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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:260339..263835 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00920.2 vs.
Match: EWM21625.1 (Poly A polymerase regulatory subunit [Nannochloropsis gaditana]) HSP 1 Score: 497.3 bits (1279), Expect = 4.900e-137 Identity = 257/408 (62.99%), Postives = 302/408 (74.02%), Query Frame = 0
Query: 26 TWVEDEKSWNEYQGVSVVERMENIKTTLKEGLARAQAEADAQGAGESSNIANVSESNVMIETVQALQEILPADLRVSLPWSALVNLINTGLARVGWSFLGPSQSNRKEGEKEGEKIVTAANSKNEAGVTLSTAAAAAIAPSAADRLAALTEALQGVMHWLPDAALDHTATPTVDPSTLGPEKSWAEYQAMWPVTYPSQPVLTVLSPSFPRRPYKARDDNLNPKKEGEGGR--EEGPFPCIRDPHWGQRKLFLNELELLTKYGEDGDVVVYAGAAPGRHIEHLSKELFPTLRFVLVDPAPFRIRESERVKLVAGLMTDALAREYSGRNNVIFISDIRRTYASEDLILEDMLDQQRWHELMNPKVSMLKFRLPWRAGETEYLEGEVWTQPYAKARSTETRLVVRG-REGG 431
TW+EDEKSW++YQG+SV++RM+ IK+ LKEG+++++ EA A VM T++ LQE+LPADLR SLPWSALVNLINTGLA+VGWS G +S E K G+ D AALTEALQGV HWLPDAAL+HTATPT + GP KSW +Y+AMWPV YP + +L VLSP+FPRRPY++R D ++ EGGR E P RDPHWGQRKLFLNELELLT+Y E+GD+V+YAGAAPG H+E LS+ FP + FVLVDPAPFRI SERVKLVAGLMTDALAREY+GR N+IFISDIRRTYASEDLILEDM +Q+RWHE+M PKVSM+KFRLPWRAGETEYL+GEVWTQPYAKARSTETRLVV G R+GG
Sbjct: 21 TWIEDEKSWSDYQGLSVLKRMDMIKSVLKEGISQSRDEATAG-------------DYVMGNTMKYLQEVLPADLRTSLPWSALVNLINTGLAKVGWSITGAHESEAPERGKTGK-----------------------------DCEAALTEALQGVTHWLPDAALNHTATPTTTQTVHGPVKSWQDYRAMWPVHYPDEDILRVLSPTFPRRPYRSRQDEEGGEEGKEGGREGEASPPSMTRDPHWGQRKLFLNELELLTRYAEEGDLVLYAGAAPGWHLELLSRRFFPGVAFVLVDPAPFRIEASERVKLVAGLMTDALAREYAGRENLIFISDIRRTYASEDLILEDMREQERWHEMMGPKVSMMKFRLPWRAGETEYLDGEVWTQPYAKARSTETRLVVEGPRKGG 386
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00920.2 ID=NO25G00920.2|Name=NO25G00920.2|organism=Nannochloropsis oceanica|type=mRNA|length=1924bp
AAAAACACATCGATACAGGCAGCAGCAGCTCCTGAGTGCCTCCTTCCAAG
CGCCTGTGCCTTGGGCCCCCCATCATCACCAAAGCAACGGAGCCACTCCT
CAGCCCCACCTGCACCATAATGTCCCAGGACCAGAAGCCACAGCAGGAGC
AAGGGTACGGGCCCCCAAACTCTCCATATAAATCCACAGTCACCACATGG
