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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:260339..263835 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00920.3 vs.
Match: EWM21625.1 (Poly A polymerase regulatory subunit [Nannochloropsis gaditana]) HSP 1 Score: 352.8 bits (904), Expect = 1.200e-93 Identity = 186/325 (57.23%), Postives = 224/325 (68.92%), Query Frame = 0
Query: 26 TWVEDEKSWNEYQGVSVVERMENIKTTLKEGLARAQAEADAQGAGESSNIANVSESNVMIETVQALQEILPADLRVSLPWSALVNLINTGLARVGWSFLGPSQSNRKEGEKEGEKIVTAANSKNEAGVTLSTAAAAAIAPSAADRLAALTEALQGVMHWLPDAALDHTATPTVDPSTLGPEKSWAEYQAMWPVTYPSQPVLTVLSPSFPRRPYKARDDNLNPKKEGEGGR--EEGPFPCIRDPHWGQRKLFLNELELLTKYGEDGDVVVYAGAAPGRHIEHLSKELFPTLRFVLVDPAPFRIRESERVKLVAGLMTDALAREYSG 349
TW+EDEKSW++YQG+SV++RM+ IK+ LKEG+++++ EA A VM T++ LQE+LPADLR SLPWSALVNLINTGLA+VGWS G +S E K G+ D AALTEALQGV HWLPDAAL+HTATPT + GP KSW +Y+AMWPV YP + +L VLSP+FPRRPY++R D ++ EGGR E P RDPHWGQRKLFLNELELLT+Y E+GD+V+YAGAAPG H+E LS+ FP + FVLVDPAPFRI SERVKLVAGLMTDALAREY+G
Sbjct: 21 TWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAG-------------DYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGK-----------------------------DCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAG 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00920.3 ID=NO25G00920.3|Name=NO25G00920.3|organism=Nannochloropsis oceanica|type=mRNA|length=3332bp
AAAAACACATCGATACAGGCAGCAGCAGCTCCTGAGTGCCTCCTTCCAAG
CGCCTGTGCCTTGGGCCCCCCATCATCACCAAAGCAACGGAGCCACTCCT
CAGCCCCACCTGCACCATAATGTCCCAGGACCAGAAGCCACAGCAGGAGC
AAGGGTACGGGCCCCCAAACTCTCCATATAAATCCACAGTCACCACATGG
GTCGAAGATGAGAAATCCTGGAATGAATACCAAGGAGTGTCGGTCGTGGA
GCGCATGGAAAACATCAAGACCACGCTCAAGGAAGGACTCGCCCGTGCTC
AAGCGGAAGCAGACGCACAGGGTGCAGGAGAAAGCTCAAACATTGCAAAC
GTTTCGGAAAGCAACGTAATGATAGAGACGGTGCAAGCCCTTCAAGAAAT
ATTGCCGGCTGATTTACGGGTGTCTTTGCCATGGAGCGCACTGGTCAATT
TGATAAATACGGGGCTGGCTAGGGTAGGCTGGTCCTTCCTAGGCCCCTCG
CAGAGTAATCGGAAAGAAGGAGAGAAAGAGGGAGAAAAAATAGTAACAGC
AGCAAACAGCAAGAACGAGGCAGGGGTAACACTATCAACAGCAGCAGCAG
CAGCAATAGCACCATCAGCAGCAGATCGACTAGCTGCACTAACGGAGGCT
CTGCAGGGGGTGATGCATTGGTTGCCCGACGCGGCGTTAGACCACACGGC
