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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:100224..104200 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00340.1 vs.
Match: EWM21547.1 (hypothetical protein Naga_100684g1 [Nannochloropsis gaditana]) HSP 1 Score: 228.8 bits (582), Expect = 5.700e-56 Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MILQTLKRALALVAGPPTGPRARPKAAVWLQLALVCALTACPTSHTDAQEDFISLVREGAEIEHQGRLYWVQDPRDELCVGDVGLMMPCGDANLWGVRAEASKKKEEEANKRYTLELMSGRQLGATWASEEAGKNAECLARRNSFRKTSEV 152
MI+QTL++ALA +AGPPTGPRARPKAAVWLQLALVCALT CPTSHTDAQEDFISLVR+G E+EH GRLYW+QDPRDELCVGD G+MMPCGDANLWGVR E ++ ++ Y+LELMSG+QLG+ WA G++A+CL RR ++SEV
Sbjct: 66 MIVQTLQQALAFIAGPPTGPRARPKAAVWLQLALVCALTTCPTSHTDAQEDFISLVRQGVEMEHNGRLYWIQDPRDELCVGDAGVMMPCGDANLWGVRKETRRRGKKGTG--YSLELMSGKQLGSAWAKGGVGEDADCLVRRQGGWQSSEV 214
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00340.1 ID=NO25G00340.1|Name=NO25G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp ACAGAGCGATACAAGAGACGGAAAGAGGAGAAAGGGTCTAGCTGGCCACT CACAAGCCGGCGCGCATCAACTCCCTAACACGTCCGCCTCGACACGCCTG CGATAAGGGGACTGCCTTCATTCCTCGGCAGCATCCGCAGTAGAGTAGAC AAGAGAACGATTTGGATAGAATGATACTACAAACATTGAAGCGCGCCCTA GCCCTGGTGGCAGGCCCGCCGACAGGTCCTCGTGCCCGGCCCAAGGCGGC GGTGTGGCTGCAACTGGCCTTGGTGTGTGCCTTGACAGCCTGCCCCACGA GCCACACGGATGCCCAGGAGGACTTTATCTCCTTGGTTCGCGAGGGCGCG GAGATCGAGCATCAGGGTCGATTATACTGGGTGCAGGACCCGCGGGACGA GCTGTGCGTGGGGGATGTGGGCCTGATGATGCCTTGCGGCGACGCCAACC TGTGGGGCGTGCGGGCAGAAGCCAGCAAGAAGAAGGAGGAGGAGGCGAAC AAGAGGTACACTCTCGAGCTCATGTCGGGGCGGCAGCTAGGGGCCACATG GGCCAGCGAGGAGGCAGGCAAAAATGCAGAGTGCTTGGCACGGAGAAACA GTTTCAGGAAAACGTCGGAGGTATGGGTATCCAAGTGTACTTCCCGCGGG GCCAAGGGCTGGGATTTGGAGCCCTCGGGCCGCATCTCCCAGGATCACGG CCGCATCTGCCTAATCCGTGATGGGGGCCGTGTGAGGACGGAGAGCTGCG GCCATCCTGCCGCCGCCAACGCCTCCCGCGCCTTCCGCCTGATCGAGTAC CGGCCCTTCTTCGATGCCGAGGCGGCGGTCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAAGAGCAGAGGTAGCCAAGGCCTGGCAGTCGCAGGAGGAA