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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:201712..204734 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00730.1 vs.
Match: XP_005854208.1 (long-chain acyl-CoA ligase [Nannochloropsis gaditana CCMP526]; EKU22147.1 long-chain acyl-CoA ligase [Nannochloropsis gaditana CCMP526]; EWM21593.1 amp-dependent synthetase and ligase [Nannochloropsis gaditana]) HSP 1 Score: 947.6 bits (2448), Expect = 1.900e-272 Identity = 480/621 (77.29%), Postives = 536/621 (86.31%), Query Frame = 0
Query: 1 MVDKAKYLLQQAGIGPGDKVAVISRNRVEWAVGCMASLSLGATWVPMYEEQRMNECEYILKDSGAKLLLVGSEETYDKTRHFLASNSAGSSRSSSSSSSSSSSITQQGFQGPVPSLQDIWTFDIDVPARMAMVSPSMLASSPS---SPHIHADDVAVLIYTSGTTGTPKGVELTHANLCSNIQGMWEVVKPEDMPDALSLAFLPWAHSIGLNCELFNMMSRGARVALAQDIKTIASDIKEVKPNILFAVPTLYKKVYDKIQDKINSSGRWSRWLVDTAVAVAEKRLQVLREGGVLSLVLQLQYNLVDRIVLSKLRETMGGNVKLSPVGGSKMSLPVTRFFEAALGIAILEGYGLSETSPLLSISRPEVQTRRLGSVGQAVKGAELAVVRDGRRVPEGEEGEVWAAGPMVFKGYLSKEEETAAAFGELEGRKWFRTGDLGRLSEGFLTITGRLKELYKLENGKYVCAPVVEKALLESEYISQVVLHGADLPFNVALIVPNWEKLTLWALSSKLAGLSPTPSKEELSAHPEVQAFMRQTIVLACKDKVKKYEMPQEWLLLTEAFTVENEMLTPKMSIKRHAVIKAYLPALTALYEQAAIAHRSKSRTKETVANQQPCDDALAA 619
MV KAK++L++AGIGPGDKVA +S NRVEWAVGCMASLSLGATWVPMYE+QR+ ECEYIL+DSGAKLLLVGS E YDKTRHFL SR+ + + + S+ V SL+DIWTFD+DVPARMA V+ M A + + S + DDVAVLIYTSGTTGTPKGVELTH NLC+NI+GMWEVV+PEDMP+ALSLAFLPWAHSIG+NCELFNMMSRGARVALAQD+ TIASDIKEV+PNILFAVPTLYKKVYD+IQDKI S G+WSRWLVD AVAVAEKRL++LREG LSL LQ QY ++D IVLSKLR+T+GG V++SPVGGSKMSLPVTRFFEAALGIAILEGYGLSETSPLLSISRP++Q RRLGSVGQAVKGAELAVVRDG RVPEGEEGE+WA+GPMVFKGYL K+EETAAAFGE++G+KWFRTGDLG L +GFLTITGRLKELYKLENGKYVCAPVVEKALLESEYI QVVL+GADLPFN ALIVPNWEKLT W +S KL GLS + K E+ HPEVQAFMR+ IVLACKDK+KKYEMPQ+WLLL E FTVENEMLTPKMSIKRHAVIKAY AL A+Y+QA +A KSR KET QQP +DALAA