AACCCCCACGGTTGACCCTTCAACTTTAGGGCCTGAGAAAAGCTGGGCGG
AGTATCAGGCGATGTGGCCGGTGACATACCCCTCCCAGCCCGTCCTCACA
GTCCTGTCCCCCTCCTTCCCCCGACGCCCTTACAAGGCCCGCGACGACAA
TTTAAATCCCAAAAAGGAAGGCGAGGGCGGAAGGGAGGAAGGTCCTTTCC
CCTGTATCCGGGATCCTCACTGGGGTCAGCGTAAATTGTTTTTGAACGAG
TTGGAGCTTCTGACCAAGTACGGAGAGGACGGCGATGTAGTGGTATATGC
CGGGGCTGCACCTGGGAGACACATCGAACATTTGAGCAAGGAGCTGTTTC
CGACGTTGAGATTTGTCCTGGTGGATCCGGCACCGTTTCGGATACGGGAG
AGCGAAAGGGTGAAATTGGTGGCGGGGCTGATGACGGATGCGCTCGCGAG
AGAATATTCAGGTGCGTGAGAGAGTGCCCTAGTTGATTTCTGTGTTTGAT
TATTCATGTGTTTATGATTCATTTTGTTCATTTCATTACTCATGCACGTA
ATCATGCATGAATTCTTCAATGGGATATTTATTAGCCCTTGTTACTGTTT
GTCTATCTTGAAATTATATTTTATGTGATAGATTTAGTTGTGTTTATTTA
TTATTATCATTCTTTTATAAGATCTACTTATTTGTGATCATTTTAATCAG
TGAATGATTTTTTTTTAACGTTTTTATCAAACCTTAACACATTCATTCAC
GCAATAAGTTTCTCCATTACTTATAAGCTGACAAATTGAAAAATACTCCA
GAGATGTGGAGTAGACTCGCCGATATGATATTTAAATGATTGAAAGGTCA
GTAGTCAATGTATTCTTTGATGACATATGTGTGTTAAGTAACACGGTAAT
GATTGTGTTAGAGGGAATTTGCCAGGTGAAATGGTGAAACCACATTCTAT
GAACCTCAATAGTACCAGCGCTACATCCCTTACATGATCGTCTTCTGTCT
TGCTAAACACATATGTATCATCGAAGAAGACGTTCACTACCGACCATTTC
AATCCCTTGAATATCATATCGGCTAACTTACGATATAGAACTGGAATGTT
TTTCAAGTCATATAGCGCTTTGAAATATTCTAACTGTCCATATTTACACA
CAAATTCTGTGGTGATAGGCTGATTGTACATTCATGACCGCGAAATATTT
CGCTCGCTTCATAACATCTAAGTACGAGTTAATCAGGGTTATCGGGTTGT
GGGTCTCACTATTCCTAAGAGCTTTGTTTAACTCACGATATATTATCTGT
AGCGAAACGGGCCTTTCCCCTCTGTTTTACGATGACAATTGGAGCCATCC
ACGGAGAGCTGGATTCCCGAATGATGCCCGCCTTCTGCAACGGTTCCAGC
TTCTTCTGCACGAAGTCTTCATGTGCGTAAGGATGGCATCGTGGCGGAAC
AGCAATCTGTTTATGCTCTACAGTGTCGATGGTGAGCTTGACCAAATCTG
TCTTCTCTGGAAATCTGGGTCTATAAAACGTGCCCGAACCATTGACGTGT
ACTTCTTCTTGAACTCCTGCGGTAGCGCCGACTCCGACAGCTCCATATCT
ATCCACTCCCGCGTCTATCCAATCCCCTGAAGTGCTGTAGGCTCTTGGTT
CTTCGTCATTCTCTTCGGTCTCAGCGCTTCACACTTCCTGATATTCGTCA
GCGTCGCTGCATTCAATTATTTATTGGTTTATTTATGTTTTCTGTATGAT
TTCTTATGCCCGATAACCATCTAGTGCGCAAAGTCTGCTTCCACTGTATA
TATAGAGAGGGCGAGAGAAAGAGAGCAGACTTGGCTAAAATTTCCTTCCC
GCTTGCTTCTCTCAAACAGGTAGGAACAACGTAATTTTCATCTCCGATAT
TCGTCGGACGTACGCATCAGAGGACCTCATCCTCGAAGATATGCTGGATC
AACAGAGGTGGCATGAATTGATGAATCCCAAGGTATCAATGCTCAAATTT
CGCCTGCCATGGAGGGCGGGGGAGACGGAGTACTTGGAAGGGGAGGTGTG
GACACAGCCGTATGCAAAGGCCCGATCGACTGAGACGAGGTTGGTGGTGA
