NO25G00300.1, NO25G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00300.1
Unique NameNO25G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1454
Alignment locationchr25:91812..93265 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:91812..93265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00300NO25G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00300.1NO25G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00300.1.cds1NO25G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00300.1 ID=NO25G00300.1|Name=NO25G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
ATGACATCTACCAGCACCAGCACCAGCGGCGAACAAGACACCCCTCCTGC
TTCCCAGGGCGGCCGTCAAACCCTGTCCGTCCTCAACCAAGCCCGTGTGG
CCGCCCTCCTACGAGACCAAGAACGGGACCGCCGGGTGGCCGAGCGGAAG
CGGGCACCAATCGACTTATCGCTCCTTTTTACTAAGACTGCGCAGGACGC
GCCGCGTATCGGGGAGTGGGACAGCCCCGCCTCTTCGTGCTCCTTCCCGT
CCACGCGACACGGTGGCAGCAGTGAGAGTAGCGTGGGAGAAGGAAAGGGG
GTGCTGACAACGGAGAACTGGCCGGAAATCGCAGTACTATCACGCGTTTG
TAAGAGTATGTCTTCAACAATGATGTGGGACGCGACCTCCTCCACTTCAC
CATCCTCCGCCATGAGAGGAGGAGAAGAAGAAAATAGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGAGTCCTGCATCAGGGCGGCGGGA
AACCGACAAGTCGTTTTCCTCCCTTTTGCTTTCTTCTGGAGAGAAATTGA
TGATTGAGGGGAAAGGCGGACACTTCTACCCATACAGTGGGGAGGAAGAG
GAGGAGCGGGAGGGGGAAGGAGGTGCAACGCAGCCGCAGCTTCCTCCTTA
CCCCGTGGCCCACTACACCCGCACGCCGCACACCGTCCTCATCAAGCGGA
AGGCCTCCATTTGCCCGTCCTTCACTCGCTTCCAACAGGAAGCCGATGCT
CGCCTGGCCAGGGCTAGCATGCGGGAGCATCAGCTGCTCGGGCGAGGAGG
AGGAGGAGGAGGAAGAGGAGGAGACGGAGGAGGAGAGTTAAAAGGGGGAG
TACGGTTGATGCGTCCCTTTGTGAGAGCTGAGTCTGAGGCCGAAACTGGA
GGGAAGAAAGCTGATGACGGGGGGACGAGTGCCATGGAGGAGGTGGAGGA
GAAGGGAAAGGGAGGGTGCGTGGGAATGGAGGATGACGAGGAGTAAGAAG
AACGGGGAACGGCGCCGCAAGAGGAGGAGGAGGGAGAAGGAGAGGAAGAA
GGCAGTAATCCAATGATGGAGGTAGCGGATACGGGGGAGGGGGAAGAAGA
GATGAAGGAAGGGGAGTGAAGTAGTCGAATGATGGAAGTAGCGGATACGG
GGGAGGGGGTAGAGGAGATGGAGGAAGGGGAGTGAAGTAGTCGAATGATG
GAAGTAGCGGATACGGGGGAGGGGGTAGAGGAGATGGAGGAAGGGGAGTG
AAGTAGAGGGGCCAGGTGTGGCCTGAGGTATAAGGCGCGACGACAGGCAT
GCCTCCACTGGGCCCGTGCGCAGAGTAACTCACGCAGCAATCAACCAGAG
AGAGAAGGAAACGCGATGATGGGGAGGAACAGCATGAGACGACAAGGAGC
AAAGGAGGAGGCTTCAGTAAACCTTGCCGCATCCACCCGCATGCTTGTGC
TGGC
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protein sequence of NO25G00300.1

>NO25G00300.1-protein ID=NO25G00300.1-protein|Name=NO25G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MTSTSTSTSGEQDTPPASQGGRQTLSVLNQARVAALLRDQERDRRVAERK
RAPIDLSLLFTKTAQDAPRIGEWDSPASSCSFPSTRHGGSSESSVGEGKG
VLTTENWPEIAVLSRVCKSMSSTMMWDATSSTSPSSAMRGGEEENRGGGG
GGGGGGGGGSPASGRRETDKSFSSLLLSSGEKLMIEGKGGHFYPYSGEEE
EEREGEGGATQPQLPPYPVAHYTRTPHTVLIKRKASICPSFTRFQQEADA
RLARASMREHQLLGRGGGGGGRGGDGGGELKGGVRLMRPFVRAESEAETG
GKKADDGGTSAMEEVEEKGKGGCVGMEDDEE*
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mRNA from alignment at chr25:91812..93265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00300.1 ID=NO25G00300.1|Name=NO25G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp|location=Sequence derived from alignment at chr25:91812..93265+ (Nannochloropsis oceanica)
