NO25G00500.1, NO25G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00500.1
Unique NameNO25G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr25:140104..141068 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:140104..141068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00500.1 vs.
Match: EWM21610.1 (copper homeostasis protein cutc [Nannochloropsis gaditana])

HSP 1 Score: 258.8 bits (660), Expect = 2.000e-65
Identity = 155/280 (55.36%), Postives = 191/280 (68.21%), Query Frame = 0 
Query:   14 RPRVLLEVCVDSLQGVATALRHGADRIELCSALEVGGLTPSLGLMETAASLVASQHLERGPPEVVAMIRPRSGDFSYSAMDLAVMKRDIECARRVGLAGVVFGSTTASDTDLDLTAIRSLVAVAQTPHLSHSTPFSITLHRAIDLSPDPVASLRSMLKELPPGSIDRVLTSGGARSAWDGRDTIARMVKAAVGSGVVVMAGAGVSVANVSELVKATGVTDVHASCSSIVDSISSMEEREGATNEVVGKMVAFGFIGRE--GVKDTDGAKIENLAKIVHAL 292
            R   +LEVCVDS +G++ AL   ADRIELCS L+ GGLTPS GLME A +L A +H    PP V+AMIRPR+GDFSYSA++L  M RDI+ ARR+GLAGVVFG T A   DL + A+  L   A+      +   S+TLHRAIDL+PDP A L ++++ LPP S+DRVLTSGGA SAW+GR  IARMV+A  G+ V +MAGAGV ++NVS+LV  TGV +VHASC S+ D       R      V  K+ AFGF G +  GV  TD AKIE LA +VH L
Sbjct:    7 RHHKILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMAL-AKRH--ESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDI------RGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276
The following BLAST results are available for this feature:
BLAST of NO25G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21610.12.000e-6555.36copper homeostasis protein cutc [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00500NO25G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00500.1NO25G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00500.1.cds1NO25G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00500.1.cds2NO25G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00500.1 ID=NO25G00500.1|Name=NO25G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATGCGGACCATGTCAGCAGCCACCGAAGTGGCGGAAAAGAGACCGCGGGT
TCTGCTCGAGGTGTGCGTTGACAGTCTTCAAGGCGTGGCCACCGCGCTAA
GGCACGGGGCGGACCGCATCGAACTGTGCAGTGCATTGGAAGTGGGTGGC
CTAACGCCATCGCTGGGCCTGATGGAAACGGCGGCCTCCTTGGTTGCTTC
GCAACATCTCGAGAGAGGGCCTCCCGAAGTAGTAGCCATGATACGGCCTC
GCTCTGGAGACTTTTCTTATTCAGCCATGGACTTGGCAGTAATGAAGCGC
GACATTGAGTGTGCTCGTCGCGTTGGCCTCGCGGGTGTCGTATTTGGGTC
CACCACTGCGTCAGACACGGACTTGGACCTGACCGCCATCCGGTCGCTTG
TTGCGGTCGCCCAGACACCCCACTTATCCCATTCCACCCCCTTTAGCATC
ACCCTCCACCGCGCCATTGACCTATCGCCAGACCCAGTAGCCAGCTTGCG
CTCCATGTTGAAAGAGCTACCTCCGGGATCCATAGACAGAGTCCTCACTT
CGGGCGGTGCTCGGTCTGCCTGGGACGGACGAGACACCATCGCCCGCATG
GTCAAGGCAGCCGTGGGAAGCGGCGTCGTGGTCATGGCGGGTGCCGGGGT
GAGCGTGGCCAATGTATCCGAGCTGGTTAAGGCCACTGGGGTGACGGATG
TGCATGCGTCGTGCAGCAGCATTGTTGACAGCATCAGTAGTATGGAAGAA
CGAGAAGGAGCGACGAATGAAGTGGTGGGAAAGATGGTGGCATTCGGCTT
CATCGGAAGAGAGGGGGTCAAAGATACAGACGGAGCCAAGATCGAGAATC
TGGCCAAAATTGTACATGCCTTGTAG
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protein sequence of NO25G00500.1