GGGGAAGAGAGGGGGGATAGAGGGAGGGAAAGAGGGTGGGCGAGGATGCA
AGGGAGGAGGAGGAAGAGAAGGAGGAGACTCTCTCAAGGGAGAAGGGGAA
GGAGGAGAAAGCGGAGAAGAGAGGGAAGGATGGAGGAGGATTTGGGATAA
TCGTCTTTACGAGGAGCAGTGTTTCTTTTTCAACACGGTGGTGAGGCCTG
TAAGGCACGCGCACGGTGTGAGAGGTGCTGCGTTGAAAGAGACGTGGGAT
TATGCAAGAGAAGTGGAGATATGGAGGGAGTTCTTGAGGAGGAGGGATGG
AGGGAGGAAGGGAGGGAGAGAGGAAGAGAACGAGGTGATCGCGAAGATGT
CAGTTCAATTAACGATGCATTTGGAGGGCGCTCAGGGGAGGGAGTGGATG
AGAAGGATTGACTGGAGGGTGATGGGGAAAAGAAGGAAGGAAGGAGGTGG
TTGCGAAGGAGGGAGAAAGAGGAGGAATGTGTACCAGCAGCAGCAGTGGC
CGAATGGGCGGGGAAGGGAGGGGGGGAGAAGC back to topprotein sequence of NO25G00920.3 >NO25G00920.3-protein ID=NO25G00920.3-protein|Name=NO25G00920.3|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MSQDQKPQQEQGYGPPNSPYKSTVTTWVEDEKSWNEYQGVSVVERMENIK
TTLKEGLARAQAEADAQGAGESSNIANVSESNVMIETVQALQEILPADLR
VSLPWSALVNLINTGLARVGWSFLGPSQSNRKEGEKEGEKIVTAANSKNE
AGVTLSTAAAAAIAPSAADRLAALTEALQGVMHWLPDAALDHTATPTVDP
STLGPEKSWAEYQAMWPVTYPSQPVLTVLSPSFPRRPYKARDDNLNPKKE
GEGGREEGPFPCIRDPHWGQRKLFLNELELLTKYGEDGDVVVYAGAAPGR
HIEHLSKELFPTLRFVLVDPAPFRIRESERVKLVAGLMTDALAREYSGA* back to topmRNA from alignment at chr25:260339..263835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00920.3 ID=NO25G00920.3|Name=NO25G00920.3|organism=Nannochloropsis oceanica|type=mRNA|length=3497bp|location=Sequence derived from alignment at chr25:260339..263835- (Nannochloropsis oceanica)
AAAAACACATCGATACAGGCAGCAGCAGCTCCTGAGTGCCTCCTTCCAAG
CGCCTGTGCCTTGGGCCCCCCATCATCACCAAAGCAACGGAGCCACTCCT
CAGCCCCACCTGCACCATAATGTCCCAGGACCAGAAGCCACAGCAGGAGC
AAGGGTACGGGCCCCCAAACTCTCCATATAAATCCACAGTCACCACATGG
GTCGAAGATGAGAAATCCTGGAATGAATACCAAGGAGTGTCGGTCGTGGA
GCGCATGGAAAACATCAAGACCACGCTCAAGGAAGGACTCGCCCGTGCTC
AAGCGGAAGCAGACGCACAGGGTGCAGGAGAAAGCTCAAACATTGCAAAC
GTTTCGGAAAGCAACGTAATGATAGAGACGGTGCAAGCCCTTCAAGAAAT
ATTGCCGGCTGATTTACGGGTGTCTTTGCCATGGAGCGCACTGGTCAATT
TGATAAATACGGGGCTGGCTAGGGTAGGCTGGTCCTTCCTAGGCCCCTCG
CAGAGTAATCGGAAAGAAGGAGAGAAAGAGGGAGAAAAAATAGTAACAGC
AGCAAACAGCAAGAACGAGGCAGGGGTAACACTATCAACAGCAGCAGCAG
CAGCAATAGCACCATCAGCAGCAGATCGACTAGCTGCACTAACGGAGGCT
CTGCAGGGGGTGATGCATTGGTTGCCCGACGCGGCGTTAGACCACACGGC