GTCGAAGATGAGAAATCCTGGAATGAATACCAAGGAGTGTCGGTCGTGGA
GCGCATGGAAAACATCAAGACCACGCTCAAGGAAGGACTCGCCCGTGCTC
AAGCGGAAGCAGACGCACAGGGTGCAGGAGAAAGCTCAAACATTGCAAAC
GTTTCGGAAAGCAACGTAATGATAGAGACGGTGCAAGCCCTTCAAGAAAT
ATTGCCGGCTGATTTACGGGTGTCTTTGCCATGGAGCGCACTGGTCAATT
TGATAAATACGGGGCTGGCTAGGGTAGGCTGGTCCTTCCTAGGCCCCTCG
CAGAGTAATCGGAAAGAAGGAGAGAAAGAGGGAGAAAAAATAGTAACAGC
AGCAAACAGCAAGAACGAGGCAGGGGTAACACTATCAACAGCAGCAGCAG
CAGCAATAGCACCATCAGCAGCAGATCGACTAGCTGCACTAACGGAGGCT
CTGCAGGGGGTGATGCATTGGTTGCCCGACGCGGCGTTAGACCACACGGC
AACCCCCACGGTTGACCCTTCAACTTTAGGGCCTGAGAAAAGCTGGGCGG
AGTATCAGGCGATGTGGCCGGTGACATACCCCTCCCAGCCCGTCCTCACA
GTCCTGTCCCCCTCCTTCCCCCGACGCCCTTACAAGGCCCGCGACGACAA
TTTAAATCCCAAAAAGGAAGGCGAGGGCGGAAGGGAGGAAGGTCCTTTCC
CCTGTATCCGGGATCCTCACTGGGGTCAGCGTAAATTGTTTTTGAACGAG
TTGGAGCTTCTGACCAAGTACGGAGAGGACGGCGATGTAGTGGTATATGC
CGGGGCTGCACCTGGGAGACACATCGAACATTTGAGCAAGGAGCTGTTTC
CGACGTTGAGATTTGTCCTGGTGGATCCGGCACCGTTTCGGATACGGGAG
AGCGAAAGGGTGAAATTGGTGGCGGGGCTGATGACGGATGCGCTCGCGAG
AGAATATTCAGGTAGGAACAACGTAATTTTCATCTCCGATATTCGTCGGA
CGTACGCATCAGAGGACCTCATCCTCGAAGATATGCTGGATCAACAGAGG
TGGCATGAATTGATGAATCCCAAGGTATCAATGCTCAAATTTCGCCTGCC
ATGGAGGGCGGGGGAGACGGAGTACTTGGAAGGGGAGGTGTGGACACAGC
CGTATGCAAAGGCCCGATCGACTGAGACGAGGTTGGTGGTGAGGGGAAGA
GAGGGGGGATAGAGGGAGGGAAAGAGGGTGGGCGAGGATGCAAGGGAGGA
GGAGGAAGAGAAGGAGGAGACTCTCTCAAGGGAGAAGGGGAAGGAGGAGA
AAGCGGAGAAGAGAGGGAAGGATGGAGGAGGATTTGGGATAATCGTCTTT
ACGAGGAGCAGTGTTTCTTTTTCAACACGGTGGTGAGGCCTGTAAGGCAC
GCGCACGGTGTGAGAGGTGCTGCGTTGAAAGAGACGTGGGATTATGCAAG
AGAAGTGGAGATATGGAGGGAGTTCTTGAGGAGGAGGGATGGAGGGAGGA
AGGGAGGGAGAGAGGAAGAGAACGAGGTGATCGCGAAGATGTCAGTTCAA
TTAACGATGCATTTGGAGGGCGCTCAGGGGAGGGAGTGGATGAGAAGGAT
TGACTGGAGGGTGATGGGGAAAAGAAGGAAGGAAGGAGGTGGTTGCGAAG
GAGGGAGAAAGAGGAGGAATGTGTACCAGCAGCAGCAGTGGCCGAATGGG
CGGGGAAGGGAGGGGGGGAGAAGC back to topprotein sequence of NO25G00920.2 >NO25G00920.2-protein ID=NO25G00920.2-protein|Name=NO25G00920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MSQDQKPQQEQGYGPPNSPYKSTVTTWVEDEKSWNEYQGVSVVERMENIK
