NO25G00690.1, NO25G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00690.1
Unique NameNO25G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr25:188447..190721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:188447..190721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00690.1 vs.
Match: EWM21573.1 (checkpoint protein hus1 [Nannochloropsis gaditana])

HSP 1 Score: 283.1 bits (723), Expect = 9.400e-73
Identity = 139/163 (85.28%), Postives = 152/163 (93.25%), Query Frame = 0 
Query:    1 MKFRAGLVAKDLSLLNGVAQCFEKIGPSCLIYLSERSIKFASPKLGSDDVRVFSEIEQEKIFRDYRIESLANNSILFEIGLSNLIKSFTSAKTAQFVKLKLAKRGGQPCICLEARALDIELLHEIPIRVMRAADIQYYAPPDVPVPRVQLELPYNRSMRTVLE 164
            MKFRAGL AKDL  LNGVAQCFE+ GPSCLIYLSERSI+FASPKLGSD+VR FSEI+QEK+F +YRI SLANNSILFEIGLSNLIK+F+SAKTA FV++KLAKR GQPCICLEARALD+ELLHE+PIRVMRAADIQYY PPDV +PRVQLELPYNRSMRTVLE
Sbjct:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
The following BLAST results are available for this feature:
BLAST of NO25G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21573.19.400e-7385.28checkpoint protein hus1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00690NO25G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00690.1NO25G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00690.1.cds1NO25G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00690.1.cds2NO25G00690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00690.1.cds3NO25G00690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00690.1.cds4NO25G00690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00690.1.cds5NO25G00690.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00690.1.cds6NO25G00690.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00690.1 ID=NO25G00690.1|Name=NO25G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
CCTGCTTGTGCCAATATTTTGTCTTTGTGTAGAGGATGTGCAGTGGAGGT
GATTTAGTCGACATGAGTTGTGTGAGTTGTTGCAATCGCTGAGACTGCCT
CCCCGCACCTCTGCGGCATCCCCGCGGTAGCAGAGGAGTCGTTCTTCGTT
TTTCGTTACTACCTTCTTAATCCCCATCCAACCTCCCTTCTTACCTCGCG
CTTGAGCACAGTCACAGCAATACCTGCGCCAGTGTACCATCGGCAAGTCA
TGAAGTTCCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGC
GTGGCACAATGCTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGTC
AGAGCGCTCGATCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTCC
GGGTCTTCAGTGAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCATC
GAGAGCCTGGCTAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACCT
TATCAAGTCCTTCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAGC
TGGCAAAAAGGGGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCTG
GACATTGAGCTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGGA
CATCCAGTACTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGG
AGTTGCCCTACAACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAGC
ATGGACCGCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCT
GCATGTGCAGAATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTGA
TACCGCGCTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGAT
GGAGGGACAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGCT
GCTGGCGGCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTCT
GCTGTCTGATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGA
CATGCGGGCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAGGAGTA
GGAGGCGGAGGTGGAAGAGGAAGAGGAGGAGGGGGAGAAGAAGACAAAAA
AGGAGGAGAAGGAGGAGATGGATGGTGACTTGTGTCAGTTAGAGTGTTTG
TACATAACATAGAAAAACATATAATATGGAAAAGGAATTGCGTACTTCTT
TTCTGTCGTAGGTATCCTACAATCCTAG
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protein sequence of NO25G00690.1