GAGGAGGAGGACCGAGAGGGGCCGGGGACAAAAGGAGCGTTGTGCACGCT ACGGATGGCAGCCACACGGTCCTGGACGTGGCCTCAGGCCTGAGGTTCCC GGCCGATATGGGCCTCTTCCTTGCCGACAGCCACCAGGATGCACACCAGC AGGTGTTCATGGGCGGGGGCGCCTTCCGCTTCTTTGGTCTCAACATTTAT CAGGTGGCCCTCTACATCGACACGCACCGTGCCGCCGCGTCCCCCGTCCT CCGCCCCTTCCACGGCCAGGACGTGGCCAGCCTGCAGCAGAACGAGACCT TTTTCCAGGCCATGATGAGCGGACAGGACCCGGTGAAGTACTCGCGGTCG CTATACATCAAGCTCCTGATCCCCCTCAAGGCCTCCACGATGAAGGGCGC CCTCGAGGACGGCTGGAACATGGAGCCCGAAGCCAAGGCGCTCTTCTTGG AGGCCTCGTTCAAGCACGCCCTGGCCACCCGGTGCTGCTCCAAGGGGACC GAGCTTTTGTTTACCTGGAGCGCCGAGGACGTGCTCGAGGTCCGGCTTAA CGGCAGGCTGGTGGAGGCTTTCAGCAACCACGCGCTGGCCCAGGAGCTGT TCGCCAACTACGTGAACGACGACCCGATCTCACCGCAGGCCAAGAAGGGC TTTGTCACGCAGTACCCCGCTTTCCTGGCCCACGCCGCCGCCTCGGTCTC CGCCTCCCCCATCCCCCGCAAGCGCGACCGCCTGGCCGCTTACTGCCACC ACCCCAGCACCCTCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC TTCCCCCGTTTCCCATCCCTCCCCCGCCCACCACGCACCCCCTCACCTCC CCAGCCATATTCGGCCTGCGGGCGTGTCGTCTTTTCCCCATCCCCCAGCC GCCAAGGACAGCAGTAGCCCCGGGCTGCAAGGCTTGGAGCAAGTCTATCT CAGGGGGGCAGATGAGGACGAGGACGAGAAGAAGGAGCAAGAACAGGAGC AGAAAGAGGAGCAGGAGGCACCAAGACACGGCAACCACAACAAACAGGCA GATCTGGACGCAGCCGCGGGTGCTGCCGTCGCCGCCGAGGCCCTGACGAC CGCCAGTAGTACCACCAGCAGCTGGCGTGCCGTCCTCTCATCCCCCTCCA CACTCATCCTCCAGCCCCTCCGCCGCCTCTCTGCCGCTGCCCGCAAGCAC CGTGAAGGACCGTCTGGCAAAAAAGAGGAGGAGGAAGAGGGGGAGGAAGA GCAGTACTACATTCCGCGGGAGGAGCCCAAGGACGTGGTCGCCCACAAAG CTTCGAGGAGGTGGTGCGTCGTCCTCCTCCTCGCCTACGGCCTGCTCATG CTCATGTCCCTGCCCGGCAGCCGGCGCCGATTCCAGGAAAGGCTGCGTCG TGGGGGAGGGTCGATGCGGCACTTGGCGCTTGAGAGGAGCAAGCACGAAT GGGACGCTTACCTGAGGCGCACCATGGCCACCACAGCGCACCGATAG back to topprotein sequence of NO25G00340.1 >NO25G00340.1-protein ID=NO25G00340.1-protein|Name=NO25G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=759bp MILQTLKRALALVAGPPTGPRARPKAAVWLQLALVCALTACPTSHTDAQE DFISLVREGAEIEHQGRLYWVQDPRDELCVGDVGLMMPCGDANLWGVRAE ASKKKEEEANKRYTLELMSGRQLGATWASEEAGKNAECLARRNSFRKTSE