TTLKEGLARAQAEADAQGAGESSNIANVSESNVMIETVQALQEILPADLR
VSLPWSALVNLINTGLARVGWSFLGPSQSNRKEGEKEGEKIVTAANSKNE
AGVTLSTAAAAAIAPSAADRLAALTEALQGVMHWLPDAALDHTATPTVDP
STLGPEKSWAEYQAMWPVTYPSQPVLTVLSPSFPRRPYKARDDNLNPKKE
GEGGREEGPFPCIRDPHWGQRKLFLNELELLTKYGEDGDVVVYAGAAPGR
HIEHLSKELFPTLRFVLVDPAPFRIRESERVKLVAGLMTDALAREYSGRN
NVIFISDIRRTYASEDLILEDMLDQQRWHELMNPKVSMLKFRLPWRAGET
EYLEGEVWTQPYAKARSTETRLVVRGREGG* back to topmRNA from alignment at chr25:260339..263835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00920.2 ID=NO25G00920.2|Name=NO25G00920.2|organism=Nannochloropsis oceanica|type=mRNA|length=3497bp|location=Sequence derived from alignment at chr25:260339..263835- (Nannochloropsis oceanica)
AAAAACACATCGATACAGGCAGCAGCAGCTCCTGAGTGCCTCCTTCCAAG
CGCCTGTGCCTTGGGCCCCCCATCATCACCAAAGCAACGGAGCCACTCCT
CAGCCCCACCTGCACCATAATGTCCCAGGACCAGAAGCCACAGCAGGAGC
AAGGGTACGGGCCCCCAAACTCTCCATATAAATCCACAGTCACCACATGG
GTCGAAGATGAGAAATCCTGGAATGAATACCAAGGAGTGTCGGTCGTGGA
GCGCATGGAAAACATCAAGACCACGCTCAAGGAAGGACTCGCCCGTGCTC
AAGCGGAAGCAGACGCACAGGGTGCAGGAGAAAGCTCAAACATTGCAAAC
GTTTCGGAAAGCAACGTAATGATAGAGACGGTGCAAGCCCTTCAAGAAAT
ATTGCCGGCTGATTTACGGGTGTCTTTGCCATGGAGCGCACTGGTCAATT
TGATAAATACGGGGCTGGCTAGGGTAGGCTGGTCCTTCCTAGGCCCCTCG
CAGAGTAATCGGAAAGAAGGAGAGAAAGAGGGAGAAAAAATAGTAACAGC
AGCAAACAGCAAGAACGAGGCAGGGGTAACACTATCAACAGCAGCAGCAG
CAGCAATAGCACCATCAGCAGCAGATCGACTAGCTGCACTAACGGAGGCT
CTGCAGGGGGTGATGCATTGGTTGCCCGACGCGGCGTTAGACCACACGGC
AACCCCCACGGTTGACCCTTCAACTTTAGGGCCTGAGAAAAGCTGGGCGG
AGTATCAGGTACGTGGTTTCAATAAATGTTGAGAGAAAAATGGATGGAAA
AGCGCACAAAATGATGGCCAAACTACCTCTTCTTTCTTCTCGCTCCCATA
GTTCTTTCTGTGTCCATTCTGTACACGCTTATTCCTCTTTCTTTCCCTCC
TTCCTATCTCTTCTTCCCCCTAGGCGATGTGGCCGGTGACATACCCCTCC
CAGCCCGTCCTCACAGTCCTGTCCCCCTCCTTCCCCCGACGCCCTTACAA
GGCCCGCGACGACAATTTAAATCCCAAAAAGGAAGGCGAGGGCGGAAGGG
AGGAAGGTCCTTTCCCCTGTATCCGGGATCCTCACTGGGGTCAGCGTAAA
TTGTTTTTGAACGAGTTGGAGCTTCTGACCAAGTACGGAGAGGACGGCGA
TGTAGTGGTATATGCCGGGGCTGCACCTGGGAGACACATCGAACATTTGA
GCAAGGAGCTGTTTCCGACGTTGAGATTTGTCCTGGTGGATCCGGCACCG