Sbjct: 91 MVGKAKFVLREAGIGPGDKVAALSGNRVEWAVGCMASLSLGATWVPMYEQQRLTECEYILRDSGAKLLLVGSREAYDKTRHFLTR----PSRNPAFAQGDALSVINMQESKTVSSLKDIWTFDVDVPARMARVTGVMTAEADACFASAVVRPDDVAVLIYTSGTTGTPKGVELTHRNLCTNIEGMWEVVRPEDMPNALSLAFLPWAHSIGMNCELFNMMSRGARVALAQDMTTIASDIKEVRPNILFAVPTLYKKVYDRIQDKITSQGKWSRWLVDKAVAVAEKRLEILREGKRLSLGLQAQYEVLDHIVLSKLRDTLGGRVRISPVGGSKMSLPVTRFFEAALGIAILEGYGLSETSPLLSISRPDIQIRRLGSVGQAVKGAELAVVRDGLRVPEGEEGEIWASGPMVFKGYLKKKEETAAAFGEMDGKKWFRTGDLGTLEQGFLTITGRLKELYKLENGKYVCAPVVEKALLESEYIFQVVLYGADLPFNTALIVPNWEKLTAWCVSKKLPGLSASSRKTEIRTHPEVQAFMRENIVLACKDKMKKYEMPQKWLLLEEPFTVENEMLTPKMSIKRHAVIKAYGSALNAIYDQANVASYPKSRAKETPDTQQPYEDALAA 707
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00730.1 ID=NO25G00730.1|Name=NO25G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2734bp GATCCTGTTCCGTACAGTCCTGGGAGTGTCAACCCGTCCAATTCGCCTTT TTTTCCGATACCAGCCCACTGAACCACATGCAAAACACCAGGATGGTCAG CCTTTTCTTTGTGCCTCGGACAACCGACTGCAACGATCGAGCATAGGCAA AGCAGCGGCTAAGAGGACCTATACCCTTCACCTTTTGGTGTCAAGGAATG TGAGTTGCCGTTCGGTGTTCCAAAACGAAATAAGCCTTTGGGCAAAAAAA TAATGGCTTTAGCCTGGTTGAAAGGTGTCAAAATTTTATATGAGACTCAC AAGAGATCTGCCTGTCTCGATGCCGCTGCCCCCTGGTTAGCTTGTCGAAC ACGACACTGACAATCCCCTCCTCCCGTCCTTTCCCAGGCAATAAGGCAAG TGCAACAACCTTCTGTTGGTTTCGCACCCACATCCACCGCAGCATTCGAA AAGAAGGCCTCGATACCAAGCTTAAGAATAATGCATCGCTTCAAGCCACT TTCCAATCGGGTAGTTCTCGGCCACTGGATAGGCCCACAGACCTTGACAC AACCCGCCCCCTCTTCGTTTTGCGTGACACGGCTTCGATCCATAATCCGG GCGTCGTCCTCATCCTCCCAGTCTTTAACGACAACCATCGCTCCCACCTT TACCAACCTCGTCGAAATGCAGCAAAAGTATGCCCATGTCCTCCTCCCAC GTACTTCCCAGCAGCCACATACGACGCTGACTTCCCCTCACTCCCCTTCC ACAGTGTCGTTCGATCCCAGGGCCACAAGGAGTTCCTCGGTTACAAGCCC AACGCCACCAGCCCTTATCAATGGGTGACCTACAAGGAGTTTGGGGGCAT GGTGGACAAGGCCAAGTACCTATTGCAGCAGGCGGGCATTGGACCGGGGG ATAAGGTCGCCGTCATAAGCCGCAATCGGGTCGAATGGGCTGTGGGCTGC ATGGCCTCCCTCAGCCTGGGCGCGACCTGGGTGCCGATGTATGAAGAGCA ACGAATGAATGAATGCGAATATATTCTGAAGGATTCGGGTGCCAAGCTGC TATTGGTGGGGAGTGAAGAGACTTACGATAAGACCCGGCACTTTCTCGCC TCGAACAGCGCCGGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGTATTACACAGCAAGGTTTTCAAGGCCCTGTGCCGTCTTTGCAGG ACATTTGGACGTTTGATATTGATGTGCCTGCGCGCATGGCCATGGTGTCT CCTTCGATGCTTGCTTCCTCCCCCTCCTCCCCCCACATCCACGCTGACGA