VWVSKCTSRGAKGWDLEPSGRISQDHGRICLIRDGGRVRTESCGHPAAAN ASRAFRLIEYRPFFDAEAAVSSSSSSSSSSKSRGSQGLAVAGGRGGGPRG AGDKRSVVHATDGSHTVLDVASGLRFPADMGLFLADSHQDAHQQVFMGGG AFRFFGLNIYQVALYIDTHRAAASPVLRPFHGQDVASLQQNETFFQAMMS GQDPVKYSRSLYIKLLIPLKASTMKGALEDGWNMEPEAKALFLEASFKHA LATRCCSKGTELLFTWSAEDVLEVRLNGRLVEAFSNHALAQELFANYVND DPISPQAKKGFVTQYPAFLAHAAASVSASPIPRKRDRLAAYCHHPSTLFS SSSSSSSSSSSSSSSSSSSSSSSSSSSSPVSHPSPAHHAPPHLPSHIRPA GVSSFPHPPAAKDSSSPGLQGLEQVYLRGADEDEDEKKEQEQEQKEEQEA PRHGNHNKQADLDAAAGAAVAAEALTTASSTTSSWRAVLSSPSTLILQPL RRLSAAARKHREGPSGKKEEEEEGEEEQYYIPREEPKDVVAHKASRRWCV VLLLAYGLLMLMSLPGSRRRFQERLRRGGGSMRHLALERSKHEWDAYLRR TMATTAHR* back to topmRNA from alignment at chr25:100224..104200+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00340.1 ID=NO25G00340.1|Name=NO25G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3977bp|location=Sequence derived from alignment at chr25:100224..104200+ (Nannochloropsis oceanica) ACAGAGCGATACAAGAGACGGAAAGAGGAGAAAGGGTCTAGCTGGCCACT
CACAAGCCGGCGCGCATCAACTCCCTAACACGTCCGCCTCGACACGCCTG
CGATAAGGGGACTGCCTTCATTCCTCGGCAGCATCCGCAGTAGAGTAGAC
AAGAGAACGATTTGGATAGAATGATACTACAAACATTGAAGCGCGCCCTA
GCCCTGGTGGCAGGCCCGCCGACAGGTCCTCGTGCCCGGCCCAAGGCGGC
GGTGTGGCTGCAACTGGCCTTGGTGTGTGCCTTGACAGCCTGCCCCACGA
GCCACACGGATGCCCAGGAGGACTTTATCTCCTTGGTTCGCGAGGTATGC
ATATAAAGGGGAGCAATGGGTTTGGAAGAGTGATGGGATGGGTAGGGAAG
TAAGTAAGGGTCAAAGGAAGGGAGAAAAAAGGGAAGAATATGACATGAAA
GTCGGAGTGCAGTTTCCTAACCCTCCTGCCTTCTTTTCCTTTCCCCTCTC
CCTCATGATCGACATGACTAGGGCGCGGAGATCGAGCATCAGGGTCGATT
ATACTGGGTGCAGGACCCGCGGGACGAGCTGTGCGTGGGGGATGTGGGCC
TGATGATGCCTTGCGGCGACGCCAACCTGTGGGGCGTGCGGGCAGAAGCC
AGCAAGAAGAAGGAGGAGGAGGCGAACAAGAGGTGGGACCAGAGGAGGGA
AAGGAGGGACCAAGGGTTAAATGTATGGCTCTTAGTAGCTGCCTTGCGTG
GGGCCGAGAAGACTCACTTGCCTCATCCCTCATTCCCTCCCTCCCCTCCC
CCCTTGTTGAGTGCAGGTACACTCTCGAGCTCATGTCGGGGCGGCAGCTA
GGGGCCACATGGGCCAGCGAGGAGGCAGGCAAAAATGCAGAGTGCTTGGC
ACGGAGAAACAGTTTCAGGAAAACGTCGGAGGTGAGAGAGGGAGGGAGGG