ATGACATCTACCAGCACCAGCACCAGCGGCGAACAAGACACCCCTCCTGC
TTCCCAGGGCGGCCGTCAAACCCTGTCCGTCCTCAACCAAGCCCGTGTGG
CCGCCCTCCTACGAGACCAAGAACGGGACCGCCGGGTGGCCGAGCGGAAG
CGGGCACCAATCGACTTATCGCTCCTTTTTACTAAGACTGCGCAGGACGC
GCCGCGTATCGGGGAGTGGGACAGCCCCGCCTCTTCGTGCTCCTTCCCGT
CCACGCGACACGGTGGCAGCAGTGAGAGTAGCGTGGGAGAAGGAAAGGGG
GTGCTGACAACGGAGAACTGGCCGGAAATCGCAGTACTATCACGCGTTTG
TAAGAGTATGTCTTCAACAATGATGTGGGACGCGACCTCCTCCACTTCAC
CATCCTCCGCCATGAGAGGAGGAGAAGAAGAAAATAGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGAGTCCTGCATCAGGGCGGCGGGA
AACCGACAAGTCGTTTTCCTCCCTTTTGCTTTCTTCTGGAGAGAAATTGA
TGATTGAGGGGAAAGGCGGACACTTCTACCCATACAGTGGGGAGGAAGAG
GAGGAGCGGGAGGGGGAAGGAGGTGCAACGCAGCCGCAGCTTCCTCCTTA
CCCCGTGGCCCACTACACCCGCACGCCGCACACCGTCCTCATCAAGCGGA
AGGCCTCCATTTGCCCGTCCTTCACTCGCTTCCAACAGGAAGCCGATGCT
CGCCTGGCCAGGGCTAGCATGCGGGAGCATCAGCTGCTCGGGCGAGGAGG
AGGAGGAGGAGGAAGAGGAGGAGACGGAGGAGGAGAGTTAAAAGGGGGAG
TACGGTTGATGCGTCCCTTTGTGAGAGCTGAGTCTGAGGCCGAAACTGGA
GGGAAGAAAGCTGATGACGGGGGGACGAGTGCCATGGAGGAGGTGGAGGA
GAAGGGAAAGGGAGGGTGCGTGGGAATGGAGGATGACGAGGAGTAAGAAG
AACGGGGAACGGCGCCGCAAGAGGAGGAGGAGGGAGAAGGAGAGGAAGAA
GGCAGTAATCCAATGATGGAGGTAGCGGATACGGGGGAGGGGGAAGAAGA
GATGAAGGAAGGGGAGTGAAGTAGTCGAATGATGGAAGTAGCGGATACGG
GGGAGGGGGTAGAGGAGATGGAGGAAGGGGAGTGAAGTAGTCGAATGATG
GAAGTAGCGGATACGGGGGAGGGGGTAGAGGAGATGGAGGAAGGGGAGTG
AAGTAGAGGGGCCAGGTGTGGCCTGAGGTATAAGGCGCGACGACAGGCAT
GCCTCCACTGGGCCCGTGCGCAGAGTAACTCACGCAGCAATCAACCAGAG
AGAGAAGGAAACGCGATGATGGGGAGGAACAGCATGAGACGACAAGGAGC
AAAGGAGGAGGCTTCAGTAAACCTTGCCGCATCCACCCGCATGCTTGTGC
TGGC
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Coding sequence (CDS) from alignment at chr25:91812..93265+

>NO25G00300.1 ID=NO25G00300.1|Name=NO25G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr25:91812..93265+ (Nannochloropsis oceanica)
ATGACATCTACCAGCACCAGCACCAGCGGCGAACAAGACACCCCTCCTGC
TTCCCAGGGCGGCCGTCAAACCCTGTCCGTCCTCAACCAAGCCCGTGTGG
CCGCCCTCCTACGAGACCAAGAACGGGACCGCCGGGTGGCCGAGCGGAAG
CGGGCACCAATCGACTTATCGCTCCTTTTTACTAAGACTGCGCAGGACGC
GCCGCGTATCGGGGAGTGGGACAGCCCCGCCTCTTCGTGCTCCTTCCCGT
CCACGCGACACGGTGGCAGCAGTGAGAGTAGCGTGGGAGAAGGAAAGGGG
GTGCTGACAACGGAGAACTGGCCGGAAATCGCAGTACTATCACGCGTTTG
TAAGAGTATGTCTTCAACAATGATGTGGGACGCGACCTCCTCCACTTCAC
CATCCTCCGCCATGAGAGGAGGAGAAGAAGAAAATAGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGAGTCCTGCATCAGGGCGGCGGGA
AACCGACAAGTCGTTTTCCTCCCTTTTGCTTTCTTCTGGAGAGAAATTGA
TGATTGAGGGGAAAGGCGGACACTTCTACCCATACAGTGGGGAGGAAGAG
GAGGAGCGGGAGGGGGAAGGAGGTGCAACGCAGCCGCAGCTTCCTCCTTA
CCCCGTGGCCCACTACACCCGCACGCCGCACACCGTCCTCATCAAGCGGA
AGGCCTCCATTTGCCCGTCCTTCACTCGCTTCCAACAGGAAGCCGATGCT
CGCCTGGCCAGGGCTAGCATGCGGGAGCATCAGCTGCTCGGGCGAGGAGG
AGGAGGAGGAGGAAGAGGAGGAGACGGAGGAGGAGAGTTAAAAGGGGGAG
TACGGTTGATGCGTCCCTTTGTGAGAGCTGAGTCTGAGGCCGAAACTGGA
GGGAAGAAAGCTGATGACGGGGGGACGAGTGCCATGGAGGAGGTGGAGGA
GAAGGGAAAGGGAGGGTGCGTGGGAATGGAGGATGACGAGGAGTAA
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Synonyms
Publications