TTTCGGATACGGGAGAGCGAAAGGGTGAAATTGGTGGCGGGGCTGATGAC
GGATGCGCTCGCGAGAGAATATTCAGGTGCGTGAGAGAGTGCCCTAGTTG
ATTTCTGTGTTTGATTATTCATGTGTTTATGATTCATTTTGTTCATTTCA
TTACTCATGCACGTAATCATGCATGAATTCTTCAATGGGATATTTATTAG
CCCTTGTTACTGTTTGTCTATCTTGAAATTATATTTTATGTGATAGATTT
AGTTGTGTTTATTTATTATTATCATTCTTTTATAAGATCTACTTATTTGT
GATCATTTTAATCAGTGAATGATTTTTTTTTAACGTTTTTATCAAACCTT
AACACATTCATTCACGCAATAAGTTTCTCCATTACTTATAAGCTGACAAA
TTGAAAAATACTCCAGAGATGTGGAGTAGACTCGCCGATATGATATTTAA
ATGATTGAAAGGTCAGTAGTCAATGTATTCTTTGATGACATATGTGTGTT
AAGTAACACGGTAATGATTGTGTTAGAGGGAATTTGCCAGGTGAAATGGT
GAAACCACATTCTATGAACCTCAATAGTACCAGCGCTACATCCCTTACAT
GATCGTCTTCTGTCTTGCTAAACACATATGTATCATCGAAGAAGACGTTC
ACTACCGACCATTTCAATCCCTTGAATATCATATCGGCTAACTTACGATA
TAGAACTGGAATGTTTTTCAAGTCATATAGCGCTTTGAAATATTCTAACT
GTCCATATTTACACACAAATTCTGTGGTGATAGGCTGATTGTACATTCAT
GACCGCGAAATATTTCGCTCGCTTCATAACATCTAAGTACGAGTTAATCA
GGGTTATCGGGTTGTGGGTCTCACTATTCCTAAGAGCTTTGTTTAACTCA
CGATATATTATCTGTAGCGAAACGGGCCTTTCCCCTCTGTTTTACGATGA
CAATTGGAGCCATCCACGGAGAGCTGGATTCCCGAATGATGCCCGCCTTC
TGCAACGGTTCCAGCTTCTTCTGCACGAAGTCTTCATGTGCGTAAGGATG
GCATCGTGGCGGAACAGCAATCTGTTTATGCTCTACAGTGTCGATGGTGA
GCTTGACCAAATCTGTCTTCTCTGGAAATCTGGGTCTATAAAACGTGCCC
GAACCATTGACGTGTACTTCTTCTTGAACTCCTGCGGTAGCGCCGACTCC
GACAGCTCCATATCTATCCACTCCCGCGTCTATCCAATCCCCTGAAGTGC
TGTAGGCTCTTGGTTCTTCGTCATTCTCTTCGGTCTCAGCGCTTCACACT
TCCTGATATTCGTCAGCGTCGCTGCATTCAATTATTTATTGGTTTATTTA
TGTTTTCTGTATGATTTCTTATGCCCGATAACCATCTAGTGCGCAAAGTC
TGCTTCCACTGTATATATAGAGAGGGCGAGAGAAAGAGAGCAGACTTGGC
TAAAATTTCCTTCCCGCTTGCTTCTCTCAAACAGGTAGGAACAACGTAAT
TTTCATCTCCGATATTCGTCGGACGTACGCATCAGAGGACCTCATCCTCG
AAGATATGCTGGATCAACAGAGGTGGCATGAATTGATGAATCCCAAGGTA
TCAATGCTCAAATTTCGCCTGCCATGGAGGGCGGGGGAGACGGAGTACTT
GGAAGGGGAGGTGTGGACACAGCCGTATGCAAAGGCCCGATCGACTGAGA
CGAGGTTGGTGGTGAGGGGAAGAGAGGGGGGATAGAGGGAGGGAAAGAGG
GTGGGCGAGGATGCAAGGGAGGAGGAGGAAGAGAAGGAGGAGACTCTCTC
AAGGGAGAAGGGGAAGGAGGAGAAAGCGGAGAAGAGAGGGAAGGATGGAG
GAGGATTTGGGATAATCGTCTTTACGAGGAGCAGTGTTTCTTTTTCAACA
