGGCACGGCACTAATGGCCTTGGTCCTCCGCGA
GGCGTTCAGCGTGCACAAGAGCTTGACAGGCGGGAAGAGTTCCGGGGTGA
TGATGGGTTTCTTTGGGAAAGCCGAAAAGGCCGGAGCGCCGTATGCGTTC
TACTACTGCGATCAACTCTATGCAGACACATGGAACAAAAGTGATTCGAG
TTCGACTGAGCATTTACCGAAACTGGTGGACAACCATCAGTTCTTCAACG
GGCATTATAAATTCGTCCATCTCGTGCGGGATCCTGTCGAGTTGGTAATT
TCGGCTTACCTGTACCACCATGGCGGCCCCCCCGACTGGCAAGAAGTATG
GTTGTACGAGAAACATCCTTTGAGCAACTACAAGACAGTGATGACGAACT
CGAGTTGCGACCCAAAAGGACGCACAGAAATGTCCTGGTATGACGTCCTC
CGGTGCTTGAACCAGAAGGAGGGGTTGCTCGCAGAAGCGTTGTTTCAGAC
GTATTTTGGGGCTCTGCCCTCTATGGTAGCAGCCGTGAAGCACATCCACG
GTGATCACCAGCATGCCCGCGTCCTACAGTTGGGGCTGGAAGAGTTTCAA
TTAAATTTTGACGGGACCGTTTCGAGAATGTTCGAATTTTTGGGTTTTGG
GAAGAAGGAGGTGGGAAAGATTGTGGAGGGTTGTGCGCCGTTCGATTTGC
AGAGGCAGAGTCAGGGAGAGAAAGAGAGAAACGAGCACGTGACAGCTGGC
AAGTTTGATAAAGGGAAATTAAGGGAGATCATGGTGGCATACGACGACCC
GGTGTTTAAGGAGGCGAGGAGGGTTCTGGGGTACCCTAAGGAGGAGAGCG
TAGTGAGGACGCGACCTGCGCACTAG
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Synonyms
Publications