>NO25G00690.1-protein ID=NO25G00690.1-protein|Name=NO25G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MKFRAGLVAKDLSLLNGVAQCFEKIGPSCLIYLSERSIKFASPKLGSDDV
RVFSEIEQEKIFRDYRIESLANNSILFEIGLSNLIKSFTSAKTAQFVKLK
LAKRGGQPCICLEARALDIELLHEIPIRVMRAADIQYYAPPDVPVPRVQL
ELPYNRSMRTVLERFKSMDRFCFVDGDMGGSLRLHVQNDRCHVQTFYGNL
IPRYSEGMAEDEEGREDGGTGFPSCSIKLDTRRLLAALYFLGGIKYETAL
CCLIEASCLVLHVALGGHAGSLTYYLPIYLV*
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mRNA from alignment at chr25:188447..190721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00690.1 ID=NO25G00690.1|Name=NO25G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at chr25:188447..190721+ (Nannochloropsis oceanica)
CCTGCTTGTGCCAATATTTTGTCTTTGTGTAGAGGATGTGCAGTGGAGGT
GATTTAGTCGACATGAGTTGTGTGAGTTGTTGCAATCGCTGAGACTGCCT
CCCCGCACCTCTGCGGCATCCCCGCGGTAGCAGAGGAGTCGTTCTTCGTT
TTTCGTTACTACCTTCTTAATCCCCATCCAACCTCCCTTCTTACCTCGCG
CTTGAGCACAGTCACAGCAATACCTGCGCCAGTGTACCATCGGCAAGTCA
TGAAGTTCCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGT
AATTCTTCCTCCCTTCCTGCCTCCATCCCTCACTCCCTTCCTCACTCTCC
CTCCCCTTTCCCCCACAACACGACACAAGGCGTGGCACAATGCTTCGAAA
AAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGCTCGATCAAGTTC
GCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTTCAGTGAGATTGA
GCAGGTGAGGCGAGGCGGGGGGGTAAGAGAGGGAAGGGTGTGAATGATGA
GGGGAGTTGTGATGGGAAGAGAAGCAAGAGTGGCGTACAAAAAGAGTAAG
CTGCAACGCTATTGCATTGGTCTCGGTGCTATGTGCATGTACGTAGCATC
AAATGTGCCTATTTGCCCTCCCTCCCCCTCCCCCTCCCCTCCCTTCCTTT
GTCACTTCCCCCCTCCCTCCCTCCCTCCGTTTCAAACAGGAGAAAATCTT
CAGGGACTACCGCATCGAGAGCCTGGCTAACAACTCCATCCTCTTCGAGA
TCGGCCTGTCCAACCTTATCAAGTCCTTCACCTCTGCCAAAACCGCGCAG
TTTGTGAAGCTGAAGCTGGCAAAAAGGGGCGGACAGCCGTGCATATGCCT
AGAAGCCAGGGTAGGTTGGTCTGATTTCTCCCTGCCTGCCTCCCTCCCTC
TTCCCGTTCCTCCCAGTATCCTTTGCTCCTATGAAACGCGCTAACGGCCA
AGACCAAAGCCGACGAGGAAGTGATTGAACGCCAGCCCCTGACTCACCTC
GCATCTGCCTGGAATCACGAGTCTGATTGAGGGAGGGGGAGGGCAGAAAA
GCTGCTTTCGATGCGATTTTTTTTTCACAACCTTCTTCCCTCCCTCCCCC
CCTCCCTCTCTCCTCCCCCCCTCCAGGCGCTGGACATTGAGCTCCTCCAC
GAAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAGTACTACGCGCC
TCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCCCTACAACCGCT
CCATGCGCACAGTGCTCGAGGTGAGGGAATGAAGGAGGCTAGGGGGGAGG
AAGGGAGGGGGGAAGGGGGTAAGGAAAGTGTGGGAAGGCAACGAAGGACG
GGCACCCACTTATTCGCCTCCCCTCCCCCTTCCTCTCTCTCTCACTCTTT
CTCTCCATCCCTTCCCCCTTCACGTCAGCGGTTCAAGAGCATGGACCGCT
TTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTGCATGTGCAG
AATGACAGGTGTCATGTGCAGACGTTTTATGGGTAACAAAGGCAACGCCC
GCCCGCCCCACTCCCTCGCTCCCTCCATCTCTTTTCCTTTTCGTTTGCAA
ATGTTACGCCAATAATCATAAAACGGGGAGGAATGGAGGGAGAAGGGAAG
AAGGGAGGGAGGAAGGGAGCGAAGGAAGAGTGCTCCGGTTGCGGGTGTAG
AAAGATGTTATCGGAGGTGGAGGGTATAGTGGTTTCCTTACTCACCTTCT
CTACCTCCCCACCTCCCCCCTCCTTCTGTTCCTCACCAGCAACTTGATAC
CGCGCTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGATGGA
GGGACAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGCTGCT
GGCGGCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTCTGCT
GTCTGATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGACAT
GCGGGCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAGGAGTAGGA
GGCGGAGGTGGAAGAGGAAGAGGAGGAGGGGGAGAAGAAGACAAAAAAGG
AGGAGAAGGAGGAGATGGATGGTGACTTGTGTCAGTTAGAGTGTTTGTAC
ATAACATAGAAAAACATATAATATGGAAAAGGAATTGCGTACTTCTTTTC
TGTCGTAGGTATCCTACAATCCTAG
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Coding sequence (CDS) from alignment at chr25:188447..190721+

>NO25G00690.1 ID=NO25G00690.1|Name=NO25G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr25:188447..190721+ (Nannochloropsis oceanica)
ATGAAGTTCCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGG
CGTGGCACAATGCTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGT
CAGAGCGCTCGATCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTC
CGGGTCTTCAGTGAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCAT
CGAGAGCCTGGCTAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACC
TTATCAAGTCCTTCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAG
CTGGCAAAAAGGGGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCT
GGACATTGAGCTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGG
ACATCCAGTACTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTG
GAGTTGCCCTACAACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAG
CATGGACCGCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGC
TGCATGTGCAGAATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTG
ATACCGCGCTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGA
TGGAGGGACAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGC
TGCTGGCGGCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTC
TGCTGTCTGATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGG
ACATGCGGGCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAG
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Synonyms
Publications