>NO25G00500.1-protein ID=NO25G00500.1-protein|Name=NO25G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MRTMSAATEVAEKRPRVLLEVCVDSLQGVATALRHGADRIELCSALEVGG
LTPSLGLMETAASLVASQHLERGPPEVVAMIRPRSGDFSYSAMDLAVMKR
DIECARRVGLAGVVFGSTTASDTDLDLTAIRSLVAVAQTPHLSHSTPFSI
TLHRAIDLSPDPVASLRSMLKELPPGSIDRVLTSGGARSAWDGRDTIARM
VKAAVGSGVVVMAGAGVSVANVSELVKATGVTDVHASCSSIVDSISSMEE
REGATNEVVGKMVAFGFIGREGVKDTDGAKIENLAKIVHAL*
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mRNA from alignment at chr25:140104..141068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00500.1 ID=NO25G00500.1|Name=NO25G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=965bp|location=Sequence derived from alignment at chr25:140104..141068- (Nannochloropsis oceanica)
ATGCGGACCATGTCAGCAGCCACCGAAGTGGCGGAAAAGAGACCGCGGGT
TCTGCTCGAGGTACGCACGTACAGGCATTCCCCACCTCTCCAAAGCCAAG
CAAGCAAGAGCAAGTACTCACCGTCGTGCTCGTCGCCCCGCATGCACAGG
TGTGCGTTGACAGTCTTCAAGGCGTGGCCACCGCGCTAAGGCACGGGGCG
GACCGCATCGAACTGTGCAGTGCATTGGAAGTGGGTGGCCTAACGCCATC
GCTGGGCCTGATGGAAACGGCGGCCTCCTTGGTTGCTTCGCAACATCTCG
AGAGAGGGCCTCCCGAAGTAGTAGCCATGATACGGCCTCGCTCTGGAGAC
TTTTCTTATTCAGCCATGGACTTGGCAGTAATGAAGCGCGACATTGAGTG
TGCTCGTCGCGTTGGCCTCGCGGGTGTCGTATTTGGGTCCACCACTGCGT
CAGACACGGACTTGGACCTGACCGCCATCCGGTCGCTTGTTGCGGTCGCC
CAGACACCCCACTTATCCCATTCCACCCCCTTTAGCATCACCCTCCACCG
CGCCATTGACCTATCGCCAGACCCAGTAGCCAGCTTGCGCTCCATGTTGA
AAGAGCTACCTCCGGGATCCATAGACAGAGTCCTCACTTCGGGCGGTGCT
CGGTCTGCCTGGGACGGACGAGACACCATCGCCCGCATGGTCAAGGCAGC
CGTGGGAAGCGGCGTCGTGGTCATGGCGGGTGCCGGGGTGAGCGTGGCCA
ATGTATCCGAGCTGGTTAAGGCCACTGGGGTGACGGATGTGCATGCGTCG
TGCAGCAGCATTGTTGACAGCATCAGTAGTATGGAAGAACGAGAAGGAGC
GACGAATGAAGTGGTGGGAAAGATGGTGGCATTCGGCTTCATCGGAAGAG
AGGGGGTCAAAGATACAGACGGAGCCAAGATCGAGAATCTGGCCAAAATT
GTACATGCCTTGTAG
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Coding sequence (CDS) from alignment at chr25:140104..141068-

>NO25G00500.1 ID=NO25G00500.1|Name=NO25G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr25:140104..141068- (Nannochloropsis oceanica)
ATGCGGACCATGTCAGCAGCCACCGAAGTGGCGGAAAAGAGACCGCGGGT
TCTGCTCGAGGTGTGCGTTGACAGTCTTCAAGGCGTGGCCACCGCGCTAA
GGCACGGGGCGGACCGCATCGAACTGTGCAGTGCATTGGAAGTGGGTGGC
CTAACGCCATCGCTGGGCCTGATGGAAACGGCGGCCTCCTTGGTTGCTTC
GCAACATCTCGAGAGAGGGCCTCCCGAAGTAGTAGCCATGATACGGCCTC
GCTCTGGAGACTTTTCTTATTCAGCCATGGACTTGGCAGTAATGAAGCGC
GACATTGAGTGTGCTCGTCGCGTTGGCCTCGCGGGTGTCGTATTTGGGTC
CACCACTGCGTCAGACACGGACTTGGACCTGACCGCCATCCGGTCGCTTG
TTGCGGTCGCCCAGACACCCCACTTATCCCATTCCACCCCCTTTAGCATC
ACCCTCCACCGCGCCATTGACCTATCGCCAGACCCAGTAGCCAGCTTGCG
CTCCATGTTGAAAGAGCTACCTCCGGGATCCATAGACAGAGTCCTCACTT
CGGGCGGTGCTCGGTCTGCCTGGGACGGACGAGACACCATCGCCCGCATG
GTCAAGGCAGCCGTGGGAAGCGGCGTCGTGGTCATGGCGGGTGCCGGGGT
GAGCGTGGCCAATGTATCCGAGCTGGTTAAGGCCACTGGGGTGACGGATG
TGCATGCGTCGTGCAGCAGCATTGTTGACAGCATCAGTAGTATGGAAGAA
CGAGAAGGAGCGACGAATGAAGTGGTGGGAAAGATGGTGGCATTCGGCTT
CATCGGAAGAGAGGGGGTCAAAGATACAGACGGAGCCAAGATCGAGAATC
TGGCCAAAATTGTACATGCCTTGTAG
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Synonyms
Publications