TGTCGCCGTGTTGATTTACACTTCAGGCACGACAGGCACGCCCAAAGGAG TGGAACTCACGCATGCAAATTTGTGCAGCAACATTCAGGGAATGTGGGAA GTGGTCAAGCCGGAAGATATGCCCGATGCCCTCTCTCTTGCCTTCCTCCC CTGGGCTCACAGCATTGGCTTGAATTGCGAATTGTTCAACATGATGAGCC GTGGTGCCCGCGTGGCCCTCGCGCAGGACATAAAGACCATTGCTAGTGAT ATCAAGGAGGTGAAGCCCAATATTTTGTTCGCTGTTCCCACGCTTTATAA GAAAGTGTATGATAAAATCCAGGATAAGATCAATTCGTCGGGGAGATGGA GTAGGTGGCTGGTCGATACAGCAGTCGCGGTAGCCGAGAAACGGTTGCAG GTCCTGAGGGAAGGAGGGGTGTTGAGCCTTGTGCTGCAATTGCAGTATAA TTTGGTGGATCGGATCGTTCTGAGCAAGTTGCGAGAGACGATGGGGGGAA ATGTAAAGCTCTCGCCGGTGGGGGGGTCGAAAATGAGTTTGCCCGTGACG AGGTTCTTTGAGGCAGCCTTGGGTATTGCGATTCTCGAGGGGTACGGCCT GTCGGAGACAAGTCCCTTGTTGAGTATAAGTCGACCAGAGGTGCAGACAC GGCGTTTGGGATCCGTTGGGCAGGCAGTAAAGGGCGCGGAGCTGGCGGTG GTGAGGGATGGGCGGCGTGTGCCGGAGGGGGAAGAAGGAGAGGTGTGGGC AGCTGGTCCGATGGTGTTTAAAGGGTACTTGAGCAAGGAGGAGGAGACGG CAGCAGCGTTTGGGGAGTTGGAAGGGAGGAAGTGGTTCAGGACAGGGGAC TTGGGCAGGCTTTCTGAGGGGTTCTTGACGATCACTGGCCGCCTCAAGGA ACTCTACAAGCTGGAGAACGGAAAATACGTTTGCGCGCCCGTCGTCGAAA AAGCCCTCCTTGAGAGCGAGTACATCTCCCAAGTCGTCTTGCACGGGGCT GACCTCCCCTTCAATGTTGCCCTGATCGTGCCCAATTGGGAAAAACTCAC TTTGTGGGCTCTGAGCAGCAAGCTAGCCGGACTATCCCCCACGCCGAGCA AGGAAGAGTTGAGTGCCCATCCGGAAGTGCAAGCTTTTATGCGTCAAACC ATCGTCCTAGCCTGTAAAGACAAGGTGAAAAAATACGAAATGCCCCAAGA ATGGCTCTTGCTCACCGAGGCCTTTACTGTCGAGAATGAGATGCTGACCC CAAAGATGAGCATCAAGCGCCATGCCGTCATCAAAGCCTATCTTCCCGCC CTCACTGCCCTGTATGAGCAAGCTGCCATTGCTCATCGTTCCAAGTCCCG GACGAAGGAGACAGTGGCGAACCAACAGCCATGTGATGATGCGCTTGCTG CTTAGGATTGAGGGAGTGGAGGAAGAGGGGGGGG back to topprotein sequence of NO25G00730.1 >NO25G00730.1-protein ID=NO25G00730.1-protein|Name=NO25G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp MVDKAKYLLQQAGIGPGDKVAVISRNRVEWAVGCMASLSLGATWVPMYEE QRMNECEYILKDSGAKLLLVGSEETYDKTRHFLASNSAGSSRSSSSSSSS SSSITQQGFQGPVPSLQDIWTFDIDVPARMAMVSPSMLASSPSSPHIHAD DVAVLIYTSGTTGTPKGVELTHANLCSNIQGMWEVVKPEDMPDALSLAFL PWAHSIGLNCELFNMMSRGARVALAQDIKTIASDIKEVKPNILFAVPTLY KKVYDKIQDKINSSGRWSRWLVDTAVAVAEKRLQVLREGGVLSLVLQLQY NLVDRIVLSKLRETMGGNVKLSPVGGSKMSLPVTRFFEAALGIAILEGYG