AGGGGCGGAAGGGTGGAGAGTGGGGGTATGGATAAAATGAAAATGCATGC
AGGCGTCAATCCCATCTATCTGTCCCTCCCTCTTTCCTCCTCACCCTGTT
CTTCTCTCCTTGCCTTCTACCCCTCTGTCCCTTTATCTAGGTATGGGTAT
CCAAGTGTACTTCCCGCGGGGCCAAGGGCTGGGATTTGGAGCCCTCGGGC
CGCATCTCCCAGGATCACGGCCGGTACGTTTTGGTGGCGTGAAAGAGGGA
GGGAGGGAGAGAGAGAGGGAAAGAGTGAGGGGTAAAAGCAGCGACAATTT
TTTCGCTGTGATTTTTGCGGAGACTTGTACAATATCTGTATATGCCGTGC
TTATTGCCTGGGCGTCCCTCTTTATTGCCTCATCCCCCTCTTATCTCATC
TCATCATGTCCGTCGTCCTTCCCCTCTTTATCTCACTCCCCCCTGGCCTC
TTCTCCCCCCTTCCTCTTTTCCCTTGTATCTTATCCCTCCATCCCCAGCA
TCTGCCTAATCCGTGATGGGGGCCGTGTGAGGACGGAGAGCTGCGGCCAT
CCTGCCGCCGCCAACGCCTCCCGCGCCTTCCGCCTGATCGAGTACCGGCC
CTTCTTCGATGCCGAGGCGGCGGTCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAAGAGCAGAGGTAGCCAAGGCCTGGCAGTCGCAGGAGGAAGAGGA
GGAGGACCGAGAGGGGCCGGGGACAAAAGGAGCGTGTGAGTGCTGGGGGG
GGAAGCTAGTGCAGAGGGTTCCTTACCAGGGGACTTGCTGTAGCTGGACC
TCATGTGTGTTTAGAGCCCGCCGGCGTCCGTCTCACTCAAATCCACCCCT
CTCTCCCTCCCTTCCCCCCTCCCTCCCCTCGGACAGTGTGCACGCTACGG
ATGGCAGCCACACGGTCCTGGACGTGGCCTCAGGCCTGAGGTTCCCGGCC
GATATGGGCCTCTTCCTTGCCGACAGCCACCAGGATGCACACCAGCAGGT
AAGCACCCCCTCCCTCCCTCCCTCCTCCCCCCTCTTTTGGTTCTCCAACC
CTCCACCTCTTATCCCCCATTCCTCTTTTCCTCCCACCCCCCTCCTTTCC
CCCCTTCATCCAGGTGTTCATGGGCGGGGGCGCCTTCCGCTTCTTTGGTC
TCAACATTTATCAGGTGGCCCTCTACATCGACACGCACCGTGCCGCCGCG
TCCCCCGTCCTCCGCCCCTTCCACGGCCAGGACGTGGCCAGCCTGCAGCA
GAACGAGACCTTTTTCCAGGCCATGATGAGCGGACAGGTGCGTGCGCGTG
TGCAGGCGTGTGATAACTGAAGGAGGGAGGGAGAACCAGACGAGGGCTGA
GGCAAGAAACCAAACCCCTAATACCAGATGCTTACCTTTTCTGTCCTCCC
TTCTTTCCTCCCTTCCAATCTATTTGGTCCAGGACCCGGTGAAGTACTCG
CGGTCGCTATACATCAAGCTCCTGATCCCCCTCAAGGCCTCCACGATGAA
GGGCGCCCTCGAGGTAATGACACGGGGGCAAGAAGAAGGAGAACAAGAGC
ACGAAGGATGAAAGGGAATTGAGAGGGAGCGAAGCAATTGGGCCAGGGAG
GAAAGAAGGGAAACGTAGCACACCTTTTCTCTTTCACTCACCAGCTACCC
TCTCACATTCCTTCCCTCCCTCTTCCCTCCCTTCCTACACCACAGGACGG
CTGGAACATGGAGCCCGAAGCCAAGGCGCTCTTCTTGGAGGCCTCGTTCA
AGCACGCCCTGGCCACCCGGTGCTGCTCCAAGGGGACCGAGCTTTTGTTT
ACCTGGAGCGCCGAGGACGTGCTCGAGGTCCGGCTTAACGGCAGGCTGGT