AACCCCCACGGTTGACCCTTCAACTTTAGGGCCTGAGAAAAGCTGGGCGG
AGTATCAGGTACGTGGTTTCAATAAATGTTGAGAGAAAAATGGATGGAAA
AGCGCACAAAATGATGGCCAAACTACCTCTTCTTTCTTCTCGCTCCCATA
GTTCTTTCTGTGTCCATTCTGTACACGCTTATTCCTCTTTCTTTCCCTCC
TTCCTATCTCTTCTTCCCCCTAGGCGATGTGGCCGGTGACATACCCCTCC
CAGCCCGTCCTCACAGTCCTGTCCCCCTCCTTCCCCCGACGCCCTTACAA
GGCCCGCGACGACAATTTAAATCCCAAAAAGGAAGGCGAGGGCGGAAGGG
AGGAAGGTCCTTTCCCCTGTATCCGGGATCCTCACTGGGGTCAGCGTAAA
TTGTTTTTGAACGAGTTGGAGCTTCTGACCAAGTACGGAGAGGACGGCGA
TGTAGTGGTATATGCCGGGGCTGCACCTGGGAGACACATCGAACATTTGA
GCAAGGAGCTGTTTCCGACGTTGAGATTTGTCCTGGTGGATCCGGCACCG
TTTCGGATACGGGAGAGCGAAAGGGTGAAATTGGTGGCGGGGCTGATGAC
GGATGCGCTCGCGAGAGAATATTCAGGTGCGTGAGAGAGTGCCCTAGTTG
ATTTCTGTGTTTGATTATTCATGTGTTTATGATTCATTTTGTTCATTTCA
TTACTCATGCACGTAATCATGCATGAATTCTTCAATGGGATATTTATTAG
CCCTTGTTACTGTTTGTCTATCTTGAAATTATATTTTATGTGATAGATTT
AGTTGTGTTTATTTATTATTATCATTCTTTTATAAGATCTACTTATTTGT
GATCATTTTAATCAGTGAATGATTTTTTTTTAACGTTTTTATCAAACCTT
AACACATTCATTCACGCAATAAGTTTCTCCATTACTTATAAGCTGACAAA
TTGAAAAATACTCCAGAGATGTGGAGTAGACTCGCCGATATGATATTTAA
ATGATTGAAAGGTCAGTAGTCAATGTATTCTTTGATGACATATGTGTGTT
AAGTAACACGGTAATGATTGTGTTAGAGGGAATTTGCCAGGTGAAATGGT
GAAACCACATTCTATGAACCTCAATAGTACCAGCGCTACATCCCTTACAT
GATCGTCTTCTGTCTTGCTAAACACATATGTATCATCGAAGAAGACGTTC
ACTACCGACCATTTCAATCCCTTGAATATCATATCGGCTAACTTACGATA
TAGAACTGGAATGTTTTTCAAGTCATATAGCGCTTTGAAATATTCTAACT
GTCCATATTTACACACAAATTCTGTGGTGATAGGCTGATTGTACATTCAT
GACCGCGAAATATTTCGCTCGCTTCATAACATCTAAGTACGAGTTAATCA
GGGTTATCGGGTTGTGGGTCTCACTATTCCTAAGAGCTTTGTTTAACTCA
CGATATATTATCTGTAGCGAAACGGGCCTTTCCCCTCTGTTTTACGATGA
CAATTGGAGCCATCCACGGAGAGCTGGATTCCCGAATGATGCCCGCCTTC
TGCAACGGTTCCAGCTTCTTCTGCACGAAGTCTTCATGTGCGTAAGGATG
GCATCGTGGCGGAACAGCAATCTGTTTATGCTCTACAGTGTCGATGGTGA
GCTTGACCAAATCTGTCTTCTCTGGAAATCTGGGTCTATAAAACGTGCCC
GAACCATTGACGTGTACTTCTTCTTGAACTCCTGCGGTAGCGCCGACTCC
GACAGCTCCATATCTATCCACTCCCGCGTCTATCCAATCCCCTGAAGTGC
TGTAGGCTCTTGGTTCTTCGTCATTCTCTTCGGTCTCAGCGCTTCACACT
TCCTGATATTCGTCAGCGTCGCTGCATTCAATTATTTATTGGTTTATTTA
TGTTTTCTGTATGATTTCTTATGCCCGATAACCATCTAGTGCGCAAAGTC
TGCTTCCACTGTATATATAGAGAGGGCGAGAGAAAGAGAGCAGACTTGGC
TAAAATTTCCTTCCCGCTTGCTTCTCTCAAACAGGTAGGAACAACGTAAT