LSETSPLLSISRPEVQTRRLGSVGQAVKGAELAVVRDGRRVPEGEEGEVW AAGPMVFKGYLSKEEETAAAFGELEGRKWFRTGDLGRLSEGFLTITGRLK ELYKLENGKYVCAPVVEKALLESEYISQVVLHGADLPFNVALIVPNWEKL TLWALSSKLAGLSPTPSKEELSAHPEVQAFMRQTIVLACKDKVKKYEMPQ EWLLLTEAFTVENEMLTPKMSIKRHAVIKAYLPALTALYEQAAIAHRSKS RTKETVANQQPCDDALAA* back to topmRNA from alignment at chr25:201712..204734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00730.1 ID=NO25G00730.1|Name=NO25G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=3023bp|location=Sequence derived from alignment at chr25:201712..204734- (Nannochloropsis oceanica) GATCCTGTTCCGTACAGTCCTGGGAGTGTCAACCCGTCCAATTCGCCTTT
TTTTCCGATACCAGCCCACTGAACCACATGCAAAACACCAGGATGGTCAG
CCTTTTCTTTGTGCCTCGGACAACCGACTGCAACGATCGAGCATAGGCAA
AGCAGCGGCTAAGAGGACCTATACCCTTCACCTTTTGGTGTCAAGGAATG
TGAGTTGCCGTTCGGTGTTCCAAAACGAAATAAGCCTTTGGGCAAAAAAA
TAATGGCTTTAGCCTGGTTGAAAGGTGTCAAAATTTTATATGAGACTCAC
AAGAGATCTGCCTGTCTCGATGCCGCTGCCCCCTGGTTAGCTTGTCGAAC
ACGACACTGACAATCCCCTCCTCCCGTCCTTTCCCAGGCAATAAGGCAAG
TGCAACAACCTTCTGTTGGTTTCGCACCCACATCCACCGCAGCATTCGAA
AAGAAGGCCTCGATACCAAGCTTAAGAATAATGCATCGCTTCAAGCCACT
TTCCAATCGGGTAGTTCTCGGCCACTGGATAGGCCCACAGACCTTGACAC
AACCCGCCCCCTCTTCGTTTTGCGTGACACGGCTTCGATCCATAATCCGG
GCGTCGTCCTCATCCTCCCAGTCTTTAACGACAACCATCGCTCCCACCTT
TACCAACCTCGTCGAAATGCAGCAAAAGTATGCCCATGTCCTCCTCCCAC
GTACTTCCCAGCAGCCACATACGACGCTGACTTCCCCTCACTCCCCTTCC
ACAGTGTCGTTCGATCCCAGGGCCACAAGGAGTTCCTCGGTTACAAGCCC
AACGCCACCAGCCCTTATCAATGGGTGACCTACAAGGAGTTTGGGGGCAT
GGTGGACAAGGCCAAGTACCTATTGCAGCAGGCGGGCATTGGACCGGGGG
ATAAGGTAAGGGCGGGTAGGTGGAGGTCCGCAGCGAGGTCGCATGTGCAA
GACTGGTACCCTCGGAAAATTCTGTCCAGCACTTATGCATGTTTAGACAA
TGGATAATCAGGCGTTTCGCTTTCTTTCCCTTCTATTCCGCTCTCATCCT
TTCAGGTCGCCGTCATAAGCCGCAATCGGGTCGAATGGGCTGTGGGCTGC
ATGGCCTCCCTCAGCCTGGGCGCGACCTGGGTGCCGATGTATGAAGAGCA
ACGAATGAATGAATGCGAATATATTCTGAAGGATTCGGGTGCCAAGCTGC
TATTGGTGGGGAGTGAAGAGACTTACGATAAGACCCGGCACTTTCTCGCC
TCGAACAGCGCCGGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTATTACACAGCAAGGTTTTCAAGGCCCTGTGCCGTCTTTGCAGG