GGAGGCTTTCAGCAACCACGCGCTGGCCCAGGAGCTGTTCGCCAACTACG
TGAACGACGACCCGATCTCACCGCAGGTAAGTGGACTTGTTGGTGCCAGC
CAAGGAAAGAAGGAGGAATGGGAATGAAAGGGGTCATCGTTGTGGCTGTC
TGTCACTGGTGCGCTCTTGTTTGCCCTCGTTTTCAACTCACGTCCTCCCA
CTCCTCCTCTCTCCCCCTCCTCTTCCCTCCCCCCTTCCCTTTCCTCCCCC
TGCCCGACCCACCTCCAGGCCAAGAAGGGCTTTGTCACGCAGTACCCCGC
TTTCCTGGCCCACGCCGCCGCCTCGGTCTCCGCCTCCCCCATCCCCCGCA
AGCGCGACCGCCTGGCCGCTTACTGCCACCACCCCAGCACCCTCTTTTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCCCGTTTCCCATCCCT
CCCCCGCCCACCACGCACCCCCTCACCTCCCCAGCCATATTCGGCCTGCG
GGCGTGTCGTCTTTTCCCCATCCCCCAGCCGCCAAGGACAGCAGTAGCCC
CGGGCTGCAAGGCTTGGAGCAAGTCTATCTCAGGGGGGCAGATGAGGACG
AGGACGAGAAGAAGGAGCAAGAACAGGAGCAGAAAGAGGAGCAGGAGGCA
CCAAGACACGGCAACCACAACAAACAGGCAGATCTGGACGCAGCCGCGGG
TGCTGCCGTCGCCGCCGAGGCCCTGACGACCGCCAGTAGTACCACCAGCA
GCTGGCGTGCCGTCCTCTCATCCCCCTCCACACTCATCCTCCAGCCCCTC
CGCCGCCTCTCTGCCGCTGCCCGCAAGCACCGTGAAGGACCGTCTGGCAA
AAAAGAGGAGGAGGAAGAGGGGGAGGAAGAGCAGTACTACATTCCGCGGG
AGGAGCCCAAGGACGTGGTCGCCCACAAAGCTTCGAGGAGGTGGTGCGTC
GTCCTCCTCCTCGCCTACGGCCTGCTCATGCTCATGTCCCTGCCCGGCAG
CCGGCGCCGATTCCAGGAAAGGCTGCGTCGTGGGGGAGGGTCGATGCGGC
ACTTGGCGCTTGAGAGGAGCAAGCACGAATGGGACGCTTACCTGAGGCGC
ACCATGGCCACCACAGCGCACCGATAG back to topCoding sequence (CDS) from alignment at chr25:100224..104200+ >NO25G00340.1 ID=NO25G00340.1|Name=NO25G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at chr25:100224..104200+ (Nannochloropsis oceanica) ATGATACTACAAACATTGAAGCGCGCCCTAGCCCTGGTGGCAGGCCCGCC GACAGGTCCTCGTGCCCGGCCCAAGGCGGCGGTGTGGCTGCAACTGGCCT TGGTGTGTGCCTTGACAGCCTGCCCCACGAGCCACACGGATGCCCAGGAG GACTTTATCTCCTTGGTTCGCGAGGGCGCGGAGATCGAGCATCAGGGTCG ATTATACTGGGTGCAGGACCCGCGGGACGAGCTGTGCGTGGGGGATGTGG GCCTGATGATGCCTTGCGGCGACGCCAACCTGTGGGGCGTGCGGGCAGAA GCCAGCAAGAAGAAGGAGGAGGAGGCGAACAAGAGGTACACTCTCGAGCT CATGTCGGGGCGGCAGCTAGGGGCCACATGGGCCAGCGAGGAGGCAGGCA AAAATGCAGAGTGCTTGGCACGGAGAAACAGTTTCAGGAAAACGTCGGAG