TTTCATCTCCGATATTCGTCGGACGTACGCATCAGAGGACCTCATCCTCG
AAGATATGCTGGATCAACAGAGGTGGCATGAATTGATGAATCCCAAGGTA
TCAATGCTCAAATTTCGCCTGCCATGGAGGGCGGGGGAGACGGAGTACTT
GGAAGGGGAGGTGTGGACACAGCCGTATGCAAAGGCCCGATCGACTGAGA
CGAGGTTGGTGGTGAGGGGAAGAGAGGGGGGATAGAGGGAGGGAAAGAGG
GTGGGCGAGGATGCAAGGGAGGAGGAGGAAGAGAAGGAGGAGACTCTCTC
AAGGGAGAAGGGGAAGGAGGAGAAAGCGGAGAAGAGAGGGAAGGATGGAG
GAGGATTTGGGATAATCGTCTTTACGAGGAGCAGTGTTTCTTTTTCAACA
CGGTGGTGAGGCCTGTAAGGCACGCGCACGGTGTGAGAGGTGCTGCGTTG
AAAGAGACGTGGGATTATGCAAGAGAAGTGGAGATATGGAGGGAGTTCTT
GAGGAGGAGGGATGGAGGGAGGAAGGGAGGGAGAGAGGAAGAGAACGAGG
TGATCGCGAAGATGTCAGTTCAATTAACGATGCATTTGGAGGGCGCTCAG
GGGAGGGAGTGGATGAGAAGGATTGACTGGAGGGTGATGGGGAAAAGAAG
GAAGGAAGGAGGTGGTTGCGAAGGAGGGAGAAAGAGGAGGAATGTGTACC
AGCAGCAGCAGTGGCCGAATGGGCGGGGAAGGGAGGGGGGGAGAAGC back to topCoding sequence (CDS) from alignment at chr25:260339..263835- >NO25G00920.3 ID=NO25G00920.3|Name=NO25G00920.3|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at chr25:260339..263835- (Nannochloropsis oceanica)
ATGTCCCAGGACCAGAAGCCACAGCAGGAGCAAGGGTACGGGCCCCCAAA
CTCTCCATATAAATCCACAGTCACCACATGGGTCGAAGATGAGAAATCCT
GGAATGAATACCAAGGAGTGTCGGTCGTGGAGCGCATGGAAAACATCAAG
ACCACGCTCAAGGAAGGACTCGCCCGTGCTCAAGCGGAAGCAGACGCACA
GGGTGCAGGAGAAAGCTCAAACATTGCAAACGTTTCGGAAAGCAACGTAA
TGATAGAGACGGTGCAAGCCCTTCAAGAAATATTGCCGGCTGATTTACGG
GTGTCTTTGCCATGGAGCGCACTGGTCAATTTGATAAATACGGGGCTGGC
TAGGGTAGGCTGGTCCTTCCTAGGCCCCTCGCAGAGTAATCGGAAAGAAG
GAGAGAAAGAGGGAGAAAAAATAGTAACAGCAGCAAACAGCAAGAACGAG
GCAGGGGTAACACTATCAACAGCAGCAGCAGCAGCAATAGCACCATCAGC
AGCAGATCGACTAGCTGCACTAACGGAGGCTCTGCAGGGGGTGATGCATT
GGTTGCCCGACGCGGCGTTAGACCACACGGCAACCCCCACGGTTGACCCT
TCAACTTTAGGGCCTGAGAAAAGCTGGGCGGAGTATCAGGCGATGTGGCC
GGTGACATACCCCTCCCAGCCCGTCCTCACAGTCCTGTCCCCCTCCTTCC
CCCGACGCCCTTACAAGGCCCGCGACGACAATTTAAATCCCAAAAAGGAA
GGCGAGGGCGGAAGGGAGGAAGGTCCTTTCCCCTGTATCCGGGATCCTCA
CTGGGGTCAGCGTAAATTGTTTTTGAACGAGTTGGAGCTTCTGACCAAGT
ACGGAGAGGACGGCGATGTAGTGGTATATGCCGGGGCTGCACCTGGGAGA
CACATCGAACATTTGAGCAAGGAGCTGTTTCCGACGTTGAGATTTGTCCT
GGTGGATCCGGCACCGTTTCGGATACGGGAGAGCGAAAGGGTGAAATTGG
TGGCGGGGCTGATGACGGATGCGCTCGCGAGAGAATATTCAGGTGCGTGA back to top
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