ACATTTGGACGTTTGATATTGATGTGCCTGCGCGCATGGCCATGGTGTCT
CCTTCGATGCTTGCTTCCTCCCCCTCCTCCCCCCACATCCACGCTGACGA
TGTCGCCGTGTTGATTTACACTTCAGGCACGACAGGCACGCCCAAAGGAG
TGGAACTCACGCATGCAAATTTGTGCAGCAACATTCAGGGAATGTGGGAA
GTGGTCAAGCCGGAAGATATGCCCGATGCCCTCTCTCTTGCCTTCCTCCC
CTGGGCTCACAGCATTGGCTTGAATTGCGAATTGTTCAACATGATGAGCC
GTGGTGCCCGCGTGGCCCTCGCGCAGGACATAAAGACCATTGCTAGTGAT
ATCAAGGAGGTGAAGCCCAATATTTTGTTCGCTGTTCCCACGCTTTATAA
GAAAGTGTATGATAAAATCCAGGATAAGATCAATTCGTCGGGGAGATGGA
GTAGGTGGCTGGTCGATACAGCAGTCGCGGTAGCCGAGAAACGGTTGCAG
GTCCTGAGGGAAGGAGGGGTGTTGAGCCTTGTGCTGCAATTGCAGTATAA
TTTGGTGGATCGGATCGTTCTGAGCAAGTTGCGAGAGACGATGGGGGGAA
ATGTAAAGCTCTCGCCGGTGGGGGGGTCGAAAATGAGTTTGCCCGTGACG
AGGTTCTTTGAGGCAGCCTTGGGTATTGCGATTCTCGAGGGGTACGGCCT
GTCGGAGACAAGTCCCTTGTTGAGTATAAGTCGACCAGAGGTGCAGACAC
GGCGTTTGGGATCCGTTGGGCAGGCAGTAAAGGGCGCGGAGCTGGCGGTG
GTGAGGGATGGGCGGCGTGTGCCGGAGGGGGAAGAAGGAGAGGTGTGGGC
AGCTGGTCCGATGGTGTTTAAAGGGTACTTGAGCAAGGAGGAGGAGACGG
CAGCAGCGTTTGGGGAGTTGGAAGGGAGGAAGTGGTTCAGGACAGGGGAC
TTGGGCAGGCTTTCTGAGGGGTTCTTGACGGTACGTGCGAGGGGGGTCAG
AAAATAGAAAAATAAGGAAGAGGAAGAGAGGAAGGACACACGTGCATTGT
CTCCTGAGATGAGAAAAAGGGATGTTGCTCAGTGTTTTTAATTGTCTGCT
TGTCTGCACTTCATCACAGATCACTGGCCGCCTCAAGGAACTCTACAAGC
TGGAGAACGGAAAATACGTTTGCGCGCCCGTCGTCGAAAAAGCCCTCCTT
GAGAGCGAGTACATCTCCCAAGTCGTCTTGCACGGGGCTGACCTCCCCTT
CAATGTTGCCCTGATCGTGCCCAATTGGGAAAAACTCACTTTGTGGGCTC
TGAGCAGCAAGCTAGCCGGACTATCCCCCACGCCGAGCAAGGAAGAGTTG
AGTGCCCATCCGGAAGTGCAAGCTTTTATGCGTCAAACCATCGTCCTAGC
CTGTAAAGACAAGGTGAAAAAATACGAAATGCCCCAAGAATGGCTCTTGC
TCACCGAGGCCTTTACTGTCGAGAATGAGATGCTGACCCCAAAGATGAGC
ATCAAGCGCCATGCCGTCATCAAAGCCTATCTTCCCGCCCTCACTGCCCT
GTATGAGCAAGCTGCCATTGCTCATCGTTCCAAGTCCCGGACGAAGGAGA
CAGTGGCGAACCAACAGCCATGTGATGATGCGCTTGCTGCTTAGGATTGA