GTATGGGTATCCAAGTGTACTTCCCGCGGGGCCAAGGGCTGGGATTTGGA GCCCTCGGGCCGCATCTCCCAGGATCACGGCCGCATCTGCCTAATCCGTG ATGGGGGCCGTGTGAGGACGGAGAGCTGCGGCCATCCTGCCGCCGCCAAC GCCTCCCGCGCCTTCCGCCTGATCGAGTACCGGCCCTTCTTCGATGCCGA GGCGGCGGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGAG GTAGCCAAGGCCTGGCAGTCGCAGGAGGAAGAGGAGGAGGACCGAGAGGG GCCGGGGACAAAAGGAGCGTTGTGCACGCTACGGATGGCAGCCACACGGT CCTGGACGTGGCCTCAGGCCTGAGGTTCCCGGCCGATATGGGCCTCTTCC TTGCCGACAGCCACCAGGATGCACACCAGCAGGTGTTCATGGGCGGGGGC GCCTTCCGCTTCTTTGGTCTCAACATTTATCAGGTGGCCCTCTACATCGA CACGCACCGTGCCGCCGCGTCCCCCGTCCTCCGCCCCTTCCACGGCCAGG ACGTGGCCAGCCTGCAGCAGAACGAGACCTTTTTCCAGGCCATGATGAGC GGACAGGACCCGGTGAAGTACTCGCGGTCGCTATACATCAAGCTCCTGAT CCCCCTCAAGGCCTCCACGATGAAGGGCGCCCTCGAGGACGGCTGGAACA TGGAGCCCGAAGCCAAGGCGCTCTTCTTGGAGGCCTCGTTCAAGCACGCC CTGGCCACCCGGTGCTGCTCCAAGGGGACCGAGCTTTTGTTTACCTGGAG CGCCGAGGACGTGCTCGAGGTCCGGCTTAACGGCAGGCTGGTGGAGGCTT TCAGCAACCACGCGCTGGCCCAGGAGCTGTTCGCCAACTACGTGAACGAC GACCCGATCTCACCGCAGGCCAAGAAGGGCTTTGTCACGCAGTACCCCGC TTTCCTGGCCCACGCCGCCGCCTCGGTCTCCGCCTCCCCCATCCCCCGCA AGCGCGACCGCCTGGCCGCTTACTGCCACCACCCCAGCACCCTCTTTTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCCCGTTTCCCATCCCT CCCCCGCCCACCACGCACCCCCTCACCTCCCCAGCCATATTCGGCCTGCG GGCGTGTCGTCTTTTCCCCATCCCCCAGCCGCCAAGGACAGCAGTAGCCC CGGGCTGCAAGGCTTGGAGCAAGTCTATCTCAGGGGGGCAGATGAGGACG AGGACGAGAAGAAGGAGCAAGAACAGGAGCAGAAAGAGGAGCAGGAGGCA CCAAGACACGGCAACCACAACAAACAGGCAGATCTGGACGCAGCCGCGGG TGCTGCCGTCGCCGCCGAGGCCCTGACGACCGCCAGTAGTACCACCAGCA GCTGGCGTGCCGTCCTCTCATCCCCCTCCACACTCATCCTCCAGCCCCTC CGCCGCCTCTCTGCCGCTGCCCGCAAGCACCGTGAAGGACCGTCTGGCAA AAAAGAGGAGGAGGAAGAGGGGGAGGAAGAGCAGTACTACATTCCGCGGG AGGAGCCCAAGGACGTGGTCGCCCACAAAGCTTCGAGGAGGTGGTGCGTC GTCCTCCTCCTCGCCTACGGCCTGCTCATGCTCATGTCCCTGCCCGGCAG CCGGCGCCGATTCCAGGAAAGGCTGCGTCGTGGGGGAGGGTCGATGCGGC ACTTGGCGCTTGAGAGGAGCAAGCACGAATGGGACGCTTACCTGAGGCGC ACCATGGCCACCACAGCGCACCGATAG back to top
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