CGGTGGTGAGGCCTGTAAGGCACGCGCACGGTGTGAGAGGTGCTGCGTTG
AAAGAGACGTGGGATTATGCAAGAGAAGTGGAGATATGGAGGGAGTTCTT
GAGGAGGAGGGATGGAGGGAGGAAGGGAGGGAGAGAGGAAGAGAACGAGG
TGATCGCGAAGATGTCAGTTCAATTAACGATGCATTTGGAGGGCGCTCAG
GGGAGGGAGTGGATGAGAAGGATTGACTGGAGGGTGATGGGGAAAAGAAG
GAAGGAAGGAGGTGGTTGCGAAGGAGGGAGAAAGAGGAGGAATGTGTACC
AGCAGCAGCAGTGGCCGAATGGGCGGGGAAGGGAGGGGGGGAGAAGC back to topCoding sequence (CDS) from alignment at chr25:260339..263835- >NO25G00920.2 ID=NO25G00920.2|Name=NO25G00920.2|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr25:260339..263835- (Nannochloropsis oceanica)
ATGTCCCAGGACCAGAAGCCACAGCAGGAGCAAGGGTACGGGCCCCCAAA
CTCTCCATATAAATCCACAGTCACCACATGGGTCGAAGATGAGAAATCCT
GGAATGAATACCAAGGAGTGTCGGTCGTGGAGCGCATGGAAAACATCAAG
ACCACGCTCAAGGAAGGACTCGCCCGTGCTCAAGCGGAAGCAGACGCACA
GGGTGCAGGAGAAAGCTCAAACATTGCAAACGTTTCGGAAAGCAACGTAA
TGATAGAGACGGTGCAAGCCCTTCAAGAAATATTGCCGGCTGATTTACGG
GTGTCTTTGCCATGGAGCGCACTGGTCAATTTGATAAATACGGGGCTGGC
TAGGGTAGGCTGGTCCTTCCTAGGCCCCTCGCAGAGTAATCGGAAAGAAG
GAGAGAAAGAGGGAGAAAAAATAGTAACAGCAGCAAACAGCAAGAACGAG
GCAGGGGTAACACTATCAACAGCAGCAGCAGCAGCAATAGCACCATCAGC
AGCAGATCGACTAGCTGCACTAACGGAGGCTCTGCAGGGGGTGATGCATT
GGTTGCCCGACGCGGCGTTAGACCACACGGCAACCCCCACGGTTGACCCT
TCAACTTTAGGGCCTGAGAAAAGCTGGGCGGAGTATCAGGCGATGTGGCC
GGTGACATACCCCTCCCAGCCCGTCCTCACAGTCCTGTCCCCCTCCTTCC
CCCGACGCCCTTACAAGGCCCGCGACGACAATTTAAATCCCAAAAAGGAA
GGCGAGGGCGGAAGGGAGGAAGGTCCTTTCCCCTGTATCCGGGATCCTCA
CTGGGGTCAGCGTAAATTGTTTTTGAACGAGTTGGAGCTTCTGACCAAGT
ACGGAGAGGACGGCGATGTAGTGGTATATGCCGGGGCTGCACCTGGGAGA
CACATCGAACATTTGAGCAAGGAGCTGTTTCCGACGTTGAGATTTGTCCT
GGTGGATCCGGCACCGTTTCGGATACGGGAGAGCGAAAGGGTGAAATTGG
TGGCGGGGCTGATGACGGATGCGCTCGCGAGAGAATATTCAGGTAGGAAC
AACGTAATTTTCATCTCCGATATTCGTCGGACGTACGCATCAGAGGACCT
CATCCTCGAAGATATGCTGGATCAACAGAGGTGGCATGAATTGATGAATC
CCAAGGTATCAATGCTCAAATTTCGCCTGCCATGGAGGGCGGGGGAGACG
GAGTACTTGGAAGGGGAGGTGTGGACACAGCCGTATGCAAAGGCCCGATC
GACTGAGACGAGGTTGGTGGTGAGGGGAAGAGAGGGGGGATAG back to top
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