GGGAGTGGAGGAAGAGGGGGGGG back to topCoding sequence (CDS) from alignment at chr25:201712..204734- >NO25G00730.1 ID=NO25G00730.1|Name=NO25G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr25:201712..204734- (Nannochloropsis oceanica) ATGGTGGACAAGGCCAAGTACCTATTGCAGCAGGCGGGCATTGGACCGGG GGATAAGGTCGCCGTCATAAGCCGCAATCGGGTCGAATGGGCTGTGGGCT GCATGGCCTCCCTCAGCCTGGGCGCGACCTGGGTGCCGATGTATGAAGAG CAACGAATGAATGAATGCGAATATATTCTGAAGGATTCGGGTGCCAAGCT GCTATTGGTGGGGAGTGAAGAGACTTACGATAAGACCCGGCACTTTCTCG CCTCGAACAGCGCCGGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGTATTACACAGCAAGGTTTTCAAGGCCCTGTGCCGTCTTTGCA GGACATTTGGACGTTTGATATTGATGTGCCTGCGCGCATGGCCATGGTGT CTCCTTCGATGCTTGCTTCCTCCCCCTCCTCCCCCCACATCCACGCTGAC GATGTCGCCGTGTTGATTTACACTTCAGGCACGACAGGCACGCCCAAAGG AGTGGAACTCACGCATGCAAATTTGTGCAGCAACATTCAGGGAATGTGGG AAGTGGTCAAGCCGGAAGATATGCCCGATGCCCTCTCTCTTGCCTTCCTC CCCTGGGCTCACAGCATTGGCTTGAATTGCGAATTGTTCAACATGATGAG CCGTGGTGCCCGCGTGGCCCTCGCGCAGGACATAAAGACCATTGCTAGTG ATATCAAGGAGGTGAAGCCCAATATTTTGTTCGCTGTTCCCACGCTTTAT AAGAAAGTGTATGATAAAATCCAGGATAAGATCAATTCGTCGGGGAGATG GAGTAGGTGGCTGGTCGATACAGCAGTCGCGGTAGCCGAGAAACGGTTGC AGGTCCTGAGGGAAGGAGGGGTGTTGAGCCTTGTGCTGCAATTGCAGTAT AATTTGGTGGATCGGATCGTTCTGAGCAAGTTGCGAGAGACGATGGGGGG AAATGTAAAGCTCTCGCCGGTGGGGGGGTCGAAAATGAGTTTGCCCGTGA CGAGGTTCTTTGAGGCAGCCTTGGGTATTGCGATTCTCGAGGGGTACGGC CTGTCGGAGACAAGTCCCTTGTTGAGTATAAGTCGACCAGAGGTGCAGAC ACGGCGTTTGGGATCCGTTGGGCAGGCAGTAAAGGGCGCGGAGCTGGCGG TGGTGAGGGATGGGCGGCGTGTGCCGGAGGGGGAAGAAGGAGAGGTGTGG GCAGCTGGTCCGATGGTGTTTAAAGGGTACTTGAGCAAGGAGGAGGAGAC GGCAGCAGCGTTTGGGGAGTTGGAAGGGAGGAAGTGGTTCAGGACAGGGG ACTTGGGCAGGCTTTCTGAGGGGTTCTTGACGATCACTGGCCGCCTCAAG GAACTCTACAAGCTGGAGAACGGAAAATACGTTTGCGCGCCCGTCGTCGA AAAAGCCCTCCTTGAGAGCGAGTACATCTCCCAAGTCGTCTTGCACGGGG CTGACCTCCCCTTCAATGTTGCCCTGATCGTGCCCAATTGGGAAAAACTC ACTTTGTGGGCTCTGAGCAGCAAGCTAGCCGGACTATCCCCCACGCCGAG CAAGGAAGAGTTGAGTGCCCATCCGGAAGTGCAAGCTTTTATGCGTCAAA CCATCGTCCTAGCCTGTAAAGACAAGGTGAAAAAATACGAAATGCCCCAA GAATGGCTCTTGCTCACCGAGGCCTTTACTGTCGAGAATGAGATGCTGAC CCCAAAGATGAGCATCAAGCGCCATGCCGTCATCAAAGCCTATCTTCCCG CCCTCACTGCCCTGTATGAGCAAGCTGCCATTGCTCATCGTTCCAAGTCC CGGACGAAGGAGACAGTGGCGAACCAACAGCCATGTGATGATGCGCTTGC TGCTTAG back to top
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